Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012772

Physical Location & Seq

Genomic Coordinates Forward (+)

68440144 .. 68442114

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTGGTGCAGAGCGGATGATGGTGACAGAGCCGACGACGACGTTGCCGTGGAGGTACCGGAGAGGCGAAAGCTTCTGGAGCAAGAGGCCATCGCCGTTCGGTCACTGAAGCCTCGGGTCTTCTCGTTCCAGATGCGAATCGGAGTCGCCTGTTTCCCATGGATCAATTGCTTCATGGGGTTTGAGTTGTCGCCTACTCCCCGTCGCTCGGTTGCAGGGCCCTTCCCAGCGCCACAGCGCAGCGTCGACTTTTCCGCCCTCGAGTTCATCTGCCGCCTCCTTGCCGTCATCACCATCCCCACCTTAATCTACGCTGTCTTCTTCAGCATTAAGTGTCCTCCAACCTTCTCCACCGTCGACCCAGTTGGAGCTCCACCACCACCCCCGCCGACCCGACCCGAGTTGATTTCCGATCTCAAATACCAAAAGGACTCCCACGTCAAGGAAATCGGGACCCAGTGCCCGATTTGCTTATCGGTATTCTCTGAAGACGAAGAAGTGAGGCAGCTCAGTGTGTGCAAGCACTTGTTTCACGGCACATGCATTAACATGTGGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

188

Amino Acids

21.1

Weight (kDa)

