Prupe.6G250300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010400
Physical Location & Seq
Forward (+)
24554137 .. 24556700
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G250300.1

Sequence Viewer

Length: 885 bp
ATGGACATAAGCTCTCCGTGTGGTAAGTCGGTGTTGAAAAATGTAGACAGCTTCCCAGGTTTGCAGCCCTCTGCGAACCAAGCACAAAGTCCTAATAGTTCGCTTTCAGATCGTTTGGTAAGTGACCTTGTAAATGCTGTTGACGAGTCCTTGAATATCAAAGATGTTGAAGAAGAGTCCTTGAATATCAAAGATTTTGTTGAAGAGTCGTTGAATCTCAAAGATGTTGGGAAAGAGTACGTTGGTATCAAAGATGTTGGAGAAGTGGAACATGCTTCTTCCAATGAGGAAATTATTAGCGGCGTGGAGAAAAGAAAACCATGCGACGGTCCTAAAGCACAACAGGGAAAAATCACTCAGAATTGCTTGAATAAGTGTGTAACCTTTCCTAATGCTAATGGGGTGCTGCCTCGTAATGCCTCCTCGGATATGGCAGAGGAGGAACCCGAAACAGCCATGCAGACGCCTGCTCCTTCGAAGCTACTTTCTGCAATGAAAGGCAGCCGGGAGAAAGAGGGGTTATCACCCGGGAAACTTACTGTCACTTGGGCCCCTGATGTGTATGATCCGCCTACTACATCGATGTCGCACACAGTTACAGGCAAGAAACAGCAGAAGTCAAAGAACAAGAAAAATTGGAAGAGAGATGGAAAGAAGGGGCAAAAGGGCAGCTCTTCTCGAGGAAAAGAGAAGAAGCAATATCGCAAAGGTGGGGCTTCCGAGAGGTCTCACAGATATCTGGATTCCCGTGAAACATTGGTTGGCACAAACAATGATTTTGGTGACCTTGTGGTTGGCAGCCCAGACCAACATTCTTATTGTGGGAGCTCCTTCTTGAAAAATTCGCTCACAAGCATGCATTACCCAGTAGCAGAAGCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

31.95

Weight (kDa)

