Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Forward (+)

15764515 .. 15765658

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCAATAATACAACAACCTCCTTCGGCTCCGGCCCCGGCATCGTCGTCGTCCCAACTCCCGCCACAACAGTTCCCACCACCGACTTCCCCGGTACCACCATCACTTCCAACTCCACCTTCATTATCATCGGACCTCCACCACCGTTCCCAGCTCCTCCCCGGAGCATCGACCTTACTCCTCTCAAACTAATCTTCGTCGTCATCGCCTTCGTCGCCGTTCCCGCTTTAGTTTACGCTCTCTTCTTCAACGGCCCATGTTCTTCCTCCCGCCGCAACTCCTCTTCTTCCCGCACCAGCTCTTCCTCCGACGATACACCTCACGCCACCGTCGACACCCCGCCGATCACCGAGACCACCGTAACTTCGGAATCCGGAGGGAAATTCCACAAAGATACACATTCTAAAGAGATTGGAAACGAGTGCTCCGTGTGTCTCATGGTGTTCACCGACAGCGATGAACTCCGGCAACTAAGCGAGTGTAAACACGCGTTCCACGTGTTATGTATTGAGACGTGGCTTAAGGATCATCCTAATTGTCCCATTTGTCGAACTGACGTCTCCGTTAAACAACAAACCGAAGCTCCCAACGTTCCCGTTAACGTTAACGGAAACGTGAATCGCAGCGGCGGAAACCGTCGCGTTTCGGCCACTAGTAGAGATGACGATTGGCGTCAAGGTTTACCTGATGCTTCTAGTTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

25.2

Weight (kDa)

