Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Forward (+)

15966084 .. 15966661

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGACAGCCCACCCACCGTTTTGAACAAACCACCGCCACCTTTCCCAGCACCGCCGCGAAGCGTCGACTTCTCTGCCCTCGAATTCATCCTTGGCCTCATCGCCGTCATCACCATCCCCGCTCTCATCTACGCCTTCTTCTTCGCCATCAAGTGCCCTTCCAACCCTTTCCGCCGGCGACCCCGCAGGACCTCCACCACCGTCCCCAGCCCCACCCAACACGAACCCAACACCGAAAACAAAAAAGACGTCATTTCGGAGCTCAAGTACCAGAAGGAAACTCACGTTAAGGAAATCGGAACTGAGTGCCCTGTTTGCTTGTCTCTGTTTGCCGACGGCGAGGAGGTCCGGCAGCTCTGCGTCTGCAAACACTCTTTCCACGCTCTGTGCATAAACATGTGGCTTAAGGAACACTCCAACTGCCCCATTTGTCGAGCTTCGGTTGCCGTTGATCGGAGCAGTAGTAATAATCGGACGGCGCGTGCTGCAGGTTTGACTATTAATTGTTTCTGGGTTTTGGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.52

Weight (kDa)

8.78

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	102 - 145	2e-11	Ring finger domain
zf-C3HC4_2	PF13923	102 - 144	9.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	102 - 131	6e-06	RING-like zinc finger
zf-rbx1	PF12678	103 - 145	5.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	2 cut(s)	58, 481
AciI	CCGC	6 cut(s)	35, 53, 56, 120, 172, 184
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	262, 355, 437
AluI	AGCT	3 cut(s)	262, 355, 437
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	352, 485
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AseI	ATTAAT	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	189, 346
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	189, 346
BaeGI	GKGCMC	2 cut(s)	158, 311
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	364, 472
BccI	CCATC	2 cut(s)	122, 155
BceAI	ACGGC	4 cut(s)	89, 352, 431, 492
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	3 cut(s)	56, 353, 486
BlsI	GCNGC	3 cut(s)	57, 354, 487
Bme18I	GGWCC	2 cut(s)	189, 346
BmgT120I	GGNCC	2 cut(s)	189, 346
BpuEI	CTTGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	87, 114
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	2 cut(s)	158, 311
BseXI	GCAGC	2 cut(s)	364, 472
BseYI	CCCAGC	2 cut(s)	46, 206
Bsh1236I	CGCG	2 cut(s)	58, 481
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	175, 349
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	158, 264, 311
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	6 cut(s)	35, 53, 56, 120, 172, 184
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	58, 481
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	19, 202
BstACI	GRCGYC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	176, 483
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	87, 114
BstFNI	CGCG	2 cut(s)	58, 481
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 443, 485
BstNSI	RCATGY	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	2 cut(s)	158, 311
BstUI	CGCG	2 cut(s)	58, 481
BstV1I	GCAGC	2 cut(s)	364, 472
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	87, 114
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	176, 483
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	189, 346
CseI	GACGC	2 cut(s)	52, 349
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	8 cut(s)	9, 96, 210, 262, 355, 403, 437, 524
CviKI_1	RGCY	8 cut(s)	9, 96, 210, 262, 355, 403, 437, 524
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	189, 346
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	400
FaiI	YATR	2 cut(s)	392, 398
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	396
FauI	CCCGC	2 cut(s)	127, 191
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	56, 353, 486
FokI	GGATG	2 cut(s)	74, 101
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	56, 353, 486
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	3 cut(s)	56, 353, 486
GsaI	CCCAGC	2 cut(s)	50, 210
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	175, 349
HgaI	GACGC	2 cut(s)	52, 349
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	175, 349
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	259, 299, 456, 474
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	2 cut(s)	68, 338
HpyAV	CCTTC	3 cut(s)	145, 168, 268
HpyCH4III	ACNGT	2 cut(s)	19, 202
HpyCH4IV	ACGT	2 cut(s)	249, 285
HpyCH4V	TGCA	3 cut(s)	366, 390, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 443, 485
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	249, 285
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	479
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	259, 456
LpnPI	CCDG	9 cut(s)	60, 172, 188, 220, 284, 324, 362, 474, 496
Lsp1109I	GCAGC	2 cut(s)	364, 472
MaeII	ACGT	2 cut(s)	249, 285
MalI	GATC	1 cut(s)	453
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	451
MboII	GAAGA	2 cut(s)	130, 133
MhlI	GDGCHC	3 cut(s)	158, 264, 311
MluCI	AATT	2 cut(s)	83, 502
MmeI	TCCRAC	2 cut(s)	186, 441
MnlI	CCTC	5 cut(s)	89, 107, 202, 334, 337
MreI	CGCCGGCG	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	4 cut(s)	288, 405, 501, 526
MslI	CAYNNNNRTG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	175, 349
MvnI	CGCG	2 cut(s)	58, 481
MwoI	GCNNNNNNNGC	3 cut(s)	315, 443, 485
NaeI	GCCGGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	451
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	400
PciI	ACATGT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	57, 354, 487
PpuMI	RGGWCCY	1 cut(s)	189
PscI	ACATGT	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	46, 206
PspPI	GGNCC	2 cut(s)	189, 346
PspPPI	RGGWCCY	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	288, 405, 501, 526
SatI	GCNGC	3 cut(s)	56, 353, 486
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	189, 346
SduI	GDGCHC	3 cut(s)	158, 264, 311
SetI	ASST	9 cut(s)	43, 194, 252, 264, 288, 348, 357, 439, 493
SfcI	CTRYAG	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	189, 346
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	263, 404
SmoI	CTYRAG	2 cut(s)	263, 404
Sse9I	AATT	2 cut(s)	83, 502
SsiI	CCGC	6 cut(s)	35, 53, 56, 120, 172, 184
SstI	GAGCTC	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	19, 202
TaiI	ACGT	2 cut(s)	252, 288
TaqI	TCGA	3 cut(s)	66, 81, 433
TasI	AATT	2 cut(s)	83, 502
TauI	GCSGC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	288, 405, 501, 526
Tru9I	TTAA	4 cut(s)	288, 405, 501, 526
TseI	GCWGC	2 cut(s)	352, 485
TspDTI	ATGAA	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	2 cut(s)	189, 346
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.