Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017440.1

Orthogroup ID

OG0016655

Physical Location & Seq

Genomic Coordinates Forward (+)

24132 .. 24896

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017440.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggctccgagatggccctccaagactacctgtccccggacccaccacaccaccaccaccaccaccaccagcaacttcccacactcaagcgtgaggaccctacccaaaacgtcgccgttccggcggcggtgctcacctccaccacgaccgtcactaccgtgacgactgctgaagactcggccaggacgactcagcagctcagccgcactcggaggtcgaccaacaccaaggaccgccacaccaaggtcaacggccgcggccgccgtgtccgaatgcccgccatgtgcgccgccagaatcttccagctgacccgcgagctcggccaccgctccgacggcgagaccatcgagtggctcctccgccacgccgagccctccatcatcgccgccaccggcaccggcacacacccggcgcagctctgcacctccacccccgccatctccgcctcaatgccctccctccactgccgccccaccatcagcaccgtcaacaccaccggcgccgccggtcagctcgtgtaccacctccagcagcaccctgtttcccagtcccaccaccaccagcagcagcagctgagctgccggcttgacttgtgccagccgctgcccggtttggactactcggcggtggccgggaacaacaacggcgggtaccagaacagccacgggtacaaccaccatggattcacggcgctgctgttgcagtctggagtgggggacgggggagacgccgcctccggagaaggctctcagggactcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048511 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

254

Amino Acids

27.41

Weight (kDa)