5.93

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	153 - 186	2.3e-08	Ring finger domain
zf-RING_11	PF17123	153 - 182	1.4e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37580
fragaria_vesca	FvH4_6g14030
malus_domestica	MD12G1078700.v1.1
prunus_persica	Prupe.6G253000_v2.0.a1
pyrus_communis	pycom04g11330 pycom12g13480
rosa_chinensis	RchiOBHm_Chr3g0466911
rosa_laevigata	RLG00000020757 RLG00000024546
rosa_multiflora	Rmu_co8052150.1_g000001 Rmu_sc0001193.1_g000017
rosa_roxburghii	Rroxscaffold_6G00414070
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132100 Rh3BG153200 Rh3CG153200 Rh3DG154100
rosa_wichuraiana	Rw3G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	246, 357
AciI	CCGC	4 cut(s)	14, 255, 274, 386
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	3 cut(s)	128, 307, 507
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	208, 442
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	559
AjiI	CACGTC	1 cut(s)	439
AluBI	AGCT	3 cut(s)	73, 371, 508
AluI	AGCT	3 cut(s)	73, 371, 508
Alw21I	GWGCWC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	3 cut(s)	114, 260, 398
AoxI	GGCC	2 cut(s)	87, 218
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	240, 505
Asp718I	GGTACC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	232, 240
AspS9I	GGNCC	3 cut(s)	218, 219, 453
AsuHPI	GGTGA	2 cut(s)	35, 283
AvaI	CYCGRG	3 cut(s)	114, 260, 398
AvaII	GGWCC	1 cut(s)	453
BaeGI	GKGCMC	2 cut(s)	222, 464
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	222, 373
BbsI	GAAGAC	3 cut(s)	112, 310, 495
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	252, 517
BccI	CCATC	3 cut(s)	14, 98, 302
BceAI	ACGGC	4 cut(s)	32, 80, 269, 550
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	3 cut(s)	241, 274, 506
BlsI	GCNGC	3 cut(s)	242, 275, 507
Bme18I	GGWCC	1 cut(s)	453
BmeT110I	CYCGRG	3 cut(s)	114, 260, 398
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	218, 219, 453
BmiI	GGNNCC	4 cut(s)	57, 220, 454, 455
BmrI	ACTGGG	2 cut(s)	356, 451
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	2 cut(s)	356, 451
BpiI	GAAGAC	3 cut(s)	112, 310, 495
BpmI	CTGGAG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	48, 113, 158
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 442
Bse1I	ACTGG	2 cut(s)	362, 457
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	48, 113, 158
BseGI	GGATG	2 cut(s)	22, 294
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	208, 442
BseMII	CTCAG	1 cut(s)	523
BseNI	ACTGG	2 cut(s)	362, 457
BseSI	GKGCMC	2 cut(s)	222, 464
BseXI	GCAGC	2 cut(s)	252, 517
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	89, 220
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	3 cut(s)	114, 260, 398
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	208, 442
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	89, 220
BsoBI	CYCGRG	3 cut(s)	114, 260, 398
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	222, 373, 464
Bsp143I	GATC	2 cut(s)	162, 412
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	4 cut(s)	14, 255, 274, 386
BspANI	GGCC	2 cut(s)	89, 220
BspCNI	CTCAG	1 cut(s)	522
BspLI	GGNNCC	4 cut(s)	57, 220, 454, 455
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	362, 457
BssECI	CCNNGG	3 cut(s)	48, 113, 158
BssMI	GATC	2 cut(s)	162, 412
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	2 cut(s)	48, 158
BstF5I	GGATG	2 cut(s)	22, 294
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	232, 240
BstKTI	GATC	2 cut(s)	165, 415
BstMBI	GATC	2 cut(s)	162, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 468
BstNSI	RCATGY	2 cut(s)	543, 553
BstSLI	GKGCMC	2 cut(s)	222, 464
BstV1I	GCAGC	2 cut(s)	252, 517
BstV2I	GAAGAC	3 cut(s)	112, 310, 495
BsuRI	GGCC	2 cut(s)	89, 220
BtgI	CCRYGG	2 cut(s)	48, 158
BtgZI	GCGATG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	22, 294
BtsIMutI	CAGTG	3 cut(s)	104, 464, 517
Cac8I	GCNNGC	1 cut(s)	521
CfoI	GCGC	2 cut(s)	232, 240
Cfr13I	GGNCC	3 cut(s)	218, 219, 453
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	4 cut(s)	159, 175, 540, 550
CviJI	RGCY	7 cut(s)	32, 73, 89, 112, 220, 371, 508
CviKI_1	RGCY	7 cut(s)	32, 73, 89, 112, 220, 371, 508
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	2 cut(s)	164, 414
DpnII	GATC	2 cut(s)	162, 412
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	222, 373
Eco47I	GGWCC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	128, 307, 507
Eco88I	CYCGRG	3 cut(s)	114, 260, 398
EcoICRI	GAGCTC	1 cut(s)	371
EcoO109I	RGGNCCY	3 cut(s)	218, 219, 453
EcoT14I	CCWWGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	222, 373
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	4 cut(s)	162, 178, 543, 553
FaiI	YATR	4 cut(s)	160, 176, 541, 551
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	158, 174, 539, 549
FauI	CCCGC	1 cut(s)	393
FblI	GTMKAC	2 cut(s)	246, 357
Fnu4HI	GCNGC	3 cut(s)	241, 274, 506
FokI	GGATG	2 cut(s)	29, 281
FriOI	GRGCYC	2 cut(s)	222, 373
Fsp4HI	GCNGC	3 cut(s)	241, 274, 506
GlaI	GCGC	2 cut(s)	231, 239
GluI	GCNGC	3 cut(s)	241, 274, 506
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	89, 220
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	232, 240
Hin1II	CATG	4 cut(s)	162, 178, 543, 553
Hin6I	GCGC	2 cut(s)	230, 238
HinP1I	GCGC	2 cut(s)	230, 238
HincII	GTYRAC	2 cut(s)	247, 358
HindII	GTYRAC	2 cut(s)	247, 358
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	138, 144, 431
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	35, 283
Hpy166II	GTNNAC	2 cut(s)	247, 358
Hpy188I	TCNGA	3 cut(s)	143, 412, 487
Hpy188III	TCNNGA	3 cut(s)	77, 130, 451
Hpy8I	GTNNAC	2 cut(s)	247, 358
Hpy99I	CGWCG	6 cut(s)	38, 41, 44, 207, 248, 359
HpyAV	CCTTC	2 cut(s)	232, 355
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	42, 438
HpyCH4V	TGCA	4 cut(s)	9, 215, 519, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 468
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	2 cut(s)	42, 438
Hsp92II	CATG	4 cut(s)	162, 178, 543, 553
HspAI	GCGC	2 cut(s)	230, 238
KflI	GGGWCCC	1 cut(s)	453
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	162, 412
LmnI	GCTCC	3 cut(s)	79, 368, 376
LpnPI	CCDG	8 cut(s)	62, 72, 143, 163, 201, 240, 375, 470
Lsp1109I	GCAGC	2 cut(s)	252, 517
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	2 cut(s)	42, 438
MaeIII	GTNAC	2 cut(s)	23, 102
MalI	GATC	2 cut(s)	164, 414
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	2 cut(s)	162, 412
MboII	GAAGA	5 cut(s)	112, 310, 313, 500, 506
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	222, 373, 464
MluCI	AATT	2 cut(s)	166, 559
MlyI	GAGTC	2 cut(s)	153, 425
MmeI	TCCRAC	2 cut(s)	346, 365
MnlI	CCTC	8 cut(s)	46, 57, 79, 123, 269, 287, 348, 495
Mph1103I	ATGCAT	1 cut(s)	545
MseI	TTAA	4 cut(s)	305, 330, 546, 562
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	79, 468
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	162, 412
NlaIII	CATG	4 cut(s)	162, 178, 543, 553
NlaIV	GGNNCC	4 cut(s)	57, 220, 454, 455
NmuCI	GTSAC	2 cut(s)	23, 102
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	2 cut(s)	543, 553
PaeR7I	CTCGAG	1 cut(s)	260
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	242, 275, 507
PleI	GAGTC	2 cut(s)	152, 425
PpsI	GAGTC	2 cut(s)	152, 425
PpuMI	RGGWCCY	1 cut(s)	453
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	57, 220, 454, 455
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	218, 219, 453
PspPPI	RGGWCCY	1 cut(s)	453
PspXI	VCTCGAGB	1 cut(s)	260
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	373
SalI	GTCGAC	2 cut(s)	245, 356
SaqAI	TTAA	4 cut(s)	305, 330, 546, 562
SatI	GCNGC	3 cut(s)	241, 274, 506
Sau3AI	GATC	2 cut(s)	162, 412
Sau96I	GGNCC	3 cut(s)	218, 219, 453
SchI	GAGTC	2 cut(s)	153, 425
SduI	GDGCHC	3 cut(s)	222, 373, 464
SetI	ASST	8 cut(s)	45, 57, 75, 305, 347, 373, 441, 510
SfaNI	GCATC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	453
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	166, 559
SsiI	CCGC	4 cut(s)	14, 255, 274, 386
SstI	GAGCTC	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	45, 441
TaqI	TCGA	3 cut(s)	246, 261, 357
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	166, 559
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	4 cut(s)	305, 330, 546, 562
Tru9I	TTAA	4 cut(s)	305, 330, 546, 562
TscAI	CASTG	3 cut(s)	111, 464, 517
TseFI	GTSAC	2 cut(s)	23, 102
TseI	GCWGC	2 cut(s)	240, 505
Tsp45I	GTSAC	2 cut(s)	23, 102
TspDTI	ATGAA	2 cut(s)	163, 256
TspRI	CASTG	3 cut(s)	111, 464, 517
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	2 cut(s)	543, 553
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	246, 357
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.