Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052150.1

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Reverse (-)

122 .. 562

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ctcggcctcctcgccgtcatcaccgtccccgccttaatctacgctgtcttcttcaccatcaagtgtcctcccaaccttttccgccatcgaccccgccggagctccactacctcccccgccgacccggcccatgcccggcccgaggtgatttccgacctcaaataccagaaggacgcccacgtcaaggaaatcgggaccgagtgcccggtttgcttatcggtctttgccgacggcgaagaagtgaggcagctcagtgtgtgcaagcactcgtttcatggcacgtgcattaacatgtggctcaaggatcactcgaattgcccgatatgccgcgcgaacatcgccgtcgatcgtagtagtagtaacagcagaacggcggcgtccggtagagaatatcgggatgatctgcaacaaggtttgcccgatgcttccgccatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

8.24

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	2 cut(s)	330, 332
AciI	CCGC	7 cut(s)	30, 82, 94, 117, 328, 374, 429
AclWI	GGATC	1 cut(s)	312
AcvI	CACGTG	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	174, 377
AfiI	CCNNNNNNNGG	3 cut(s)	135, 142, 184
AflIII	ACRYGT	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	181
AluBI	AGCT	2 cut(s)	102, 250
AluI	AGCT	2 cut(s)	102, 250
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	3 cut(s)	4, 126, 137
ApeKI	GCWGC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	127, 138, 195
AsuC2I	CCSGG	3 cut(s)	125, 136, 206
AsuHPI	GGTGA	3 cut(s)	13, 46, 157
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	65, 93
BceAI	ACGGC	3 cut(s)	247, 326, 387
BcnI	CCSGG	3 cut(s)	125, 136, 206
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	248, 328, 375
BlsI	GCNGC	3 cut(s)	249, 329, 376
Bme1390I	CCNGG	3 cut(s)	125, 136, 206
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	127, 138, 195
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	125, 136, 206
BmsI	GCATC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	3 cut(s)	125, 136, 206
BsaAI	YACGTR	1 cut(s)	282
BsaHI	GRCGYC	2 cut(s)	174, 377
BsaJI	CCNNGG	2 cut(s)	141, 432
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 142, 184
BseDI	CCNNGG	2 cut(s)	141, 432
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	135, 142, 184
BseMII	CTCAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	2 cut(s)	330, 332
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	6, 128, 139
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	5 cut(s)	97, 125, 136, 206, 381
BslFI	GGGAC	2 cut(s)	11, 208
BslI	CCNNNNNNNGG	3 cut(s)	135, 142, 184
BsmFI	GGGAC	2 cut(s)	11, 208
BsnI	GGCC	3 cut(s)	6, 128, 139
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	104, 206
Bsp143I	GATC	3 cut(s)	304, 346, 400
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	7 cut(s)	30, 82, 94, 117, 328, 374, 429
BspANI	GGCC	3 cut(s)	6, 128, 139
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	330, 332
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	141, 432
BssMI	GATC	3 cut(s)	304, 346, 400
BssNI	GRCGYC	2 cut(s)	174, 377
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	2 cut(s)	174, 377
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	2 cut(s)	330, 332
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	307, 349, 403
BstMBI	GATC	3 cut(s)	304, 346, 400
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 210, 324, 338
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	123, 134, 204
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	2 cut(s)	330, 332
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	6, 128, 139
BtgI	CCRYGG	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	127, 138, 195
CseI	GACGC	2 cut(s)	182, 366
CviAII	CATG	4 cut(s)	131, 275, 292, 433
CviJI	RGCY	6 cut(s)	6, 102, 128, 139, 250, 298
CviKI_1	RGCY	6 cut(s)	6, 102, 128, 139, 250, 298
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	306, 348, 402
DpnII	GATC	3 cut(s)	304, 346, 400
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	2 cut(s)	71, 418
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	134, 278, 295, 436
FaiI	YATR	5 cut(s)	132, 276, 293, 325, 434
FaqI	GGGAC	2 cut(s)	11, 208
FatI	CATG	4 cut(s)	130, 274, 291, 432
FauI	CCCGC	3 cut(s)	37, 101, 124
Fnu4HI	GCNGC	3 cut(s)	248, 328, 375
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	248, 328, 375
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	248, 328, 375
HaeIII	GGCC	3 cut(s)	6, 128, 139
HapII	CCGG	5 cut(s)	97, 125, 136, 206, 381
HgaI	GACGC	2 cut(s)	182, 366
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	2 cut(s)	174, 377
Hin1II	CATG	4 cut(s)	134, 278, 295, 436
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HpaII	CCGG	5 cut(s)	97, 125, 136, 206, 381
HphI	GGTGA	3 cut(s)	13, 46, 157
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	193, 395
Hpy99I	CGWCG	2 cut(s)	233, 347
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	180, 281
HpyCH4V	TGCA	3 cut(s)	261, 285, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 210, 324, 338
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	180, 281
Hsp92I	GRCGYC	2 cut(s)	174, 377
Hsp92II	CATG	4 cut(s)	134, 278, 295, 436
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	304, 346, 400
LmnI	GCTCC	2 cut(s)	99, 107
LpnPI	CCDG	6 cut(s)	110, 138, 149, 179, 219, 394
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	180, 281
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	306, 348, 402
MboI	GATC	3 cut(s)	304, 346, 400
MboII	GAAGA	3 cut(s)	40, 43, 248
MhlI	GDGCHC	2 cut(s)	104, 206
MluCI	AATT	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	17, 20, 78, 121, 136, 167, 237
MseI	TTAA	2 cut(s)	35, 288
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	5 cut(s)	97, 125, 136, 206, 381
MspR9I	CCNGG	3 cut(s)	125, 136, 206
MvnI	CGCG	2 cut(s)	330, 332
MwoI	GCNNNNNNNGC	4 cut(s)	125, 210, 324, 338
NciI	CCSGG	3 cut(s)	125, 136, 206
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	3 cut(s)	304, 346, 400
NlaIII	CATG	4 cut(s)	134, 278, 295, 436
NlaIV	GGNNCC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	249, 329, 376
Ple19I	CGATCG	1 cut(s)	349
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	282
PscI	ACATGT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	104
PspCI	CACGTG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	3 cut(s)	127, 138, 195
PvuI	CGATCG	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	35, 288
SatI	GCNGC	3 cut(s)	248, 328, 375
Sau3AI	GATC	3 cut(s)	304, 346, 400
Sau96I	GGNCC	3 cut(s)	127, 138, 195
ScrFI	CCNGG	3 cut(s)	125, 136, 206
SduI	GDGCHC	2 cut(s)	104, 206
SetI	ASST	9 cut(s)	78, 104, 113, 147, 159, 183, 252, 284, 415
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	7 cut(s)	30, 82, 94, 117, 328, 374, 429
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	123, 134, 204
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	183, 284
TaqI	TCGA	3 cut(s)	88, 311, 345
TaqII	GACCGA	2 cut(s)	208, 212
TasI	AATT	1 cut(s)	313
TauI	GCSGC	2 cut(s)	330, 377
Tru1I	TTAA	2 cut(s)	35, 288
Tru9I	TTAA	2 cut(s)	35, 288
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	195
XceI	RCATGY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.