AT2G37480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010400
Physical Location & Seq
Forward (+)
15737842 .. 15739848
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37480.2

Sequence Viewer

Length: 585 bp
ATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAGACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGTTTACTGGCTCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAATCTGTTTTAAGTCCTAACTCTTCTGATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCCCAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCATGGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCAAGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGACAGAAGTCTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.12

Weight (kDa)

7.72

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 2 cut(s) 6, 515
AluI AGCT 2 cut(s) 6, 515
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 4 cut(s) 406, 492, 495, 572
ApoI RAATTY 1 cut(s) 539
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 485
BbsI GAAGAC 2 cut(s) 237, 446
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 418, 504, 507
BccI CCATC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BcoDI GTCTC 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 4 cut(s) 407, 493, 496, 573
BlsI GCNGC 4 cut(s) 408, 494, 497, 574
BmsI GCATC 2 cut(s) 25, 549
BoxI GACNNNNGTC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 237, 446
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BsaAI YACGTR 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 109, 148, 448
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 4 cut(s) 134, 269, 308, 569
BseNI ACTGG 3 cut(s) 109, 148, 448
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 3 cut(s) 418, 504, 507
BseYI CCCAGC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 4 cut(s) 133, 268, 309, 568
BspHI TCATGA 1 cut(s) 581
BspPI GGATC 1 cut(s) 350
BsrI ACTGG 3 cut(s) 109, 148, 448
BssMI GATC 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 163, 385, 530
Bst6I CTCTTC 2 cut(s) 223, 481
BstBAI YACGTR 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 120, 255, 317, 555
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 3 cut(s) 418, 504, 507
BstV2I GAAGAC 2 cut(s) 237, 446
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 513
CciI TCATGA 1 cut(s) 581
CviAII CATG 2 cut(s) 336, 582
CviJI RGCY 8 cut(s) 6, 84, 108, 281, 309, 344, 374, 515
CviKI_1 RGCY 8 cut(s) 6, 84, 108, 281, 309, 344, 374, 515
DdeI CTNAG 4 cut(s) 120, 255, 317, 555
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 223, 481
EarI CTCTTC 2 cut(s) 223, 481
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 339, 585
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 48
FatI CATG 2 cut(s) 335, 581
Fnu4HI GCNGC 4 cut(s) 407, 493, 496, 573
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 407, 493, 496, 573
GluI GCNGC 4 cut(s) 407, 493, 496, 573
GsaI CCCAGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 339, 585
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 4 cut(s) 61, 116, 125, 253
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 6 cut(s) 88, 112, 130, 223, 258, 558
Hpy188III TCNNGA 5 cut(s) 122, 185, 296, 533, 582
Hpy8I GTNNAC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 163, 385, 530
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 2 cut(s) 38, 572
HpyF3I CTNAG 4 cut(s) 120, 255, 317, 555
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 2 cut(s) 339, 585
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 90, 107, 129, 170, 291, 421, 429
Lsp1109I GCAGC 3 cut(s) 418, 504, 507
LweI GCATC 2 cut(s) 25, 549
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 3 cut(s) 312, 385, 550
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 6 cut(s) 125, 210, 242, 451, 468, 570
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 264, 539
MlyI GAGTC 3 cut(s) 70, 134, 247
MnlI CCTC 7 cut(s) 106, 312, 369, 372, 376, 385, 490
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 179
MunI CAATTG 1 cut(s) 264
NdeII GATC 1 cut(s) 355
NlaIII CATG 2 cut(s) 339, 585
NmuCI GTSAC 2 cut(s) 312, 385
PagI TCATGA 1 cut(s) 581
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 4 cut(s) 408, 494, 497, 574
PleI GAGTC 3 cut(s) 69, 133, 247
PmaCI CACGTG 1 cut(s) 485
PmlI CACGTG 1 cut(s) 485
PpsI GAGTC 3 cut(s) 69, 133, 247
Ppu21I YACGTR 1 cut(s) 485
PshAI GACNNNNGTC 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 8
PspCI CACGTG 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 580
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 4 cut(s) 407, 493, 496, 573
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 3 cut(s) 70, 134, 247
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 98, 249, 487, 517
SfaNI GCATC 2 cut(s) 25, 549
SfcI CTRYAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 580
Sse9I AATT 2 cut(s) 264, 539
SsiI CCGC 1 cut(s) 177
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 3 cut(s) 163, 385, 530
TaiI ACGT 1 cut(s) 487
TaqI TCGA 5 cut(s) 59, 295, 326, 368, 532
TasI AATT 2 cut(s) 264, 539
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 2 cut(s) 312, 385
TseI GCWGC 4 cut(s) 406, 492, 495, 572
Tsp45I GTSAC 2 cut(s) 312, 385
TspDTI ATGAA 5 cut(s) 153, 186, 243, 324, 570
TspRI CASTG 1 cut(s) 321
XapI RAATTY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.