RLG00000024512

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010400
Physical Location & Seq
Reverse (-)
36587728 .. 36589803
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024512

Sequence Viewer

Length: 1167 bp
ATGCCTTCGGTGCCCGGTCAACTCCTTCTTCGACCCTCGGTCTCTTCTTTGACTTCTTTGCACGGCGGTTCATGCTCTCATCGTCTGAAACGTCTCGAAAAAGTCTCTTTTTGCGTGTTTCCTCAGTTGGATTTTGAGAAGGTTTTTGGTAGAGAAATCGTTGGAGGTTTTGGGATCGAAGAATTTCTAAAGCTCCGGAAGCTCTCTCTCTTTTCGGTTTTTAGAGTTCTTGGTCTCAAGGGTTTTGTAGCTCTAGATTTTTACGAGATGGACATTAGCTCTATTTGTGGTAAGTCGGTGTTGCAAGATGTAGGCTGCTCTCTGGGTTTGCAGTGCTCTGCGAGCCAAAAGCAACATCCTAGTAGCTCTCTCTGCCAGGATTTGGTACGGAAGCTCGAAACTGCTCTTGGCGAGTCCTTGAATATCAAAGAAGTTGGAGAAGAGTCATTGAATGGCAAAGATGTTGGGAAAGAGTCCTTTGATGTTAAAGTTGATGGAGATGTGGAACATGCTACTAATAGGGATGATATTAGCAGCATAGAGAATGGAAACACATGCGCGAGTCCTAAAGAACATGAGGGAAAATGCAAGCCAATGTGCTTGAACAAATGTGCAACCTTTCCTACTACTAATTTGGTGCTGCCTCCTGATGGTTCCTCAGATGTGGATGAGGAGGAACCTGAAACAGCTTTGCGTTGGCTATTCGGGGAGGAACATTATAACCAAGGCTACTCACGCTCAGTGTCTTTGCCCTCTCCTTCGAAGCTTCTTTCTGCTATGAAAGGCAGTAGAGAAAAAGAGGGTTTATCTACTGGGAAACTCACAGTCAAATGGGCCCCTGATGTGTATGATCCCCCGGTTACGTTGATGTCGCACACAGTTAAAAGCAACAAACAGCAGAAGTCTAAAAACAAGAAAAATTGGAAGAGAGATGGAAAGAAGGGGCAAAGGAGCAACACTTCTCGAGGAAAGGACAAGAAGCAGTATCGTAAAGGTGGGGCTTCTGAGAGGGGTCACAGATCTCTGGATCCCCGCGAAATGATATCTGACACAAACAATGAATTTGGTGATTTTGTTGGCAGCCGAGAACCACCTTCTTATTGTGGGAGTTCCTTCTTGAAAAATTCACTCTCCAACATGCATTACCCAGTTGCAGAAGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.78

Weight (kDa)

8.51

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 2 cut(s) 560, 1035
AccIII TCCGGA 1 cut(s) 195
AciI CCGC 2 cut(s) 66, 1033
AclWI GGATC 4 cut(s) 182, 845, 1022, 1035
AcsI RAATTY 3 cut(s) 182, 1061, 1123
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 382, 650
AgsI TTSAA 4 cut(s) 421, 451, 604, 1120
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 375
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 8 cut(s) 193, 202, 251, 279, 366, 394, 689, 766
AluI AGCT 8 cut(s) 193, 202, 251, 279, 366, 394, 689, 766
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 4 cut(s) 46, 98, 109, 239
AlwI GGATC 4 cut(s) 182, 845, 1022, 1035
Ama87I CYCGRG 1 cut(s) 963
Aor13HI TCCGGA 1 cut(s) 195
AoxI GGCC 1 cut(s) 834
ApaI GGGCCC 1 cut(s) 838
ApeKI GCWGC 4 cut(s) 315, 534, 640, 1080
ApoI RAATTY 3 cut(s) 182, 1061, 1123
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 834, 835
AsuC2I CCSGG 2 cut(s) 15, 857
AsuHPI GGTGA 1 cut(s) 1079
AsuII TTCGAA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 963
BaeGI GKGCMC 2 cut(s) 15, 838
BamHI GGATCC 1 cut(s) 1027
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 838
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 4 cut(s) 302, 546, 627, 1092
