Rmu_sc0012351.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012351.1
OG0010400
Physical Location & Seq
Forward (+)
1 .. 1888
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012351.1_g000001.1.cds

Sequence Viewer

Length: 834 bp
tgctctgcgagccaaaagcaacatcctagtagctctctctgccaggatttggtacggaaccttgaaatttctctctgcgagtccttgaatatcaaagaagctggagaggagtcgttgaatggcaaagatgttggaaaagagttctttgatgttaaagttgatggagatgtggaacatgcttctaatagggatgatattagcggcatggagaagggaaacacatgcgctaaccctaaagaacatgagggaaaatgcaagccaatgtgcttgaacaaatgtgcaacctttcctactactaatttggtgctgcctcctgatggttcctcagatgcggaagaggaggaacctgaaacagctttgcgttggctattcggggaggaacattataaccaaggctactcacgctcagtgtctttgccctctccttcgaagcttctttctgctatgaaaggcagtagagagaaagagggtttatctactgggaaactgacagtcaaatgggcccctgatgtgtatgatcccccggttacgttgatgtcgcacacagttaaaagcaacaaacagcagaagtctaaaaacaagaaaaattggaagagagatggaaagaaggggcaaaggagcaacacttcacgaggaaaggacaagaagcagtatcgtaaaggtggggcttctgagaggggtcacagatctctggatccccgcgaaatgatatctgacacaaacgatgaatttggtgattttgttggcagccgagaaccaccttcttattgtgggagttccttcttgaaaaattcgctcaccaacatgcattacccggttgcagaagccttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.68

Weight (kDa)

