FvH4_6g14310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010400
Physical Location & Seq
Forward (+)
8769977 .. 8772700
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14310.t1

Sequence Viewer

Length: 897 bp
ATGGACATTAGCTCTCTGTGTGTTAAGTCGGTGTTGGGAAATGTAGGCTGCTCTCTAGGTTTGCAGTGCTCTGCGAACCAAACGCATCGTCCTAGCAGCTTTCTCTGCCGGGATTTGGTAACTAACCTTGAAACTGCTCTTGACGAGTCCTTGAATATCAAAGAAGTTAGAGAAGAGTCTTTGAATGGCAAAGATGTTGGAAAAGAGTCCTCCTTGGATGTTAACAATGACAGAGATGTGGGACGTGCGTCTAAAAGGGGTGACATTAGCGGCGTGGAAAAGGGAAACACATGTGCATGTTCTGAAGGACATGAGGGAAAATGCAAGCCGAAGTGCCTGAACAAGTGTGCGACCTTTCCATGTACTAATCTGGTGCTGCCACCTGATGGTTCCTCAGATACGGAAGAGGAGGAACCTGAAACAGCTCTGCGGTGGCTGTTCGGGGAGGAACATTATAACCAAGGCTATTCACGCTCGGTGTCTTTGCCTTCTCCTTTGAACCTTCTTTCTGCTATGAAAGGCAGTAGAGAGAAAGAGGGTTTATCTACTGAGAAACTCACTGTCAAATGGGCCCCTGATGTGTATGATCCTCCGGTTACGTTGATGTCGCACACAGTTAAAAGCAACAAACAGCAGAAGTCTAGAAACAAGAAAAACTGGAAGAGAGATGGAAAGAAGGGGCAAAGGAGCAACTCTTCACGTGGAAAGGACAAGAAGCAATATCGTAAAGGTGGTGCTTCTGAGAGGGGTCACAGATCTCTGGATCCCCGCGAAATGATAACAGACACTAATGATGAATTTCTTGTTGGTAGCCGAGAACCACATTCTTATTGTGGGAGTTCCTTTTTGAAAAATTCACTCACCAACATGCATTACCCAGTTGCAGAAGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.9

Weight (kDa)

