Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001193.1

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Forward (+)

81187 .. 81717

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001193.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggagagctcaccggccatcctaaacaaaccacccccgcccttcccggcgccaccgcgcagcgtcgacttctccgccctcgagttcatcctcggcctcctcgccgtcatcaccgtccccgccttaatctacgctgtcttcttcaccatcaagtgtcctcccaaccttttccgccatcgaccccgccggagctccactacctcccccgccgacccggcccatgcccggcccgaggtgatttccgacctcaaataccagaaggacgcccacgtcaaggaaatcgggaccgagtgcccggtttgcttatcggtctttgccgacggcgaagaagtgaggcagctcagtgtgtgcaagcactcgtttcatggcacgtgcattaacatgtggctcaaggatcactcgaattgcccgatatgccgcgcgaacatcgccgtcgatcgtagtagtagtaacagcagaacggcggcgtccggtagagaatatcgggatgatctgcaacaaggtttgcccgatgcttccgccatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.33

Weight (kDa)

7.63

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	3 cut(s)	58, 420, 422
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	3 cut(s)	50, 264, 467
AfiI	CCNNNNNNNGG	3 cut(s)	225, 232, 274
AflIII	ACRYGT	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	3 cut(s)	9, 192, 340
AluI	AGCT	3 cut(s)	9, 192, 340
Alw21I	GWGCWC	2 cut(s)	11, 194
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	2 cut(s)	80, 230
AoxI	GGCC	4 cut(s)	15, 94, 216, 227
ApeKI	GCWGC	2 cut(s)	60, 337
AspLEI	GCGC	3 cut(s)	52, 60, 422
AspS9I	GGNCC	3 cut(s)	217, 228, 285
AsuC2I	CCSGG	4 cut(s)	47, 215, 226, 296
AsuHPI	GGTGA	4 cut(s)	3, 103, 136, 247
AvaI	CYCGRG	2 cut(s)	80, 230
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	11, 194
BbrPI	CACGTG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	11, 194
BbvI	GCAGC	2 cut(s)	72, 349
BccI	CCATC	3 cut(s)	26, 155, 183
BceAI	ACGGC	4 cut(s)	89, 337, 416, 477
BcnI	CCSGG	4 cut(s)	47, 215, 226, 296
BfoI	RGCGCY	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	4 cut(s)	61, 338, 418, 465
BlsI	GCNGC	4 cut(s)	62, 339, 419, 466
Bme1390I	CCNGG	4 cut(s)	47, 215, 226, 296
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	2 cut(s)	80, 230
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	217, 228, 285
BmiI	GGNNCC	2 cut(s)	51, 286
BmrFI	CCNGG	4 cut(s)	47, 215, 226, 296
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	47, 215, 226, 296
BsaAI	YACGTR	1 cut(s)	372
BsaHI	GRCGYC	3 cut(s)	50, 264, 467
BsaJI	CCNNGG	3 cut(s)	91, 231, 522
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 232, 274
Bse118I	RCCGGY	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	91, 231, 522
BseGI	GGATG	3 cut(s)	18, 87, 493
BseLI	CCNNNNNNNGG	3 cut(s)	225, 232, 274
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	72, 349
Bsh1236I	CGCG	3 cut(s)	58, 420, 422
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	17, 96, 218, 229
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	11, 194
BsiHKCI	CYCGRG	2 cut(s)	80, 230
BsiSI	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
BslFI	GGGAC	2 cut(s)	101, 298
BslI	CCNNNNNNNGG	3 cut(s)	225, 232, 274
BsmFI	GGGAC	2 cut(s)	101, 298
BsnI	GGCC	4 cut(s)	17, 96, 218, 229
BsoBI	CYCGRG	2 cut(s)	80, 230
Bsp1286I	GDGCHC	3 cut(s)	11, 194, 296
Bsp143I	GATC	3 cut(s)	394, 436, 490
Bsp19I	CCATGG	1 cut(s)	522
BspANI	GGCC	4 cut(s)	17, 96, 218, 229
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	3 cut(s)	58, 420, 422
BspLI	GGNNCC	2 cut(s)	51, 286
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	91, 231, 522
BssMI	GATC	3 cut(s)	394, 436, 490
BssNI	GRCGYC	3 cut(s)	50, 264, 467
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	3 cut(s)	50, 264, 467
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	18, 87, 493
BstFNI	CGCG	3 cut(s)	58, 420, 422
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	3 cut(s)	52, 60, 422
BstKTI	GATC	3 cut(s)	397, 439, 493
BstMBI	GATC	3 cut(s)	394, 436, 490
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	4 cut(s)	45, 213, 224, 294
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	3 cut(s)	58, 420, 422
BstV1I	GCAGC	2 cut(s)	72, 349
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	17, 96, 218, 229
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	18, 87, 493
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	3 cut(s)	52, 60, 422
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	217, 228, 285
CseI	GACGC	3 cut(s)	52, 272, 456
CviAII	CATG	4 cut(s)	221, 365, 382, 523
CviJI	RGCY	8 cut(s)	9, 17, 96, 192, 218, 229, 340, 388
