Rw3G012760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010400
Physical Location & Seq
Forward (+)
12551484 .. 12554142
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012760.1

Sequence Viewer

Length: 627 bp
ATGGAGAAGGGAAACACATGCGCGAGCCCTAAAGAACATGAGGGAAAATGCAAGCCAATGTGCTTGAACAAATGTGCAACCTTTCCTACTACTAATTTGGTGCTGCCTCCTGATGGTTCCTCAGATGCGGAAGAGGAGGAACCTGAAACAGCTTTGCGTTGGCTATTCGGGGAGGAACATTATAACCAAGGCTACTCACGCTCAGTGTCTTTGCCCTCTCCTTCGAAGCTTCTTTCTGCTATGAAAGGCAGTAGAGAGAAAGAGGGTTTATCTACTGGGAAACTGACAGTCAAATGGGCCCCTGATGTTTATCCCCCGGTTACGTTGATGTCGCACACAGTTAAAAGCAACAAACAGCAGAAGTCTAAAAACAAGAAAAATTGGAAGAGAGATGGAAAGAAGGGGCAAAGGAGCAACACTTCACGAGGAAAGGACAAGAAGCAGTATCGTAAAGGTGGGGCTTCTGAGAGGGGTCACAGATCTCTGGATCCCCGCGAAATGATATCTGACACAAACGATGAATTTGGTGATTTTGTTGGCAGCCGAGAACCACCTTCTTATTGTGGGAGTTCCTTCTTGAAAAATTCGCTCACCAACATGCATTACCCGGTTGCAGAAGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