5.83

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	140 - 184	3.2e-12	Ring finger domain
zf-RING_11	PF17123	141 - 170	3.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	141 - 183	4.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	142 - 183	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	154 - 184	1e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	561
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	2 cut(s)	491, 642
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	8 cut(s)	63, 225, 271, 274, 292, 341, 627, 630
AclI	AACGTT	2 cut(s)	591, 603
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	499
AcyI	GRCGYC	2 cut(s)	558, 673
AfaI	GTAC	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	2 cut(s)	489, 498
AgsI	TTSAA	2 cut(s)	7, 250
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	516
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	155, 300, 584
AluI	AGCT	3 cut(s)	155, 300, 584
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	4 cut(s)	347, 440, 506, 565
AlwI	GGATC	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	3 cut(s)	34, 253, 648
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	35, 134, 254
AsuC2I	CCSGG	3 cut(s)	39, 93, 163
AsuHPI	GGTGA	2 cut(s)	340, 439
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	203, 268
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcnI	CCSGG	3 cut(s)	39, 93, 163
BcoDI	GTCTC	4 cut(s)	347, 440, 506, 565
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	654, 696
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	3 cut(s)	274, 625, 628
BlsI	GCNGC	3 cut(s)	275, 626, 629
Bme1390I	CCNGG	3 cut(s)	39, 93, 163
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	35, 134, 254
BmiI	GGNNCC	3 cut(s)	31, 37, 97
BmrFI	CCNGG	3 cut(s)	39, 93, 163
BmsI	GCATC	3 cut(s)	51, 177, 679
BpuMI	CCSGG	3 cut(s)	39, 93, 163
BsaAI	YACGTR	1 cut(s)	499
BsaHI	GRCGYC	2 cut(s)	558, 673
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	37, 91, 161
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	410, 440, 568, 598
BseAI	TCCGGA	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	37, 91, 161
BseGI	GGATG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	147, 171, 271
BseXI	GCAGC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	491, 642
BshFI	GGCC	3 cut(s)	36, 255, 650
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	6 cut(s)	33, 39, 93, 163, 375, 466
BslFI	GGGAC	2 cut(s)	38, 525
BsmAI	GTCTC	4 cut(s)	347, 440, 506, 565
BsmBI	CGTCTC	2 cut(s)	506, 565
BsmFI	GGGAC	2 cut(s)	38, 525
BsnI	GGCC	3 cut(s)	36, 255, 650
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	345, 526
BspACI	CCGC	8 cut(s)	63, 225, 271, 274, 292, 341, 627, 630
BspANI	GGCC	3 cut(s)	36, 255, 650
BspEI	TCCGGA	1 cut(s)	374
BspFNI	CGCG	2 cut(s)	491, 642
BspLI	GGNNCC	3 cut(s)	31, 37, 97
BspPI	GGATC	1 cut(s)	534
BspQI	GCTCTTC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	37, 91, 161
BssMI	GATC	2 cut(s)	345, 526
BssNI	GRCGYC	2 cut(s)	558, 673
Bst4CI	ACNGT	5 cut(s)	73, 147, 331, 361, 638
Bst6I	CTCTTC	3 cut(s)	248, 289, 307
BstACI	GRCGYC	2 cut(s)	558, 673
BstAFI	CTTAAG	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	2 cut(s)	491, 642
BstKTI	GATC	2 cut(s)	348, 529
BstMAI	GTCTC	4 cut(s)	347, 440, 506, 565
BstMBI	GATC	2 cut(s)	345, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstSCI	CCNGG	3 cut(s)	37, 91, 161
BstUI	CGCG	2 cut(s)	491, 642
BstV1I	GCAGC	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	36, 255, 650
BtgZI	GCGATG	2 cut(s)	190, 471
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	35, 134, 254
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	258, 439
CviJI	RGCY	8 cut(s)	30, 36, 155, 255, 300, 520, 584, 650
CviKI_1	RGCY	8 cut(s)	30, 36, 155, 255, 300, 520, 584, 650
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	347, 528
DpnII	GATC	2 cut(s)	345, 526
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	3 cut(s)	248, 289, 307
EarI	CTCTTC	3 cut(s)	248, 289, 307
EciI	GGCGGA	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	499
Esp3I	CGTCTC	2 cut(s)	506, 565
FaeI	CATG	2 cut(s)	261, 442
FaiI	YATR	3 cut(s)	259, 440, 505
FaqI	GGGAC	2 cut(s)	38, 525
FatI	CATG	2 cut(s)	257, 438
FauI	CCCGC	5 cut(s)	70, 232, 278, 299, 348
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	274, 625, 628
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	274, 625, 628
FspBI	CTAG	2 cut(s)	654, 696
GluI	GCNGC	3 cut(s)	274, 625, 628
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	36, 255, 650
HapII	CCGG	6 cut(s)	33, 39, 93, 163, 375, 466
HgaI	GACGC	1 cut(s)	662
Hin1I	GRCGYC	2 cut(s)	558, 673
Hin1II	CATG	2 cut(s)	261, 442
HincII	GTYRAC	3 cut(s)	334, 601, 607
HindII	GTYRAC	3 cut(s)	334, 601, 607
HinfI	GANTC	2 cut(s)	371, 619
HpaI	GTTAAC	2 cut(s)	601, 607
HpaII	CCGG	6 cut(s)	33, 39, 93, 163, 375, 466
HphI	GGTGA	2 cut(s)	340, 439
Hpy166II	GTNNAC	7 cut(s)	235, 334, 447, 485, 601, 607, 683
Hpy188I	TCNGA	3 cut(s)	134, 310, 370
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	7 cut(s)	235, 334, 447, 485, 601, 607, 683
Hpy99I	CGWCG	7 cut(s)	50, 53, 203, 218, 314, 335, 642
HpyAV	CCTTC	3 cut(s)	34, 130, 220
HpyCH4III	ACNGT	5 cut(s)	73, 147, 331, 361, 638
HpyCH4IV	ACGT	6 cut(s)	498, 515, 558, 591, 603, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	6 cut(s)	498, 515, 558, 591, 603, 615
Hsp92I	GRCGYC	2 cut(s)	558, 673
Hsp92II	CATG	2 cut(s)	261, 442
Kpn2I	TCCGGA	1 cut(s)	374
KpnI	GGTACC	1 cut(s)	99
KspAI	GTTAAC	2 cut(s)	601, 607
Kzo9I	GATC	2 cut(s)	345, 526
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	5 cut(s)	35, 160, 165, 431, 589
LpnPI	CCDG	9 cut(s)	46, 52, 106, 165, 176, 310, 388, 479, 699
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	3 cut(s)	51, 177, 679
MaeI	CTAG	2 cut(s)	654, 696
MaeII	ACGT	6 cut(s)	498, 515, 558, 591, 603, 615
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	347, 528
MboI	GATC	2 cut(s)	345, 526
MboII	GAAGA	7 cut(s)	187, 235, 238, 255, 276, 279, 294
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	2 cut(s)	383, 535
MluI	ACGCGT	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	135, 333
MnlI	CCTC	9 cut(s)	31, 147, 168, 192, 277, 292, 316, 330, 371
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	4 cut(s)	522, 567, 600, 606
MspA1I	CMGCKG	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	6 cut(s)	33, 39, 93, 163, 375, 466
MspR9I	CCNGG	3 cut(s)	39, 93, 163
MvnI	CGCG	2 cut(s)	491, 642
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NciI	CCSGG	3 cut(s)	39, 93, 163
NdeII	GATC	2 cut(s)	345, 526
NlaIII	CATG	2 cut(s)	261, 442
NlaIV	GGNNCC	3 cut(s)	31, 37, 97
PciSI	GCTCTTC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	3 cut(s)	330, 426, 495
PfeI	GAWTC	2 cut(s)	371, 619
PkrI	GCNGC	3 cut(s)	275, 626, 629
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	499
Psp1406I	AACGTT	2 cut(s)	591, 603
PspCI	CACGTG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	31, 37, 97
PspPI	GGNCC	3 cut(s)	35, 134, 254
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	522, 567, 600, 606
SatI	GCNGC	3 cut(s)	274, 625, 628
Sau3AI	GATC	2 cut(s)	345, 526
Sau96I	GGNCC	3 cut(s)	35, 134, 254
ScrFI	CCNGG	3 cut(s)	39, 93, 163
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	3 cut(s)	51, 177, 679
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	2 cut(s)	383, 535
SsiI	CCGC	8 cut(s)	63, 225, 271, 274, 292, 341, 627, 630
SspMI	CTAG	2 cut(s)	654, 696
StyD4I	CCNGG	3 cut(s)	37, 91, 161
TaaI	ACNGT	5 cut(s)	73, 147, 331, 361, 638
TaiI	ACGT	6 cut(s)	501, 518, 561, 594, 606, 618
TaqI	TCGA	3 cut(s)	171, 333, 550
TasI	AATT	2 cut(s)	383, 535
TauI	GCSGC	2 cut(s)	276, 630
TfiI	GAWTC	2 cut(s)	371, 619
Tru1I	TTAA	4 cut(s)	522, 567, 600, 606
Tru9I	TTAA	4 cut(s)	522, 567, 600, 606
TseI	GCWGC	1 cut(s)	624
TspDTI	ATGAA	2 cut(s)	112, 474
TspGWI	ACGGA	3 cut(s)	418, 553, 624
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	654, 696
ZraI	GACGTC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.