Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Forward (+)

14217693 .. 14218538

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATCCATCATCAAAATTACTTGAAACTTGTCCTCAAACCCCACACACGTTCCCATCAATAATTGCTCTTCACAAACCCAAAGAAAACTCCACCACAACACCTCAAACAAACAAAAACACAAATAGAACCCCAAAACCTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCATCATGGACAGCGCACCCCCCGTTTTAAACAAACCACCGCCACCTTTCCTCATGGACAGCGCACCCACCTTTCTAAACAAACCACCGCCACCGCCACCTTTCCTCATGGACAGCGCACCCACCTTTCTAAACAAACCACCGCCACCTTTCCCAGCACCGCCTCGGAGCGTTGACTTCTCCGCCCTTGAATTTATCCTCGGCCTCATCGCGGTCATCACCATCCCTGCTCTCGTCTACGCCTTCTTCTTCGCCATCAAGTTCCCTCCAAACCCTTTTCGCCGGCGACCCCACCGGACCTCCACCACCGCCCCCGGCCCCACCCAAACTGAACCCAACACCCAAAACAAAAACGACGTAATTTCGGAGCTCAAGTACCAGAAGGAAGCCCACGTTAAGGAAATCGGAACTGAGTGCCCTGTGTGCCTGTCTCTGTTTGCCGACGGCGAAGAGGTCCGGCAGCTCTGCGTCTGCAAACACTCTTTCCACTCTCTGTGCATAAACATGTGGCTTAAGGATCACTCCAACTGCCCCATTTGTCGAGCTTCAGTCGCCGTTGATCGGAGTAATGGTGATAATCGGACGGCGGCTGCTGGAGTAAGAGGCAGTGATGATCTGCAACAAGGTTTGCCTGATGCTTCTGCCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

282

Amino Acids

30.68

Weight (kDa)

