Rh3BG156100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010400
Physical Location & Seq
Forward (+)
13302161 .. 13305188
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG156100.1

Sequence Viewer

Length: 900 bp
ATGGACATTAGCTCTCTTTGTGGTAAGTCGGTGTTGCAAGATGTAGGCTGCTCTCTGGGTTTGCAGTGCTCTGCGAGCCAAAAGCAACATCCTAGTAGCTCTCTCTGCCAGGATTTGGTACGGAACCTTGAAATTTCTCTCGGCGAGTCCTTGAATATCAAAGAAGCTGGAGAGGAGTCATTGAATGGCAAAGATGTTGGAAAAGAGTCCTTTGATGTTAAAATTGATGGAGATGTGGAACATGCTTCTAATAGGGATGATATTAGCGGCATGGAGAAGGGAAACACATGCGCGAGTCCTAAAGAACATGAGGGAACATGCAAGCCAATGTGCTTGAACAAATGTGCAACCTTTCCTACTACTAATTTGGTGCTGCCTCCTGATGGTTCCTCAGATGCGGAAGAGGAGGAACCTGAAACAGCTTTGCGTTGGCTATTCGGGGAGGAACATTATAACCAAGGCTACTCACGCTCAGTGTCTTTGCCCTCTCCTTTGAAGCTTCTTTCTGCTATGAAAGGCAGTAGAGAGAAAGAGGGTTTATCTACTGGGAAACTCACAGTCAAATGGGCCCCCGATGTGTATGATCCCCCGGTTACGTTGATGTCGCACACAGTTAAAAGCAACAAACAGCAGAAGTCTAAAAACAAGAAAAATTGGAAGAGAGATGGAAAGAAGGGGCAAAGGAGCAACACTTCAAGAGGAAAGGACAAGAAGCAGTATCGTAAAGGTGGGGCTTCTGAGAGGGGTCACAGATCTCTGGATCCCCGCGAAATGATATCTGACAGAAACGATGAATTTGGTGATTTTGTTGGCAGCCGAGAACCACCTTCTTATTGTGGGAGTTCCTTCTTGAAAAATTCGCTCACCAACATGCATTACCCAGTTGCAGAAGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.85

Weight (kDa)