BccI CCATC 4 cut(s) 262, 488, 644, 926
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 377
BcnI CCSGG 2 cut(s) 15, 857
BcoDI GTCTC 4 cut(s) 46, 98, 109, 239
BfaI CTAG 2 cut(s) 254, 360
BglII AGATCT 1 cut(s) 1019
BisI GCNGC 4 cut(s) 316, 535, 641, 1081
BlsI GCNGC 4 cut(s) 317, 536, 642, 1082
Bme1390I CCNGG 3 cut(s) 15, 377, 857
BmeRI GACNNNNNGTC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 2 cut(s) 834, 835
BmiI GGNNCC 6 cut(s) 12, 655, 678, 836, 837, 1029
BmrFI CCNGG 3 cut(s) 15, 377, 857
BmrI ACTGGG 2 cut(s) 822, 1142
BmuI ACTGGG 2 cut(s) 822, 1142
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 15, 857
BsaI GGTCTC 2 cut(s) 46, 239
BsaJI CCNNGG 3 cut(s) 36, 724, 855
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 650
Bse1I ACTGG 2 cut(s) 817, 1148
BseAI TCCGGA 1 cut(s) 195
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 3 cut(s) 36, 724, 855
BseGI GGATG 3 cut(s) 355, 529, 673
BseLI CCNNNNNNNGG 2 cut(s) 382, 650
BseMII CTCAG 4 cut(s) 137, 672, 753, 996
BseNI ACTGG 2 cut(s) 817, 1148
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 2 cut(s) 15, 838
BseXI GCAGC 4 cut(s) 302, 546, 627, 1092
Bsh1236I CGCG 2 cut(s) 560, 1035
BshFI GGCC 1 cut(s) 836
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 3 cut(s) 15, 196, 857
BslI CCNNNNNNNGG 2 cut(s) 382, 650
BsmAI GTCTC 4 cut(s) 46, 98, 109, 239
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 836
Bso31I GGTCTC 2 cut(s) 46, 239
BsoBI CYCGRG 1 cut(s) 963
Bsp119I TTCGAA 1 cut(s) 761
Bsp120I GGGCCC 1 cut(s) 834
Bsp1286I GDGCHC 3 cut(s) 15, 338, 838
Bsp13I TCCGGA 1 cut(s) 195
Bsp143I GATC 4 cut(s) 174, 850, 1019, 1027
BspACI CCGC 2 cut(s) 66, 1033
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 4 cut(s) 136, 671, 752, 997
BspEI TCCGGA 1 cut(s) 195
BspFNI CGCG 2 cut(s) 560, 1035
BspLI GGNNCC 6 cut(s) 12, 655, 678, 836, 837, 1029
BspPI GGATC 4 cut(s) 182, 845, 1022, 1035
BspT104I TTCGAA 1 cut(s) 761
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 2 cut(s) 46, 239
BsrI ACTGG 2 cut(s) 817, 1148
BssECI CCNNGG 3 cut(s) 36, 724, 855
BssMI GATC 4 cut(s) 174, 850, 1019, 1027
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 826, 880
Bst6I CTCTTC 3 cut(s) 49, 435, 920
BstBI TTCGAA 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 343, 590
BstDEI CTNAG 4 cut(s) 123, 658, 739, 1005
BstF5I GGATG 3 cut(s) 355, 529, 673
BstFNI CGCG 2 cut(s) 560, 1035
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 4 cut(s) 177, 853, 1022, 1030
BstMAI GTCTC 4 cut(s) 46, 98, 109, 239
BstMBI GATC 4 cut(s) 174, 850, 1019, 1027
BstMWI GCNNNNNNNGC 6 cut(s) 10, 72, 199, 342, 372, 735
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 3 cut(s) 512, 558, 1141