7.36

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37000
fragaria_vesca	FvH4_6g16170
malus_domestica	MD12G1115100.v1.1
prunus_persica	Prupe.6G234200_v2.0.a1
pyrus_communis	pycom12g11440
rosa_chinensis	RchiOBHm_Chr3g0470021
rosa_laevigata	RLG00000024303
rosa_multiflora	Rmu_sc0017440.1_g000006
rosa_roxburghii	Rroxscaffold_6G00411290
rosa_rugosa	Rorug03G0106100
rosa_samantha	Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana	Rw3G014630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	3 cut(s)	395, 500, 651
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	218
AccII	CGCG	2 cut(s)	258, 315
AccIII	TCCGGA	1 cut(s)	737
AcoI	YGGCCR	5 cut(s)	180, 253, 259, 322, 630
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	2 cut(s)	501, 729
AfaI	GTAC	3 cut(s)	521, 653, 671
AfiI	CCNNNNNNNGG	4 cut(s)	37, 244, 351, 608
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	182
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	7 cut(s)	199, 307, 319, 418, 514, 574, 579
AluI	AGCT	7 cut(s)	199, 307, 319, 418, 514, 574, 579
Alw21I	GWGCWC	2 cut(s)	135, 321
Alw26I	GTCTC	2 cut(s)	335, 720
AlwNI	CAGNNNCTG	2 cut(s)	574, 604
Aor13HI	TCCGGA	1 cut(s)	737
AoxI	GGCC	6 cut(s)	15, 180, 253, 259, 322, 630
ApeKI	GCWGC	9 cut(s)	196, 415, 532, 565, 568, 571, 579, 604, 694
Asp718I	GGTACC	1 cut(s)	651
AspLEI	GCGC	4 cut(s)	290, 415, 503, 694
AspS9I	GGNCC	4 cut(s)	16, 40, 97, 232
AsuC2I	CCSGG	4 cut(s)	38, 410, 609, 634
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	3 cut(s)	40, 97, 232
BanI	GGYRCC	3 cut(s)	395, 500, 651
BanII	GRGCYC	3 cut(s)	8, 321, 375
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	135, 321
BbvI	GCAGC	9 cut(s)	208, 427, 544, 566, 577, 580, 583, 591, 681
BccI	CCATC	5 cut(s)	7, 353, 386, 446, 485
BceAI	ACGGC	6 cut(s)	101, 249, 268, 352, 661, 705
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	4 cut(s)	38, 410, 609, 634
BcoDI	GTCTC	2 cut(s)	335, 720
BfaI	CTAG	1 cut(s)	763
BfoI	RGCGCY	2 cut(s)	504, 695
BglI	GCCNNNNNGGC	1 cut(s)	122
BlpI	GCTNAGC	2 cut(s)	200, 575
Bme1390I	CCNGG	5 cut(s)	38, 184, 410, 609, 634
Bme18I	GGWCC	3 cut(s)	40, 97, 232
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	4 cut(s)	16, 40, 97, 232
BmiI	GGNNCC	7 cut(s)	7, 42, 99, 356, 397, 502, 653
BmrFI	CCNGG	5 cut(s)	38, 184, 410, 609, 634
BmrI	ACTGGG	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	2 cut(s)	512, 729
Bpu1102I	GCTNAGC	2 cut(s)	200, 575
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	4 cut(s)	38, 410, 609, 634
BsaHI	GRCGYC	2 cut(s)	501, 729
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	6 cut(s)	36, 228, 243, 256, 664, 679
BsaWI	WCCGGW	1 cut(s)	737
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 244, 351, 608
Bse118I	RCCGGY	5 cut(s)	392, 398, 497, 506, 582
Bse1I	ACTGG	1 cut(s)	547
BseAI	TCCGGA	1 cut(s)	737
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	6 cut(s)	36, 228, 243, 256, 664, 679
BseLI	CCNNNNNNNGG	4 cut(s)	37, 244, 351, 608
BseMII	CTCAG	4 cut(s)	206, 214, 566, 764
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	2 cut(s)	253, 259
BseXI	GCAGC	9 cut(s)	208, 427, 544, 566, 577, 580, 583, 591, 681
BsgI	GTGCAG	1 cut(s)	406
Bsh1236I	CGCG	2 cut(s)	258, 315
Bsh1285I	CGRYCG	3 cut(s)	150, 256, 262
BshFI	GGCC	6 cut(s)	17, 182, 255, 261, 324, 632
BshNI	GGYRCC	3 cut(s)	395, 500, 651
BsiEI	CGRYCG	3 cut(s)	150, 256, 262
BsiHKAI	GWGCWC	2 cut(s)	135, 321
BslFI	GGGAC	3 cut(s)	19, 535, 731
BslI	CCNNNNNNNGG	4 cut(s)	37, 244, 351, 608
BsmAI	GTCTC	2 cut(s)	335, 720
