Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Reverse (-)

11411054 .. 11412282

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTGGCTCAAGGATCACTCGAATTGCCCGATATGCCGCGCGAACATCGCCGTCGATCGGAGTAGTAGTAACAGCAGAACGGCGGCGTCCGGTAGAGAATATCGGGATGATCTGCAACAAGGTTTGCCCGATGCTTCCGCCATGTTTCAGAAACTTACGGACAGAGTTTTAATTTTTTTTCTTGTCAAAACAAATACCAAGGGTAAGTTTTTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

72

Amino Acids

8.17

Weight (kDa)

9.51

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 41
AciI	CCGC	3 cut(s)	37, 83, 138
AclWI	GGATC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	57
AlwI	GGATC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	35, 96
BfaI	CTAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	37, 84
BlsI	GCNGC	2 cut(s)	38, 85
BmsI	GCATC	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	39, 41
Bsh1285I	CGRYCG	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	13, 55, 109
BspACI	CCGC	3 cut(s)	37, 83, 138
BspFNI	CGCG	2 cut(s)	39, 41
BspPI	GGATC	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	13, 55, 109
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	2 cut(s)	39, 41
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	16, 58, 112
BstMBI	GATC	3 cut(s)	13, 55, 109
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 47
BstUI	CGCG	2 cut(s)	39, 41
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	112
CfoI	GCGC	1 cut(s)	41
CseI	GACGC	1 cut(s)	75
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
DpnI	GATC	3 cut(s)	15, 57, 111
DpnII	GATC	3 cut(s)	13, 55, 109
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	34, 143
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	37, 84
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	37, 84
FspBI	CTAG	1 cut(s)	217
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	37, 84
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	60, 150
Hpy188III	TCNNGA	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 47
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	13, 55, 109
LpnPI	CCDG	1 cut(s)	103
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	3 cut(s)	15, 57, 111
MboI	GATC	3 cut(s)	13, 55, 109
MluCI	AATT	2 cut(s)	22, 171
MseI	TTAA	1 cut(s)	170
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	2 cut(s)	39, 41
MwoI	GCNNNNNNNGC	2 cut(s)	33, 47
NdeII	GATC	3 cut(s)	13, 55, 109
NlaIII	CATG	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	38, 85
Ple19I	CGATCG	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	37, 84
Sau3AI	GATC	3 cut(s)	13, 55, 109
SetI	ASST	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	22, 171
SsiI	CCGC	3 cut(s)	37, 83, 138
SspMI	CTAG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	2 cut(s)	20, 54
TasI	AATT	2 cut(s)	22, 171
TauI	GCSGC	2 cut(s)	39, 86
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	173
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.