BstSCI CCNGG 3 cut(s) 13, 375, 855
BstSLI GKGCMC 2 cut(s) 15, 838
BstUI CGCG 2 cut(s) 560, 1035
BstV1I GCAGC 4 cut(s) 302, 546, 627, 1092
BstX2I RGATCY 2 cut(s) 1019, 1027
BstYI RGATCY 2 cut(s) 1019, 1027
BsuRI GGCC 1 cut(s) 836
BtsCI GGATG 3 cut(s) 355, 529, 673
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 338, 747
Cac8I GCNNGC 2 cut(s) 343, 590
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 834, 835
Csp6I GTAC 1 cut(s) 386
CviAII CATG 5 cut(s) 72, 509, 555, 575, 1138
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 4 cut(s) 123, 658, 739, 1005
DpnI GATC 4 cut(s) 176, 852, 1021, 1029
DpnII GATC 4 cut(s) 174, 850, 1019, 1027
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 49, 435, 920
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 3 cut(s) 49, 435, 920
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 838
Eco31I GGTCTC 2 cut(s) 46, 239
Eco32I GATATC 1 cut(s) 1044
Eco88I CYCGRG 1 cut(s) 963
EcoO109I RGGNCCY 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 375
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 1143
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 724
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 5 cut(s) 75, 512, 558, 578, 1141
FaiI YATR 9 cut(s) 73, 510, 539, 556, 576, 720, 779, 849, 1139
FatI CATG 5 cut(s) 71, 508, 554, 574, 1137
FauI CCCGC 1 cut(s) 1040
Fnu4HI GCNGC 4 cut(s) 316, 535, 641, 1081
FokI GGATG 3 cut(s) 342, 536, 680
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 4 cut(s) 316, 535, 641, 1081
FspBI CTAG 2 cut(s) 254, 360
GlaI GCGC 1 cut(s) 559
GluI GCNGC 4 cut(s) 316, 535, 641, 1081
HaeIII GGCC 1 cut(s) 836
HapII CCGG 3 cut(s) 15, 196, 857
HhaI GCGC 1 cut(s) 560
Hin1II CATG 5 cut(s) 75, 512, 558, 578, 1141
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 20
HindII GTYRAC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 4 cut(s) 413, 443, 473, 562
HpaII CCGG 3 cut(s) 15, 196, 857
HphI GGTGA 1 cut(s) 1079
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 4 cut(s) 87, 661, 1006, 1048
Hpy188III TCNNGA 7 cut(s) 95, 196, 254, 647, 963, 1025, 1117
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 7 cut(s) 15, 35, 133, 768, 934, 1104, 1123
HpyCH4III ACNGT 2 cut(s) 826, 880
HpyCH4IV ACGT 2 cut(s) 91, 863
HpyCH4V TGCA 7 cut(s) 61, 304, 331, 588, 614, 1141, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 72, 199, 342, 372, 735
HpyF3I CTNAG 4 cut(s) 123, 658, 739, 1005
HpySE526I ACGT 2 cut(s) 91, 863
Hsp92II CATG 5 cut(s) 75, 512, 558, 578, 1141
HspAI GCGC 1 cut(s) 558
Kpn2I TCCGGA 1 cut(s) 195
Kzo9I GATC 4 cut(s) 174, 850, 1019, 1027
LmnI GCTCC 2 cut(s) 198, 951
Lsp1109I GCAGC 4 cut(s) 302, 546, 627, 1092
MaeI CTAG 2 cut(s) 254, 360
MaeII ACGT 2 cut(s) 91, 863