8.41

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	202 - 245	1.2e-10	Ring finger domain
zf-C3HC4_2	PF13923	202 - 244	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	203 - 245	1.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	404
AciI	CCGC	9 cut(s)	233, 281, 287, 335, 353, 375, 404, 501, 779
AclWI	GGATC	2 cut(s)	12, 717
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	3 cut(s)	403, 589, 753
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	2 cut(s)	48, 696
AgsI	TTSAA	2 cut(s)	26, 383
AluBI	AGCT	3 cut(s)	562, 655, 737
AluI	AGCT	3 cut(s)	562, 655, 737
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	12, 717
AoxI	GGCC	2 cut(s)	394, 508
ApeKI	GCWGC	2 cut(s)	652, 782
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	3 cut(s)	209, 257, 311
AspS9I	GGNCC	3 cut(s)	489, 509, 646
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	134, 403, 776
AvaII	GGWCC	2 cut(s)	489, 646
BaeGI	GKGCMC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	664, 769
BccI	CCATC	4 cut(s)	16, 64, 422, 455
BceAI	ACGGC	3 cut(s)	652, 731, 792
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	627
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	3 cut(s)	653, 780, 783
BlsI	GCNGC	3 cut(s)	654, 781, 784
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	2 cut(s)	489, 646
BmgT120I	GGNCC	3 cut(s)	489, 509, 646
BmiI	GGNNCC	2 cut(s)	6, 511
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	817
BpmI	CTGGAG	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	356, 391, 505, 837
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	6 cut(s)	476, 506, 551, 581, 748, 778
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 589, 753
Bse118I	RCCGGY	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	356, 391, 505, 837
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	403, 589, 753
BseMII	CTCAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	664, 769
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	396, 510
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	4 cut(s)	475, 487, 507, 649
BslI	CCNNNNNNNGG	3 cut(s)	403, 589, 753
BsmAI	GTCTC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	396, 510
Bsp1286I	GDGCHC	2 cut(s)	564, 611
Bsp143I	GATC	4 cut(s)	4, 709, 751, 805
Bsp19I	CCATGG	1 cut(s)	837
BspACI	CCGC	9 cut(s)	233, 281, 287, 335, 353, 375, 404, 501, 779
BspANI	GGCC	2 cut(s)	396, 510
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	6, 511
BspPI	GGATC	2 cut(s)	12, 717
BspQI	GCTCTTC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	4 cut(s)	356, 391, 505, 837
BssMI	GATC	4 cut(s)	4, 709, 751, 805
BssT1I	CCWWGG	1 cut(s)	837
Bst6I	CTCTTC	2 cut(s)	75, 636
BstAFI	CTTAAG	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	3 cut(s)	209, 257, 311
BstKTI	GATC	4 cut(s)	7, 712, 754, 808
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	4 cut(s)	4, 709, 751, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	615, 743
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	611
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	664, 769
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	396, 510
BtgI	CCRYGG	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	805
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	1 cut(s)	476
CfoI	GCGC	3 cut(s)	209, 257, 311
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	3 cut(s)	489, 509, 646
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	199, 247, 301, 697, 838
CviJI	RGCY	8 cut(s)	396, 510, 562, 581, 655, 703, 737, 782
CviKI_1	RGCY	8 cut(s)	396, 510, 562, 581, 655, 703, 737, 782
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	4 cut(s)	6, 711, 753, 807
DpnII	GATC	4 cut(s)	4, 709, 751, 805
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	75, 636
EarI	CTCTTC	2 cut(s)	75, 636
EciI	GGCGGA	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	2 cut(s)	489, 646
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	837
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	5 cut(s)	202, 250, 304, 700, 841
FaiI	YATR	6 cut(s)	200, 248, 302, 692, 698, 839
FatI	CATG	5 cut(s)	198, 246, 300, 696, 837
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	653, 780, 783
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	653, 780, 783
GlaI	GCGC	3 cut(s)	208, 256, 310
GluI	GCNGC	3 cut(s)	653, 780, 783
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	396, 510
HapII	CCGG	4 cut(s)	475, 487, 507, 649
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	3 cut(s)	209, 257, 311
Hin1II	CATG	5 cut(s)	202, 250, 304, 700, 841
Hin6I	GCGC	3 cut(s)	207, 255, 309
HinP1I	GCGC	3 cut(s)	207, 255, 309
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HpaII	CCGG	4 cut(s)	475, 487, 507, 649
HphI	GGTGA	3 cut(s)	134, 403, 776
Hpy166II	GTNNAC	2 cut(s)	367, 430
Hpy188I	TCNGA	5 cut(s)	360, 559, 599, 756, 774
Hpy8I	GTNNAC	2 cut(s)	367, 430
Hpy99I	CGWCG	2 cut(s)	551, 638
HpyAV	CCTTC	2 cut(s)	445, 568
HpyCH4IV	ACGT	3 cut(s)	50, 549, 585
HpyCH4V	TGCA	3 cut(s)	666, 690, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	615, 743
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	3 cut(s)	50, 549, 585
Hsp92II	CATG	5 cut(s)	202, 250, 304, 700, 841
HspAI	GCGC	3 cut(s)	207, 255, 309
KroI	GCCGGC	1 cut(s)	474
KroNI	GCCGGC	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	4, 709, 751, 805
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	360, 559
Lsp1109I	GCAGC	2 cut(s)	664, 769
LweI	GCATC	1 cut(s)	817
MaeII	ACGT	3 cut(s)	50, 549, 585
MalI	GATC	4 cut(s)	6, 711, 753, 807
MboI	GATC	4 cut(s)	4, 709, 751, 805
MboII	GAAGA	4 cut(s)	62, 430, 433, 653
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	564, 611
MluCI	AATT	4 cut(s)	17, 63, 383, 552
MmeI	TCCRAC	1 cut(s)	741
MreI	CGCCGGCG	1 cut(s)	474
MroNI	GCCGGC	1 cut(s)	474
MseI	TTAA	3 cut(s)	221, 588, 705
MslI	CAYNNNNRTG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	4 cut(s)	475, 487, 507, 649
MspR9I	CCNGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	615, 743
NaeI	GCCGGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	4 cut(s)	4, 709, 751, 805
NgoMIV	GCCGGC	1 cut(s)	474
NlaIII	CATG	5 cut(s)	202, 250, 304, 700, 841
NlaIV	GGNNCC	2 cut(s)	6, 511
NmeAIII	GCCGAG	1 cut(s)	372
NspI	RCATGY	1 cut(s)	700
PciI	ACATGT	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	654, 781, 784
PscI	ACATGT	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	564
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	6, 511
PspPI	GGNCC	3 cut(s)	489, 509, 646
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	695
SacI	GAGCTC	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	221, 588, 705
SatI	GCNGC	3 cut(s)	653, 780, 783
Sau3AI	GATC	4 cut(s)	4, 709, 751, 805
Sau96I	GGNCC	3 cut(s)	489, 509, 646
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	564, 611
SfaNI	GCATC	1 cut(s)	817
SgrAI	CRCCGGYG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	489, 646
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	563, 704
SmoI	CTYRAG	2 cut(s)	563, 704
Sse9I	AATT	4 cut(s)	17, 63, 383, 552
SsiI	CCGC	9 cut(s)	233, 281, 287, 335, 353, 375, 404, 501, 779
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	837
TaiI	ACGT	3 cut(s)	53, 552, 588
TaqI	TCGA	1 cut(s)	733
TasI	AATT	4 cut(s)	17, 63, 383, 552
TauI	GCSGC	1 cut(s)	782
Tru1I	TTAA	3 cut(s)	221, 588, 705
Tru9I	TTAA	3 cut(s)	221, 588, 705
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	2 cut(s)	652, 782
TspRI	CASTG	1 cut(s)	805
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	489, 646
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.