9.27

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AccII CGCG 2 cut(s) 23, 495
AciI CCGC 2 cut(s) 128, 493
AclWI GGATC 2 cut(s) 482, 495
AcsI RAATTY 2 cut(s) 521, 583
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 67, 580
AluBI AGCT 2 cut(s) 152, 229
AluI AGCT 2 cut(s) 152, 229
AlwI GGATC 2 cut(s) 482, 495
AoxI GGCC 1 cut(s) 297
ApaI GGGCCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 103, 540
ApoI RAATTY 2 cut(s) 521, 583
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 297, 298
AsuC2I CCSGG 2 cut(s) 317, 608
AsuHPI GGTGA 2 cut(s) 539, 583
AsuII TTCGAA 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 301
BamHI GGATCC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 29, 301
BauI CACGAG 1 cut(s) 423
BbvI GCAGC 2 cut(s) 90, 552
BccI CCATC 2 cut(s) 107, 386
BcnI CCSGG 2 cut(s) 317, 608
BglII AGATCT 1 cut(s) 479
BisI GCNGC 2 cut(s) 104, 541
BlsI GCNGC 2 cut(s) 105, 542
Bme1390I CCNGG 2 cut(s) 317, 608
BmgT120I GGNCC 2 cut(s) 297, 298
BmiI GGNNCC 5 cut(s) 118, 141, 299, 300, 489
BmrFI CCNGG 2 cut(s) 317, 608
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 317, 608
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 187, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 187, 315
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 3 cut(s) 135, 216, 456
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 90, 552
Bsh1236I CGCG 2 cut(s) 23, 495
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 317, 608
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 29, 301
Bsp143I GATC 2 cut(s) 479, 487
BspACI CCGC 2 cut(s) 128, 493
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 134, 215, 457
BspFNI CGCG 2 cut(s) 23, 495
BspLI GGNNCC 5 cut(s) 118, 141, 299, 300, 489
BspPI GGATC 2 cut(s) 482, 495
BspT104I TTCGAA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 187, 315
BssMI GATC 2 cut(s) 479, 487
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 187
Bst2BI CACGAG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 289, 340
Bst6I CTCTTC 2 cut(s) 126, 380
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 25, 53
BstDEI CTNAG 3 cut(s) 121, 202, 465
BstFNI CGCG 2 cut(s) 23, 495
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 482, 490
BstMBI GATC 2 cut(s) 479, 487
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 2 cut(s) 21, 601
BstSCI CCNGG 2 cut(s) 315, 606
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 2 cut(s) 23, 495
BstV1I GCAGC 2 cut(s) 90, 552
BstX2I RGATCY 2 cut(s) 479, 487
BstYI RGATCY 2 cut(s) 479, 487
BsuRI GGCC 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 25, 53
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 297, 298
CviAII CATG 3 cut(s) 18, 38, 598
DdeI CTNAG 3 cut(s) 121, 202, 465
DpnI GATC 2 cut(s) 481, 489
DpnII GATC 2 cut(s) 479, 487
Eam1104I CTCTTC 2 cut(s) 126, 380
EarI CTCTTC 2 cut(s) 126, 380
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 29, 301
Eco32I GATATC 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 298
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 2 cut(s) 29, 301
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 21, 41, 601
FaiI YATR 5 cut(s) 19, 39, 183, 242, 599
FatI CATG 3 cut(s) 17, 37, 597
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 2 cut(s) 104, 541
FriOI GRGCYC 2 cut(s) 29, 301
Fsp4HI GCNGC 2 cut(s) 104, 541
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 104, 541
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 317, 608
HhaI GCGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 21, 41, 601
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 227
HpaII CCGG 2 cut(s) 317, 608
HphI GGTGA 2 cut(s) 539, 583
Hpy188I TCNGA 3 cut(s) 124, 466, 508
Hpy188III TCNNGA 4 cut(s) 110, 423, 485, 577
HpyAV CCTTC 4 cut(s) 231, 394, 564, 583
HpyCH4III ACNGT 2 cut(s) 289, 340
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 4 cut(s) 51, 77, 601, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 3 cut(s) 121, 202, 465
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 3 cut(s) 21, 41, 601
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 479, 487
LmnI GCTCC 1 cut(s) 411
LpnPI CCDG 7 cut(s) 123, 156, 261, 315, 330, 470, 621
Lsp1109I GCAGC 2 cut(s) 90, 552
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 319, 473
MalI GATC 2 cut(s) 481, 489
MboI GATC 2 cut(s) 479, 487
MboII GAAGA 2 cut(s) 143, 397
MflI RGATCY 2 cut(s) 479, 487
MhlI GDGCHC 2 cut(s) 29, 301
MluCI AATT 4 cut(s) 94, 379, 521, 583
Mph1103I ATGCAT 1 cut(s) 603
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 2 cut(s) 317, 608
MspR9I CCNGG 2 cut(s) 317, 608
MvnI CGCG 2 cut(s) 23, 495
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 2 cut(s) 317, 608
NdeII GATC 2 cut(s) 479, 487
NlaIII CATG 3 cut(s) 21, 41, 601
NlaIV GGNNCC 5 cut(s) 118, 141, 299, 300, 489
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 2 cut(s) 21, 601
NspV TTCGAA 1 cut(s) 224
PkrI GCNGC 2 cut(s) 105, 542
PsiI TTATAA 1 cut(s) 183
PspN4I GGNNCC 5 cut(s) 118, 141, 299, 300, 489
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 297, 298
PsuI RGATCY 2 cut(s) 479, 487
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 104, 541
Sau3AI GATC 2 cut(s) 479, 487
Sau96I GGNCC 2 cut(s) 297, 298
ScrFI CCNGG 2 cut(s) 317, 608
SduI GDGCHC 2 cut(s) 29, 301
SetI ASST 7 cut(s) 83, 145, 154, 231, 326, 457, 556
SfaNI GCATC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 596
Sse9I AATT 4 cut(s) 94, 379, 521, 583
SsiI CCGC 2 cut(s) 128, 493
StyD4I CCNGG 2 cut(s) 315, 606
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 289, 340
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 224
TasI AATT 4 cut(s) 94, 379, 521, 583
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 103, 540
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 2 cut(s) 257, 534
TspRI CASTG 1 cut(s) 210
XapI RAATTY 2 cut(s) 521, 583
XceI RCATGY 2 cut(s) 21, 601
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.