MaeIII GTNAC 2 cut(s) 859, 1013
MalI GATC 4 cut(s) 176, 852, 1021, 1029
MboI GATC 4 cut(s) 174, 850, 1019, 1027
MboII GAAGA 5 cut(s) 20, 36, 191, 452, 937
MflI RGATCY 2 cut(s) 1019, 1027
MhlI GDGCHC 3 cut(s) 15, 338, 838
MluCI AATT 5 cut(s) 182, 631, 919, 1061, 1123
MlyI GAGTC 4 cut(s) 422, 452, 482, 571
MmeI TCCRAC 4 cut(s) 108, 142, 415, 1158
Mph1103I ATGCAT 1 cut(s) 1143
MroI TCCGGA 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 486, 882
MspI CCGG 3 cut(s) 15, 196, 857
MspR9I CCNGG 3 cut(s) 15, 377, 857
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 2 cut(s) 560, 1035
MwoI GCNNNNNNNGC 6 cut(s) 10, 72, 199, 342, 372, 735
NciI CCSGG 2 cut(s) 15, 857
NdeII GATC 4 cut(s) 174, 850, 1019, 1027
NlaIII CATG 5 cut(s) 75, 512, 558, 578, 1141
NlaIV GGNNCC 6 cut(s) 12, 655, 678, 836, 837, 1029
NmeAIII GCCGAG 1 cut(s) 1109
NmuCI GTSAC 1 cut(s) 1013
NsiI ATGCAT 1 cut(s) 1143
NspI RCATGY 3 cut(s) 512, 558, 1141
NspV TTCGAA 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 4 cut(s) 317, 536, 642, 1082
PleI GAGTC 4 cut(s) 421, 451, 481, 570
PpsI GAGTC 4 cut(s) 421, 451, 481, 570
PsiI TTATAA 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 6 cut(s) 12, 655, 678, 836, 837, 1029
PspOMI GGGCCC 1 cut(s) 834
PspPI GGNCC 2 cut(s) 834, 835
PsuI RGATCY 2 cut(s) 1019, 1027
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 2 cut(s) 486, 882
SatI GCNGC 4 cut(s) 316, 535, 641, 1081
Sau3AI GATC 4 cut(s) 174, 850, 1019, 1027
Sau96I GGNCC 2 cut(s) 834, 835
SchI GAGTC 4 cut(s) 422, 452, 482, 571
ScrFI CCNGG 3 cut(s) 15, 377, 857
SduI GDGCHC 3 cut(s) 15, 338, 838
Sfr274I CTCGAG 1 cut(s) 963
SfuI TTCGAA 1 cut(s) 761
SlaI CTCGAG 1 cut(s) 963
SmlI CTYRAG 2 cut(s) 236, 963
SmoI CTYRAG 2 cut(s) 236, 963
Sse9I AATT 5 cut(s) 182, 631, 919, 1061, 1123
SsiI CCGC 2 cut(s) 66, 1033
SspMI CTAG 2 cut(s) 254, 360
StyD4I CCNGG 3 cut(s) 13, 375, 855
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 2 cut(s) 826, 880
TaiI ACGT 2 cut(s) 94, 866
TaqI TCGA 6 cut(s) 31, 96, 177, 396, 761, 964
TaqII GACCGA 1 cut(s) 28
TasI AATT 5 cut(s) 182, 631, 919, 1061, 1123
Tru1I TTAA 2 cut(s) 486, 882
Tru9I TTAA 2 cut(s) 486, 882
TscAI CASTG 2 cut(s) 338, 747
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 4 cut(s) 315, 534, 640, 1080
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 3 cut(s) 60, 794, 1074
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 338, 747
Van91I CCANNNNNTGG 1 cut(s) 382
XapI RAATTY 3 cut(s) 182, 1061, 1123
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 3 cut(s) 512, 558, 1141
XhoI CTCGAG 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 254, 360
Zsp2I ATGCAT 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.