CviKI_1	RGCY	8 cut(s)	9, 17, 96, 192, 218, 229, 340, 388
DdeI	CTNAG	1 cut(s)	341
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	3 cut(s)	396, 438, 492
DpnII	GATC	3 cut(s)	394, 436, 490
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	3 cut(s)	64, 161, 508
Ecl136II	GAGCTC	2 cut(s)	9, 192
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	11, 194
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	2 cut(s)	9, 192
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	2 cut(s)	80, 230
EcoICRI	GAGCTC	2 cut(s)	9, 192
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	11, 194
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	224, 368, 385, 526
FaiI	YATR	5 cut(s)	222, 366, 383, 415, 524
FaqI	GGGAC	2 cut(s)	101, 298
FatI	CATG	4 cut(s)	220, 364, 381, 522
FauI	CCCGC	4 cut(s)	45, 127, 191, 214
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	61, 338, 418, 465
FokI	GGATG	3 cut(s)	5, 74, 500
FriOI	GRGCYC	2 cut(s)	11, 194
Fsp4HI	GCNGC	4 cut(s)	61, 338, 418, 465
GlaI	GCGC	3 cut(s)	51, 59, 421
GluI	GCNGC	4 cut(s)	61, 338, 418, 465
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	17, 96, 218, 229
HapII	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
HgaI	GACGC	3 cut(s)	52, 272, 456
HhaI	GCGC	3 cut(s)	52, 60, 422
Hin1I	GRCGYC	3 cut(s)	50, 264, 467
Hin1II	CATG	4 cut(s)	224, 368, 385, 526
Hin6I	GCGC	3 cut(s)	50, 58, 420
HinP1I	GCGC	3 cut(s)	50, 58, 420
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HpaII	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
HphI	GGTGA	4 cut(s)	3, 103, 136, 247
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	283, 485
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	3 cut(s)	68, 323, 437
HpyAV	CCTTC	2 cut(s)	52, 253
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	270, 371
HpyCH4V	TGCA	3 cut(s)	351, 375, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	270, 371
Hsp92I	GRCGYC	3 cut(s)	50, 264, 467
Hsp92II	CATG	4 cut(s)	224, 368, 385, 526
HspAI	GCGC	3 cut(s)	50, 58, 420
KasI	GGCGCC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	394, 436, 490
LmnI	GCTCC	2 cut(s)	189, 197
LpnPI	CCDG	8 cut(s)	27, 60, 200, 228, 239, 269, 309, 484
Lsp1109I	GCAGC	2 cut(s)	72, 349
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	2 cut(s)	270, 371
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	396, 438, 492
MboI	GATC	3 cut(s)	394, 436, 490
MboII	GAAGA	3 cut(s)	130, 133, 338
MhlI	GDGCHC	3 cut(s)	11, 194, 296
MluCI	AATT	1 cut(s)	403
Mly113I	GGCGCC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	89, 101, 107, 110, 168, 211, 226, 257, 327
MseI	TTAA	2 cut(s)	125, 378
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
MspR9I	CCNGG	4 cut(s)	47, 215, 226, 296
MvnI	CGCG	3 cut(s)	58, 420, 422
MwoI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	4 cut(s)	47, 215, 226, 296
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	394, 436, 490
NlaIII	CATG	4 cut(s)	224, 368, 385, 526
NlaIV	GGNNCC	2 cut(s)	51, 286
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	80
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	62, 339, 419, 466
Ple19I	CGATCG	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	372
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	11, 194
PspCI	CACGTG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	51, 286
PspPI	GGNCC	3 cut(s)	217, 228, 285
PspXI	VCTCGAGB	1 cut(s)	80
PvuI	CGATCG	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	2 cut(s)	11, 194
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	125, 378
SatI	GCNGC	4 cut(s)	61, 338, 418, 465
Sau3AI	GATC	3 cut(s)	394, 436, 490
Sau96I	GGNCC	3 cut(s)	217, 228, 285
ScrFI	CCNGG	4 cut(s)	47, 215, 226, 296
SduI	GDGCHC	3 cut(s)	11, 194, 296
SfaNI	GCATC	1 cut(s)	502
SfoI	GGCGCC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	80, 389
SmoI	CTYRAG	2 cut(s)	80, 389
Sse9I	AATT	1 cut(s)	403
SspDI	GGCGCC	1 cut(s)	49
SstI	GAGCTC	2 cut(s)	11, 194
StyD4I	CCNGG	4 cut(s)	45, 213, 224, 294
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	273, 374
TaqI	TCGA	5 cut(s)	66, 81, 178, 401, 435
TaqII	GACCGA	2 cut(s)	298, 302
TasI	AATT	1 cut(s)	403
TauI	GCSGC	2 cut(s)	420, 467
Tru1I	TTAA	2 cut(s)	125, 378
Tru9I	TTAA	2 cut(s)	125, 378
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	2 cut(s)	60, 337
TspDTI	ATGAA	2 cut(s)	76, 353
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	285
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.