7.03

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 115
AccII CGCG 2 cut(s) 293, 768
AciI CCGC 3 cut(s) 267, 398, 766
AclWI GGATC 3 cut(s) 578, 755, 768
AcsI RAATTY 3 cut(s) 132, 794, 856
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 115, 383
AgsI TTSAA 7 cut(s) 131, 154, 184, 337, 496, 696, 853
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 5 cut(s) 12, 99, 167, 422, 499
AluI AGCT 5 cut(s) 12, 99, 167, 422, 499
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 3 cut(s) 578, 755, 768
AoxI GGCC 1 cut(s) 567
ApaI GGGCCC 1 cut(s) 571
ApeKI GCWGC 3 cut(s) 48, 373, 813
ApoI RAATTY 3 cut(s) 132, 794, 856
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 567, 568
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 812, 856
BaeGI GKGCMC 1 cut(s) 571
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 35, 360, 825
BccI CCATC 3 cut(s) 221, 377, 659
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 1 cut(s) 590
BfaI CTAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 752
BisI GCNGC 4 cut(s) 49, 268, 374, 814
BlsI GCNGC 4 cut(s) 50, 269, 375, 815
Bme1390I CCNGG 2 cut(s) 110, 590
BmgT120I GGNCC 2 cut(s) 567, 568
BmiI GGNNCC 6 cut(s) 125, 388, 411, 569, 570, 762
BmrFI CCNGG 2 cut(s) 110, 590
BmrI ACTGGG 2 cut(s) 555, 875
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 2 cut(s) 555, 875
BpmI CTGGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 457, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 383
Bse1I ACTGG 2 cut(s) 550, 881
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 457, 588
BseGI GGATG 2 cut(s) 88, 262
BseLI CCNNNNNNNGG 2 cut(s) 115, 383
BseMII CTCAG 3 cut(s) 405, 486, 729
BseNI ACTGG 2 cut(s) 550, 881
BseRI GAGGAG 2 cut(s) 188, 419
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 3 cut(s) 35, 360, 825
Bsh1236I CGCG 2 cut(s) 293, 768
BshFI GGCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 115, 383
BsnI GGCC 1 cut(s) 569
Bsp120I GGGCCC 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 71, 571
Bsp143I GATC 3 cut(s) 583, 752, 760
BspACI CCGC 3 cut(s) 267, 398, 766
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 3 cut(s) 404, 485, 730
BspFNI CGCG 2 cut(s) 293, 768
BspLI GGNNCC 6 cut(s) 125, 388, 411, 569, 570, 762
BspPI GGATC 3 cut(s) 578, 755, 768
BsrI ACTGG 2 cut(s) 550, 881
BssECI CCNNGG 2 cut(s) 457, 588
BssMI GATC 3 cut(s) 583, 752, 760
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 559, 613
Bst6I CTCTTC 2 cut(s) 396, 653
BstC8I GCNNGC 2 cut(s) 76, 323
BstDEI CTNAG 3 cut(s) 391, 472, 738
BstF5I GGATG 2 cut(s) 88, 262
BstFNI CGCG 2 cut(s) 293, 768
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 586, 755, 763
BstMBI GATC 3 cut(s) 583, 752, 760
BstMWI GCNNNNNNNGC 3 cut(s) 75, 105, 468
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 4 cut(s) 245, 291, 321, 874
BstSCI CCNGG 2 cut(s) 108, 588
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 2 cut(s) 293, 768
BstV1I GCAGC 3 cut(s) 35, 360, 825
BstX2I RGATCY 2 cut(s) 752, 760
BstYI RGATCY 2 cut(s) 752, 760
BsuRI GGCC 1 cut(s) 569
BtsCI GGATG 2 cut(s) 88, 262
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 480
Cac8I GCNNGC 2 cut(s) 76, 323
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 567, 568
Csp6I GTAC 1 cut(s) 119
CviAII CATG 6 cut(s) 242, 271, 288, 308, 318, 871
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 3 cut(s) 391, 472, 738
DpnI GATC 3 cut(s) 585, 754, 762
DpnII GATC 3 cut(s) 583, 752, 760
Eam1104I CTCTTC 2 cut(s) 396, 653
EarI CTCTTC 2 cut(s) 396, 653
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 571
Eco32I GATATC 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 6 cut(s) 245, 274, 291, 311, 321, 874
FaiI YATR 9 cut(s) 243, 272, 289, 309, 319, 453, 512, 582, 872
FatI CATG 6 cut(s) 241, 270, 287, 307, 317, 870
FauI CCCGC 1 cut(s) 773
Fnu4HI GCNGC 4 cut(s) 49, 268, 374, 814
FokI GGATG 2 cut(s) 75, 269
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 4 cut(s) 49, 268, 374, 814
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 292
GluI GCNGC 4 cut(s) 49, 268, 374, 814
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 590
HhaI GCGC 1 cut(s) 293
Hin1II CATG 6 cut(s) 245, 274, 291, 311, 321, 874
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 4 cut(s) 146, 176, 206, 295
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 812, 856
Hpy188I TCNGA 3 cut(s) 394, 739, 781
Hpy188III TCNNGA 4 cut(s) 380, 696, 758, 850
HpyAV CCTTC 4 cut(s) 271, 667, 837, 856
HpyCH4III ACNGT 2 cut(s) 559, 613
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 6 cut(s) 37, 64, 321, 347, 874, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 105, 468
HpyF3I CTNAG 3 cut(s) 391, 472, 738
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 6 cut(s) 245, 274, 291, 311, 321, 874
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 583, 752, 760
LmnI GCTCC 1 cut(s) 684
Lsp1109I GCAGC 3 cut(s) 35, 360, 825
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 592, 746
MalI GATC 3 cut(s) 585, 754, 762
MboI GATC 3 cut(s) 583, 752, 760
MboII GAAGA 2 cut(s) 413, 670
MflI RGATCY 2 cut(s) 752, 760
MhlI GDGCHC 2 cut(s) 71, 571
MluCI AATT 6 cut(s) 132, 222, 364, 652, 794, 856
MlyI GAGTC 4 cut(s) 155, 185, 215, 304
MmeI TCCRAC 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 876
MseI TTAA 2 cut(s) 219, 615
MslI CAYNNNNRTG 1 cut(s) 869
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 110, 590
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 293, 768
MwoI GCNNNNNNNGC 3 cut(s) 75, 105, 468
NciI CCSGG 1 cut(s) 590
NdeII GATC 3 cut(s) 583, 752, 760
NlaIII CATG 6 cut(s) 245, 274, 291, 311, 321, 874
NlaIV GGNNCC 6 cut(s) 125, 388, 411, 569, 570, 762
NmeAIII GCCGAG 2 cut(s) 120, 842
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 4 cut(s) 245, 291, 321, 874
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 4 cut(s) 50, 269, 375, 815
PleI GAGTC 4 cut(s) 154, 184, 214, 303
PpsI GAGTC 4 cut(s) 154, 184, 214, 303
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 6 cut(s) 125, 388, 411, 569, 570, 762
PspOMI GGGCCC 1 cut(s) 567
PspPI GGNCC 2 cut(s) 567, 568
PsuI RGATCY 2 cut(s) 752, 760
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 2 cut(s) 219, 615
SatI GCNGC 4 cut(s) 49, 268, 374, 814
Sau3AI GATC 3 cut(s) 583, 752, 760
Sau96I GGNCC 2 cut(s) 567, 568
SchI GAGTC 4 cut(s) 155, 185, 215, 304
ScrFI CCNGG 2 cut(s) 110, 590
SduI GDGCHC 2 cut(s) 71, 571
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 869
Sse9I AATT 6 cut(s) 132, 222, 364, 652, 794, 856
SsiI CCGC 3 cut(s) 267, 398, 766
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 108, 588
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 559, 613
TaiI ACGT 1 cut(s) 599
TasI AATT 6 cut(s) 132, 222, 364, 652, 794, 856
TauI GCSGC 1 cut(s) 270
Tru1I TTAA 2 cut(s) 219, 615
Tru9I TTAA 2 cut(s) 219, 615
TscAI CASTG 2 cut(s) 71, 480
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 3 cut(s) 48, 373, 813
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 2 cut(s) 527, 807
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 71, 480
Van91I CCANNNNNTGG 1 cut(s) 115
XapI RAATTY 3 cut(s) 132, 794, 856
XceI RCATGY 4 cut(s) 245, 291, 321, 874
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.