8.41

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccB7I CCANNNNNTGG 1 cut(s) 386
AccII CGCG 1 cut(s) 771
AciI CCGC 3 cut(s) 270, 430, 769
AclWI GGATC 3 cut(s) 581, 758, 771
AcsI RAATTY 2 cut(s) 797, 853
AcuI CTGAAG 1 cut(s) 324
AcvI CACGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 115, 386
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 5 cut(s) 131, 154, 184, 499, 850
AjiI CACGTC 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 789, 821
AluBI AGCT 4 cut(s) 12, 99, 425, 890
AluI AGCT 4 cut(s) 12, 99, 425, 890
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 3 cut(s) 581, 758, 771
AoxI GGCC 1 cut(s) 570
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 3 cut(s) 48, 96, 376
ApoI RAATTY 2 cut(s) 797, 853
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AspS9I GGNCC 2 cut(s) 570, 571
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 272, 853
BaeGI GKGCMC 1 cut(s) 574
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 574
BbrPI CACGTG 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 35, 108, 363
BccI CCATC 2 cut(s) 380, 662
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 3 cut(s) 56, 93, 642
BglII AGATCT 1 cut(s) 755
BisI GCNGC 4 cut(s) 49, 97, 271, 377
BlsI GCNGC 4 cut(s) 50, 98, 272, 378
Bme1390I CCNGG 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 570, 571
BmiI GGNNCC 5 cut(s) 391, 414, 572, 573, 765
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 872
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 872
BoxI GACNNNNGTC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 213, 460
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 386
Bse1I ACTGG 2 cut(s) 662, 878
BseDI CCNNGG 2 cut(s) 213, 460
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 115, 386
BseMII CTCAG 3 cut(s) 408, 540, 732
BseNI ACTGG 2 cut(s) 662, 878
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 3 cut(s) 35, 108, 363
Bsh1236I CGCG 1 cut(s) 771
BshFI GGCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 109, 593
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 115, 386
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 572
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 71, 574
Bsp143I GATC 3 cut(s) 586, 755, 763
BspACI CCGC 3 cut(s) 270, 430, 769
BspANI GGCC 1 cut(s) 572
BspCNI CTCAG 3 cut(s) 407, 541, 733
BspFNI CGCG 1 cut(s) 771
BspLI GGNNCC 5 cut(s) 391, 414, 572, 573, 765
BspPI GGATC 3 cut(s) 581, 758, 771
BsrI ACTGG 2 cut(s) 662, 878
BssECI CCNNGG 2 cut(s) 213, 460
BssMI GATC 3 cut(s) 586, 755, 763
BssT1I CCWWGG 2 cut(s) 213, 460
Bst4CI ACNGT 2 cut(s) 562, 616
Bst6I CTCTTC 4 cut(s) 168, 399, 656, 700
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 394, 549, 741
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 771
BstKTI GATC 3 cut(s) 589, 758, 766
BstMBI GATC 3 cut(s) 586, 755, 763
BstMWI GCNNNNNNNGC 2 cut(s) 105, 471
BstNSI RCATGY 3 cut(s) 294, 300, 871
BstPAI GACNNNNGTC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 35, 108, 363
BstX2I RGATCY 2 cut(s) 755, 763
BstYI RGATCY 2 cut(s) 755, 763
BsuRI GGCC 1 cut(s) 572
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 558
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 570, 571
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 291, 297, 311, 360, 868
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 3 cut(s) 394, 549, 741
DpnI GATC 3 cut(s) 588, 757, 765
DpnII GATC 3 cut(s) 586, 755, 763
Eam1104I CTCTTC 4 cut(s) 168, 399, 656, 700
EarI CTCTTC 4 cut(s) 168, 399, 656, 700
Eco130I CCWWGG 2 cut(s) 213, 460
Eco24I GRGCYC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 213, 460
EcoT22I ATGCAT 1 cut(s) 873
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 213, 460
FaeI CATG 5 cut(s) 294, 300, 314, 363, 871
FaiI YATR 8 cut(s) 292, 298, 312, 361, 456, 515, 585, 869
FaqI GGGAC 1 cut(s) 255
FatI CATG 5 cut(s) 290, 296, 310, 359, 867
FauI CCCGC 1 cut(s) 776
Fnu4HI GCNGC 4 cut(s) 49, 97, 271, 377
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 4 cut(s) 49, 97, 271, 377
FspBI CTAG 3 cut(s) 56, 93, 642
GluI GCNGC 4 cut(s) 49, 97, 271, 377
HaeIII GGCC 1 cut(s) 572
HapII CCGG 2 cut(s) 109, 593
HgaI GACGC 1 cut(s) 237
Hin1II CATG 5 cut(s) 294, 300, 314, 363, 871
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 3 cut(s) 146, 176, 206
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 109, 593
HphI GGTGA 2 cut(s) 272, 853
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 304, 397, 742
Hpy188III TCNNGA 3 cut(s) 140, 642, 761
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 299, 498, 512, 670
HpyCH4III ACNGT 2 cut(s) 562, 616
HpyCH4IV ACGT 3 cut(s) 244, 599, 700
HpyCH4V TGCA 5 cut(s) 64, 296, 324, 871, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 471
HpyF3I CTNAG 3 cut(s) 394, 549, 741
HpySE526I ACGT 3 cut(s) 244, 599, 700
Hsp92II CATG 5 cut(s) 294, 300, 314, 363, 871
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 586, 755, 763
LmnI GCTCC 1 cut(s) 687
Lsp1109I GCAGC 3 cut(s) 35, 108, 363
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 56, 93, 642
MaeII ACGT 3 cut(s) 244, 599, 700
MaeIII GTNAC 4 cut(s) 118, 260, 595, 749
MalI GATC 3 cut(s) 588, 757, 765
MboI GATC 3 cut(s) 586, 755, 763
MboII GAAGA 4 cut(s) 185, 416, 673, 687
MflI RGATCY 2 cut(s) 755, 763
MhlI GDGCHC 2 cut(s) 71, 574
MluCI AATT 2 cut(s) 797, 853
MlyI GAGTC 3 cut(s) 155, 185, 215
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 9 cut(s) 220, 307, 400, 403, 403, 439, 529, 600, 738
Mph1103I ATGCAT 1 cut(s) 873
MseI TTAA 3 cut(s) 24, 222, 618
MslI CAYNNNNRTG 2 cut(s) 295, 866
MspI CCGG 2 cut(s) 109, 593
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 105, 471
NciI CCSGG 1 cut(s) 110
NdeII GATC 3 cut(s) 586, 755, 763
NlaIII CATG 5 cut(s) 294, 300, 314, 363, 871
NlaIV GGNNCC 5 cut(s) 391, 414, 572, 573, 765
NmeAIII GCCGAG 1 cut(s) 839
NmuCI GTSAC 2 cut(s) 260, 749
NsiI ATGCAT 1 cut(s) 873
NspI RCATGY 3 cut(s) 294, 300, 871
PciI ACATGT 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 4 cut(s) 50, 98, 272, 378
PleI GAGTC 3 cut(s) 154, 184, 214
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 3 cut(s) 154, 184, 214
Ppu21I YACGTR 1 cut(s) 701
PscI ACATGT 1 cut(s) 290
PshAI GACNNNNGTC 1 cut(s) 247
PsiI TTATAA 1 cut(s) 456
PspCI CACGTG 1 cut(s) 701
PspN4I GGNNCC 5 cut(s) 391, 414, 572, 573, 765
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 2 cut(s) 570, 571
PsuI RGATCY 2 cut(s) 755, 763
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 2 cut(s) 295, 866
SaqAI TTAA 3 cut(s) 24, 222, 618
SatI GCNGC 4 cut(s) 49, 97, 271, 377
Sau3AI GATC 3 cut(s) 586, 755, 763
Sau96I GGNCC 2 cut(s) 570, 571
SchI GAGTC 3 cut(s) 155, 185, 215
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 71, 574
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 295, 866
Sse9I AATT 2 cut(s) 797, 853
SsiI CCGC 3 cut(s) 270, 430, 769
SspMI CTAG 3 cut(s) 56, 93, 642
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 213, 460
TaaI ACNGT 2 cut(s) 562, 616
TaiI ACGT 3 cut(s) 247, 602, 703
TasI AATT 2 cut(s) 797, 853
TatI WGTACW 1 cut(s) 362
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 3 cut(s) 24, 222, 618
Tru9I TTAA 3 cut(s) 24, 222, 618
TscAI CASTG 2 cut(s) 71, 565
TseFI GTSAC 2 cut(s) 260, 749
TseI GCWGC 3 cut(s) 48, 96, 376
Tsp45I GTSAC 2 cut(s) 260, 749
TspDTI ATGAA 2 cut(s) 530, 810
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 71, 565
Van91I CCANNNNNTGG 1 cut(s) 386
XapI RAATTY 2 cut(s) 797, 853
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 3 cut(s) 294, 300, 871
XspI CTAG 3 cut(s) 56, 93, 642
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.