7.69

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37480 AT2G37480 AT3G53670 AT3G53670
fragaria_vesca FvH4_6g14310
malus_domestica MD04G1121200.v1.1 MD12G1138400.v1.1
prunus_persica Prupe.6G250300_v2.0.a1
pyrus_communis pycom04g11040 pycom12g13240
rosa_chinensis RchiOBHm_Chr3g0467301
rosa_laevigata RLG00000024512
rosa_multiflora Rmu_sc0000962.1_g000068 Rmu_sc0012351.1_g000001
rosa_roxburghii Rroxscaffold_6G00413750
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG134800 Rh3BG156100 Rh3CG155700 Rh3DG156900
rosa_wichuraiana Rw3G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 1 cut(s) 702
AciI CCGC 3 cut(s) 201, 332, 700
AclWI GGATC 3 cut(s) 512, 689, 702
AcsI RAATTY 3 cut(s) 66, 728, 790
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 49, 317
AgsI TTSAA 5 cut(s) 65, 88, 118, 271, 787
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 33, 101, 356, 433
AluI AGCT 4 cut(s) 33, 101, 356, 433
AlwI GGATC 3 cut(s) 512, 689, 702
AoxI GGCC 1 cut(s) 501
ApaI GGGCCC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 307, 747
ApoI RAATTY 3 cut(s) 66, 728, 790
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 501, 502
AsuC2I CCSGG 2 cut(s) 524, 815
AsuHPI GGTGA 2 cut(s) 746, 790
AsuII TTCGAA 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 505
BamHI GGATCC 1 cut(s) 694
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 630
BbvI GCAGC 2 cut(s) 294, 759
BccI CCATC 3 cut(s) 155, 311, 593
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 2 cut(s) 524, 815
BfaI CTAG 1 cut(s) 27
BglII AGATCT 1 cut(s) 686
BisI GCNGC 3 cut(s) 202, 308, 748
BlsI GCNGC 3 cut(s) 203, 309, 749
Bme1390I CCNGG 3 cut(s) 44, 524, 815
BmgT120I GGNCC 2 cut(s) 501, 502
BmiI GGNNCC 6 cut(s) 59, 322, 345, 503, 504, 696
BmrFI CCNGG 3 cut(s) 44, 524, 815
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 524, 815
BsaJI CCNNGG 2 cut(s) 391, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 317
Bse1I ACTGG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 391, 522
BseGI GGATG 2 cut(s) 22, 196
BseLI CCNNNNNNNGG 2 cut(s) 49, 317
BseMII CTCAG 3 cut(s) 339, 420, 663
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 2 cut(s) 122, 353
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 294, 759
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 1 cut(s) 503
BsiSI CCGG 2 cut(s) 524, 815
BslI CCNNNNNNNGG 2 cut(s) 49, 317
BsnI GGCC 1 cut(s) 503
Bsp119I TTCGAA 1 cut(s) 428
Bsp120I GGGCCC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 517, 686, 694
BspACI CCGC 3 cut(s) 201, 332, 700
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 338, 419, 664
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 6 cut(s) 59, 322, 345, 503, 504, 696
BspPI GGATC 3 cut(s) 512, 689, 702
BspT104I TTCGAA 1 cut(s) 428
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 391, 522
BssMI GATC 3 cut(s) 517, 686, 694
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 493, 547
Bst6I CTCTTC 2 cut(s) 330, 587
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 10, 257
BstDEI CTNAG 3 cut(s) 325, 406, 672
BstF5I GGATG 2 cut(s) 22, 196
BstFNI CGCG 1 cut(s) 702
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 3 cut(s) 520, 689, 697
BstMBI GATC 3 cut(s) 517, 686, 694
BstMWI GCNNNNNNNGC 3 cut(s) 9, 39, 402
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 3 cut(s) 179, 225, 808
BstSCI CCNGG 3 cut(s) 42, 522, 813
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 294, 759
BstX2I RGATCY 2 cut(s) 686, 694
BstYI RGATCY 2 cut(s) 686, 694
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 2 cut(s) 22, 196
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 10, 257
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 501, 502
Csp6I GTAC 1 cut(s) 53
CviAII CATG 5 cut(s) 176, 205, 222, 242, 805
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 3 cut(s) 325, 406, 672
DpnI GATC 3 cut(s) 519, 688, 696
DpnII GATC 3 cut(s) 517, 686, 694
Eam1104I CTCTTC 2 cut(s) 330, 587
EarI CTCTTC 2 cut(s) 330, 587
Eco130I CCWWGG 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 505
Eco32I GATATC 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 5 cut(s) 179, 208, 225, 245, 808
FaiI YATR 8 cut(s) 177, 206, 223, 243, 387, 446, 516, 806
FatI CATG 5 cut(s) 175, 204, 221, 241, 804
FauI CCCGC 1 cut(s) 707
Fnu4HI GCNGC 3 cut(s) 202, 308, 748
FokI GGATG 2 cut(s) 9, 203
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 3 cut(s) 202, 308, 748
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 226
GluI GCNGC 3 cut(s) 202, 308, 748
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 503
HapII CCGG 2 cut(s) 524, 815
HhaI GCGC 1 cut(s) 227
Hin1II CATG 5 cut(s) 179, 208, 225, 245, 808
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 2 cut(s) 80, 110
HpaII CCGG 2 cut(s) 524, 815
HphI GGTGA 2 cut(s) 746, 790
Hpy188I TCNGA 3 cut(s) 328, 673, 715
Hpy188III TCNNGA 4 cut(s) 314, 630, 692, 784
HpyAV CCTTC 5 cut(s) 205, 435, 601, 771, 790
HpyCH4III ACNGT 2 cut(s) 493, 547
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 255, 281, 808, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 9, 39, 402
HpyF3I CTNAG 3 cut(s) 325, 406, 672
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 5 cut(s) 179, 208, 225, 245, 808
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 517, 686, 694
LmnI GCTCC 1 cut(s) 618
Lsp1109I GCAGC 2 cut(s) 294, 759
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 526, 680
MalI GATC 3 cut(s) 519, 688, 696
MboI GATC 3 cut(s) 517, 686, 694
MboII GAAGA 2 cut(s) 347, 604
MflI RGATCY 2 cut(s) 686, 694
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 5 cut(s) 66, 298, 586, 728, 790
MlyI GAGTC 2 cut(s) 89, 119
MmeI TCCRAC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 810
MseI TTAA 2 cut(s) 153, 549
MslI CAYNNNNRTG 1 cut(s) 803
MspI CCGG 2 cut(s) 524, 815
MspR9I CCNGG 3 cut(s) 44, 524, 815
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 3 cut(s) 9, 39, 402
NciI CCSGG 2 cut(s) 524, 815
NdeII GATC 3 cut(s) 517, 686, 694
NlaIII CATG 5 cut(s) 179, 208, 225, 245, 808
NlaIV GGNNCC 6 cut(s) 59, 322, 345, 503, 504, 696
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 1 cut(s) 680
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 3 cut(s) 179, 225, 808
NspV TTCGAA 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 3 cut(s) 203, 309, 749
PleI GAGTC 2 cut(s) 88, 118
PpsI GAGTC 2 cut(s) 88, 118
PsiI TTATAA 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 6 cut(s) 59, 322, 345, 503, 504, 696
PspOMI GGGCCC 1 cut(s) 501
PspPI GGNCC 2 cut(s) 501, 502
PsuI RGATCY 2 cut(s) 686, 694
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 803
SaqAI TTAA 2 cut(s) 153, 549
SatI GCNGC 3 cut(s) 202, 308, 748
Sau3AI GATC 3 cut(s) 517, 686, 694
Sau96I GGNCC 2 cut(s) 501, 502
SchI GAGTC 2 cut(s) 89, 119
ScrFI CCNGG 3 cut(s) 44, 524, 815
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 803
Sse9I AATT 5 cut(s) 66, 298, 586, 728, 790
SsiI CCGC 3 cut(s) 201, 332, 700
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 3 cut(s) 42, 522, 813
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 493, 547
TaiI ACGT 1 cut(s) 533
TaqI TCGA 1 cut(s) 428
TasI AATT 5 cut(s) 66, 298, 586, 728, 790
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 153, 549
Tru9I TTAA 2 cut(s) 153, 549
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 2 cut(s) 307, 747
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 2 cut(s) 461, 741
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 49
XapI RAATTY 3 cut(s) 66, 728, 790
XceI RCATGY 3 cut(s) 179, 225, 808
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.