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	3 cut(s)	19, 535, 731
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	6 cut(s)	17, 182, 255, 261, 324, 632
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	4 cut(s)	8, 135, 321, 375
Bsp13I	TCCGGA	1 cut(s)	737
Bsp1720I	GCTNAGC	2 cut(s)	200, 575
Bsp19I	CCATGG	1 cut(s)	679
BspANI	GGCC	6 cut(s)	17, 182, 255, 261, 324, 632
BspCNI	CTCAG	4 cut(s)	205, 213, 567, 763
BspEI	TCCGGA	1 cut(s)	737
BspFNI	CGCG	2 cut(s)	258, 315
BspLI	GGNNCC	7 cut(s)	7, 42, 99, 356, 397, 502, 653
BspT107I	GGYRCC	3 cut(s)	395, 500, 651
BspTNI	GGTCTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	330
BsrFI	RCCGGY	5 cut(s)	392, 398, 497, 506, 582
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	5 cut(s)	392, 398, 497, 506, 582
BssECI	CCNNGG	6 cut(s)	36, 228, 243, 256, 664, 679
BssNI	GRCGYC	2 cut(s)	501, 729
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	3 cut(s)	228, 243, 679
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	151, 160, 487
BstACI	GRCGYC	2 cut(s)	501, 729
BstC8I	GCNNGC	4 cut(s)	279, 317, 584, 599
BstDEI	CTNAG	4 cut(s)	192, 200, 575, 750
BstDSI	CCRYGG	3 cut(s)	256, 664, 679
BstFNI	CGCG	2 cut(s)	258, 315
BstH2I	RGCGCY	2 cut(s)	504, 695
BstHHI	GCGC	4 cut(s)	290, 415, 503, 694
BstMAI	GTCTC	2 cut(s)	335, 720
BstMCI	CGRYCG	3 cut(s)	150, 256, 262
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 261, 287, 321, 336, 443, 571, 700
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	5 cut(s)	36, 182, 408, 607, 632
BstUI	CGCG	2 cut(s)	258, 315
BstV1I	GCAGC	9 cut(s)	208, 427, 544, 566, 577, 580, 583, 591, 681
BstV2I	GAAGAC	1 cut(s)	180
BstZI	CGGCCG	2 cut(s)	253, 259
BsuRI	GGCC	6 cut(s)	17, 182, 255, 261, 324, 632
BtgI	CCRYGG	3 cut(s)	256, 664, 679
BtgZI	GCGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	4 cut(s)	279, 317, 584, 599
CaiI	CAGNNNCTG	2 cut(s)	574, 604
CciNI	GCGGCCGC	1 cut(s)	259
CfoI	GCGC	4 cut(s)	290, 415, 503, 694
Cfr10I	RCCGGY	5 cut(s)	392, 398, 497, 506, 582
Cfr13I	GGNCC	4 cut(s)	16, 40, 97, 232
Cfr42I	CCGCGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	520, 652, 670
CviAII	CATG	2 cut(s)	283, 680
CviQI	GTAC	3 cut(s)	520, 652, 670
DdeI	CTNAG	4 cut(s)	192, 200, 575, 750
DinI	GGCGCC	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	5 cut(s)	180, 253, 259, 322, 630
EagI	CGGCCG	2 cut(s)	253, 259
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EciI	GGCGGA	2 cut(s)	350, 433
Ecl136II	GAGCTC	1 cut(s)	319
EclXI	CGGCCG	2 cut(s)	253, 259
Eco130I	CCWWGG	3 cut(s)	228, 243, 679
Eco24I	GRGCYC	3 cut(s)	8, 321, 375
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	3 cut(s)	40, 97, 232
Eco52I	CGGCCG	2 cut(s)	253, 259
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	228, 243, 679
EcoT38I	GRGCYC	3 cut(s)	8, 321, 375
EgeI	GGCGCC	1 cut(s)	502
EheI	GGCGCC	1 cut(s)	502
ErhI	CCWWGG	3 cut(s)	228, 243, 679
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	2 cut(s)	286, 683
FaiI	YATR	2 cut(s)	284, 681
FaqI	GGGAC	3 cut(s)	19, 535, 731
FatI	CATG	2 cut(s)	282, 679
FauI	CCCGC	4 cut(s)	286, 320, 442, 641
FblI	GTMKAC	1 cut(s)	218
FriOI	GRGCYC	3 cut(s)	8, 321, 375
FspBI	CTAG	1 cut(s)	763
GlaI	GCGC	4 cut(s)	289, 414, 502, 693
GsuI	CTGGAG	2 cut(s)	512, 729
HaeII	RGCGCY	2 cut(s)	504, 695
HaeIII	GGCC	6 cut(s)	17, 182, 255, 261, 324, 632
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	4 cut(s)	290, 415, 503, 694
Hin1I	GRCGYC	2 cut(s)	501, 729
Hin1II	CATG	2 cut(s)	286, 683
Hin6I	GCGC	4 cut(s)	288, 413, 501, 692
HinP1I	GCGC	4 cut(s)	288, 413, 501, 692
HincII	GTYRAC	3 cut(s)	219, 250, 490