7.6

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AciI CCGC 2 cut(s) 300, 569
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 1 cut(s) 841
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 8 cut(s) 37, 154, 170, 184, 203, 214, 370, 838
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AluBI AGCT 5 cut(s) 12, 51, 481, 672, 828
AluI AGCT 5 cut(s) 12, 51, 481, 672, 828
Alw21I GWGCWC 1 cut(s) 830
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 1 cut(s) 560
Ama87I CYCGRG 2 cut(s) 527, 678
AoxI GGCC 1 cut(s) 549
ApaI GGGCCC 1 cut(s) 553
ApeKI GCWGC 5 cut(s) 64, 406, 501, 669, 798
ApoI RAATTY 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 329, 549, 550
AsuC2I CCSGG 3 cut(s) 506, 528, 529
AsuHPI GGTGA 2 cut(s) 516, 794
AsuII TTCGAA 1 cut(s) 476
AvaI CYCGRG 2 cut(s) 527, 678
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BanII GRGCYC 2 cut(s) 553, 830
Bbv12I GWGCWC 1 cut(s) 830
BbvI GCAGC 5 cut(s) 76, 393, 513, 681, 810
BccI CCATC 1 cut(s) 641
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 3 cut(s) 506, 528, 529
BcoDI GTCTC 1 cut(s) 732
BisI GCNGC 6 cut(s) 65, 301, 407, 502, 670, 799
BlsI GCNGC 6 cut(s) 66, 302, 408, 503, 671, 800
Bme1390I CCNGG 4 cut(s) 57, 506, 528, 529
Bme18I GGWCC 1 cut(s) 329
BmeT110I CYCGRG 2 cut(s) 527, 678
BmgT120I GGNCC 3 cut(s) 329, 549, 550
BmiI GGNNCC 3 cut(s) 444, 551, 552
BmrFI CCNGG 4 cut(s) 57, 506, 528, 529
BmrI ACTGGG 1 cut(s) 860
BmuI ACTGGG 1 cut(s) 860
Bpu14I TTCGAA 1 cut(s) 476
BpuMI CCSGG 3 cut(s) 506, 528, 529
Bsa29I ATCGAT 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 732
BsaJI CCNNGG 3 cut(s) 55, 423, 527
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 866
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 3 cut(s) 55, 423, 527
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 866
BseRI GAGGAG 2 cut(s) 412, 452
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 5 cut(s) 76, 393, 513, 681, 810
BshFI GGCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 830
BsiHKCI CYCGRG 2 cut(s) 527, 678
BsiSI CCGG 2 cut(s) 505, 528
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 732
BsnI GGCC 1 cut(s) 551
Bso31I GGTCTC 1 cut(s) 732
BsoBI CYCGRG 2 cut(s) 527, 678
Bsp119I TTCGAA 1 cut(s) 476
Bsp120I GGGCCC 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 553, 830
Bsp143I GATC 2 cut(s) 109, 565
BspACI CCGC 2 cut(s) 300, 569
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 581
BspLI GGNNCC 3 cut(s) 444, 551, 552
BspPI GGATC 1 cut(s) 560
BspQI GCTCTTC 1 cut(s) 679
BspT104I TTCGAA 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 866
BssECI CCNNGG 3 cut(s) 55, 423, 527
BssMI GATC 2 cut(s) 109, 565
BssNI GRCGYC 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 329, 541, 595
Bst6I CTCTTC 4 cut(s) 168, 198, 635, 679
BstACI GRCGYC 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 468, 857
BstDEI CTNAG 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 782
BstKTI GATC 2 cut(s) 112, 568
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 2 cut(s) 109, 565
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 275, 859
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 4 cut(s) 55, 504, 526, 527
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 5 cut(s) 76, 393, 513, 681, 810
Bsu15I ATCGAT 1 cut(s) 581
BsuRI GGCC 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 581
Cac8I GCNNGC 2 cut(s) 468, 857
Cfr13I GGNCC 3 cut(s) 329, 549, 550
Cfr9I CCCGGG 1 cut(s) 527
ClaI ATCGAT 1 cut(s) 581
CseI GACGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 238
CviAII CATG 4 cut(s) 272, 321, 457, 856
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 357
DpnI GATC 2 cut(s) 111, 567
DpnII GATC 2 cut(s) 109, 565
Eam1104I CTCTTC 4 cut(s) 168, 198, 635, 679
EarI CTCTTC 4 cut(s) 168, 198, 635, 679
EciI GGCGGA 1 cut(s) 558
Ecl136II GAGCTC 1 cut(s) 828