HindII	GTYRAC	3 cut(s)	219, 250, 490
HinfI	GANTC	5 cut(s)	176, 190, 297, 684, 756
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	4 cut(s)	219, 250, 490, 520
Hpy188I	TCNGA	4 cut(s)	10, 213, 272, 334
Hpy188III	TCNNGA	2 cut(s)	708, 738
Hpy8I	GTNNAC	4 cut(s)	219, 250, 490, 520
Hpy99I	CGWCG	2 cut(s)	116, 338
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	3 cut(s)	151, 160, 487
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	423, 703
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 261, 287, 321, 336, 443, 571, 700
HpyF3I	CTNAG	4 cut(s)	192, 200, 575, 750
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	2 cut(s)	501, 729
Hsp92II	CATG	2 cut(s)	286, 683
HspAI	GCGC	4 cut(s)	288, 413, 501, 692
KasI	GGCGCC	1 cut(s)	500
Kpn2I	TCCGGA	1 cut(s)	737
KpnI	GGTACC	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	582
KroNI	GCCGGC	1 cut(s)	584
KspI	CCGCGG	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	11, 335, 360
Lsp1109I	GCAGC	9 cut(s)	208, 427, 544, 566, 577, 580, 583, 591, 681
MaeI	CTAG	1 cut(s)	763
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	151, 160
MbiI	CCGCTC	1 cut(s)	330
MboII	GAAGA	2 cut(s)	185, 292
MhlI	GDGCHC	4 cut(s)	8, 135, 321, 375
Mly113I	GGCGCC	1 cut(s)	501
MlyI	GAGTC	3 cut(s)	170, 184, 750
MmeI	TCCRAC	1 cut(s)	357
MroI	TCCGGA	1 cut(s)	737
MroNI	GCCGGC	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	4 cut(s)	258, 307, 574, 604
MspR9I	CCNGG	5 cut(s)	38, 184, 410, 609, 634
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	258, 315
MwoI	GCNNNNNNNGC	8 cut(s)	122, 261, 287, 321, 336, 443, 571, 700
NaeI	GCCGGC	1 cut(s)	584
NarI	GGCGCC	1 cut(s)	501
NciI	CCSGG	4 cut(s)	38, 410, 609, 634
NcoI	CCATGG	1 cut(s)	679
NgoMIV	GCCGGC	1 cut(s)	582
NlaIII	CATG	2 cut(s)	286, 683
NlaIV	GGNNCC	7 cut(s)	7, 42, 99, 356, 397, 502, 653
NmeAIII	GCCGAG	4 cut(s)	158, 300, 394, 602
NmuCI	GTSAC	2 cut(s)	151, 160
NotI	GCGGCCGC	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	297, 684
PflMI	CCANNNNNTGG	1 cut(s)	351
PleI	GAGTC	3 cut(s)	170, 184, 750
PluTI	GGCGCC	1 cut(s)	504
PpsI	GAGTC	3 cut(s)	170, 184, 750
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	7 cut(s)	7, 42, 99, 356, 397, 502, 653
PspPI	GGNCC	4 cut(s)	16, 40, 97, 232
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	2 cut(s)	574, 604
PvuII	CAGCTG	2 cut(s)	307, 574
RsaI	GTAC	3 cut(s)	521, 653, 671
RsaNI	GTAC	3 cut(s)	520, 652, 670
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	321
SacII	CCGCGG	1 cut(s)	259
SalI	GTCGAC	1 cut(s)	217
Sau96I	GGNCC	4 cut(s)	16, 40, 97, 232
SchI	GAGTC	3 cut(s)	170, 184, 750
ScrFI	CCNGG	5 cut(s)	38, 184, 410, 609, 634
SduI	GDGCHC	4 cut(s)	8, 135, 321, 375
SfoI	GGCGCC	1 cut(s)	502
Sfr303I	CCGCGG	1 cut(s)	259
SgrAI	CRCCGGYG	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	3 cut(s)	40, 97, 232
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SspDI	GGCGCC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	763
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	5 cut(s)	36, 182, 408, 607, 632
StyI	CCWWGG	3 cut(s)	228, 243, 679
TaaI	ACNGT	3 cut(s)	151, 160, 487
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	218, 348, 759
TfiI	GAWTC	2 cut(s)	297, 684
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	2 cut(s)	151, 160
TseI	GCWGC	9 cut(s)	196, 415, 532, 565, 568, 571, 579, 604, 694
Tsp45I	GTSAC	2 cut(s)	151, 160
TspRI	CASTG	1 cut(s)	470
Van91I	CCANNNNNTGG	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	40, 97, 232
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.