Eco24I GRGCYC 2 cut(s) 553, 830
Eco31I GGTCTC 1 cut(s) 732
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 828
Eco88I CYCGRG 2 cut(s) 527, 678
Eco91I GGTNACC 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 828
EcoO109I RGGNCCY 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 737
EcoT22I ATGCAT 1 cut(s) 861
EcoT38I GRGCYC 2 cut(s) 553, 830
FaeI CATG 4 cut(s) 275, 324, 460, 859
FaiI YATR 7 cut(s) 8, 273, 322, 431, 458, 564, 857
FatI CATG 4 cut(s) 271, 320, 456, 855
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 6 cut(s) 65, 301, 407, 502, 670, 799
FriOI GRGCYC 2 cut(s) 553, 830
Fsp4HI GCNGC 6 cut(s) 65, 301, 407, 502, 670, 799
GluI GCNGC 6 cut(s) 65, 301, 407, 502, 670, 799
HaeIII GGCC 1 cut(s) 551
HapII CCGG 2 cut(s) 505, 528
HgaI GACGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 4 cut(s) 275, 324, 460, 859
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 5 cut(s) 146, 176, 206, 214, 743
HpaII CCGG 2 cut(s) 505, 528
HphI GGTGA 2 cut(s) 516, 794
Hpy166II GTNNAC 2 cut(s) 46, 142
Hpy188I TCNGA 4 cut(s) 109, 360, 427, 721
Hpy188III TCNNGA 3 cut(s) 678, 740, 835
Hpy8I GTNNAC 2 cut(s) 46, 142
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 483, 649, 841
HpyCH4III ACNGT 3 cut(s) 329, 541, 595
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 64, 460, 491, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 4 cut(s) 275, 324, 460, 859
Kzo9I GATC 2 cut(s) 109, 565
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 3 cut(s) 475, 825, 833
Lsp1109I GCAGC 5 cut(s) 76, 393, 513, 681, 810
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 5 cut(s) 122, 379, 541, 595, 782
MalI GATC 2 cut(s) 111, 567
MboI GATC 2 cut(s) 109, 565
MboII GAAGA 7 cut(s) 182, 185, 215, 270, 652, 666, 703
MhlI GDGCHC 2 cut(s) 553, 830
MluCI AATT 4 cut(s) 291, 361, 634, 841
MlyI GAGTC 3 cut(s) 155, 185, 215
MmeI TCCRAC 1 cut(s) 238
Mph1103I ATGCAT 1 cut(s) 861
MslI CAYNNNNRTG 1 cut(s) 854
MspI CCGG 2 cut(s) 505, 528
MspR9I CCNGG 4 cut(s) 57, 506, 528, 529
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 3 cut(s) 506, 528, 529
NdeII GATC 2 cut(s) 109, 565
NlaIII CATG 4 cut(s) 275, 324, 460, 859
NlaIV GGNNCC 3 cut(s) 444, 551, 552
NmuCI GTSAC 3 cut(s) 122, 541, 782
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 2 cut(s) 275, 859
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 679
PfeI GAWTC 2 cut(s) 214, 743
PkrI GCNGC 6 cut(s) 66, 302, 408, 503, 671, 800
PleI GAGTC 3 cut(s) 154, 184, 214
PpsI GAGTC 3 cut(s) 154, 184, 214
Psp124BI GAGCTC 1 cut(s) 830
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 444, 551, 552
PspOMI GGGCCC 1 cut(s) 549
PspPI GGNCC 3 cut(s) 329, 549, 550
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 854
SacI GAGCTC 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 679
SatI GCNGC 6 cut(s) 65, 301, 407, 502, 670, 799
Sau3AI GATC 2 cut(s) 109, 565
Sau96I GGNCC 3 cut(s) 329, 549, 550
SchI GAGTC 3 cut(s) 155, 185, 215
ScrFI CCNGG 4 cut(s) 57, 506, 528, 529
SduI GDGCHC 2 cut(s) 553, 830
Sfr274I CTCGAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 678
SmaI CCCGGG 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SphI GCATGC 1 cut(s) 859
Sse9I AATT 4 cut(s) 291, 361, 634, 841
SsiI CCGC 2 cut(s) 300, 569
SstI GAGCTC 1 cut(s) 830
StyD4I CCNGG 4 cut(s) 55, 504, 526, 527
TaaI ACNGT 3 cut(s) 329, 541, 595
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 476, 581, 679
TasI AATT 4 cut(s) 291, 361, 634, 841
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 214, 743
TseFI GTSAC 3 cut(s) 122, 541, 782
TseI GCWGC 5 cut(s) 64, 406, 501, 669, 798
Tsp45I GTSAC 3 cut(s) 122, 541, 782
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 6
TspMI CCCGGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 841
XceI RCATGY 2 cut(s) 275, 859
XhoI CTCGAG 1 cut(s) 678
XmaI CCCGGG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.