Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009890

Physical Location & Seq

Genomic Coordinates Forward (+)

15856528 .. 15858986

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAGGATGTGCAATGAATCTTCAGTTCTCAAGTGTTGTGAAAGTGAGAAACGAGATCTCTTCTTTTGGGATTTGTAATCGAGACTTTGTATTTAGAGATTTAGCCAAGGCAATGAAAGTGCCTGTTTTGCGGATTAGAGGTGGTTCAGGTAGGCAAAGGTCGAGGCTTTTCGTGGTTAATATGTCTCAATCTCCCATTGAGCCACAATCTGGTGGTTTTGCGGCTACTGAACAAATTAAAGGAGAAGGTGATAATAGTATCTTAGGGAAAGACAATGTTAGAAACTTAGGAACTGATCAGCTTGAGAATTTGGATATTGATGGTAATGTTGGAGATGGTTTTAATGGTAGTGATGGTAATGGGGGTGGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGGTGAAGACTACGAAGAAAAAGAGTTTGGACCGATATTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGCTAGAGGAGCTACTCTTCCATCTGATATGTTGGAAGCTGCTAAGAACTATGGGATCCGCAAAGTGCTTCTCCTTAGGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGCTATAAGATCATGGGCTATGCTTCGTAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGGCTGAGATAGTCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGGGAAAGATTTCTGGGCGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAACTGTGGTTAACATTGCTCTGGTCGGTATGTTGGCGCCTTATGTTCGTTTTGGACAACCTTCCGCATCACCTGGCTTCTTAGGACGCATGGTTTTTGCATATAATGCGCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCAGGATGTAGATTTTCCGCTCAACAGAGACTTGCTACATACTTCTACAAGGGTATAATGTATGGTGCAGTTGGATTTGGATGTGGCATTGTAGGTCAAGGCATTGCAAATCTTATCATGACTGCCAAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009648 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

347

Amino Acids

37.35

Weight (kDa)

5.57

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RETICULATA-like	PF11891	208 - 347	1.2e-45	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37860 AT2G37860 AT2G37860 AT2G37860
fragaria_vesca	FvH4_6g12860
malus_domestica	MD04G1137400.v1.1
prunus_persica	Prupe.6G263400_v2.0.a1 Prupe.6G263400_v2.0.a1
pyrus_communis	pycom04g12570
rosa_chinensis	RchiOBHm_Chr3g0464891
rosa_laevigata	RLG00000024667
rosa_multiflora	Rmu_co8018042.1_g000001 Rmu_sc0007114.1_g000002 Rmu_sc0021790.1_g000001 Rmu_sc0026665.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415370
rosa_rugosa	Rorug03G0074500
rosa_samantha	Rh3BG137400 Rh3CG140000 Rh3DG138800
rosa_wichuraiana	Rw3G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	929
AciI	CCGC	6 cut(s)	133, 224, 535, 734, 834, 927
AclWI	GGATC	3 cut(s)	526, 539, 632
AcsI	RAATTY	2 cut(s)	310, 449
AcuI	CTGAAG	3 cut(s)	8, 495, 723
AcyI	GRCGYC	1 cut(s)	806
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	448, 455, 655, 710, 899
AjnI	CCWGG	2 cut(s)	841, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	6 cut(s)	304, 479, 488, 515, 573, 902
AluI	AGCT	6 cut(s)	304, 479, 488, 515, 573, 902
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	4 cut(s)	78, 192, 464, 931
AlwI	GGATC	3 cut(s)	526, 539, 632
AoxI	GGCC	1 cut(s)	908
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	310, 449
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	2 cut(s)	808, 880
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	5 cut(s)	263, 410, 416, 422, 831
AvaII	GGWCC	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	805
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	6 cut(s)	317, 332, 350, 395, 505, 649
BciT130I	CCWGG	2 cut(s)	843, 912
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	4 cut(s)	78, 192, 464, 931
BfaI	CTAG	2 cut(s)	480, 885
BfoI	RGCGCY	1 cut(s)	809
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	2 cut(s)	225, 516
BlpI	GCTNAGC	1 cut(s)	574
BlsI	GCNGC	2 cut(s)	226, 517
Bme1390I	CCNGG	2 cut(s)	843, 912
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	533, 807
BmrFI	CCNGG	2 cut(s)	843, 912
BmsI	GCATC	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	574
BpuEI	CTTGAG	2 cut(s)	16, 326
BsaHI	GRCGYC	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse21I	CCTNAGG	1 cut(s)	551
Bse3DI	GCAATG	4 cut(s)	21, 120, 783, 1011
BseBI	CCWGG	2 cut(s)	843, 912
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	14, 920, 995
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	4 cut(s)	21, 120, 783, 1011
BseMII	CTCAG	2 cut(s)	588, 657
BseRI	GAGGAG	3 cut(s)	390, 405, 498
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	1 cut(s)	910
BshNI	GGYRCC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	4 cut(s)	78, 192, 464, 931
BsnI	GGCC	1 cut(s)	910
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
Bsp1720I	GCTNAGC	1 cut(s)	574
BspACI	CCGC	6 cut(s)	133, 224, 535, 734, 834, 927
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	2 cut(s)	587, 658
BspHI	TCATGA	2 cut(s)	462, 1026
BspLI	GGNNCC	2 cut(s)	533, 807
BspPI	GGATC	3 cut(s)	526, 539, 632
BspT107I	GGYRCC	1 cut(s)	805
BsrBI	CCGCTC	1 cut(s)	929
BsrDI	GCAATG	4 cut(s)	21, 120, 783, 1011
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
BssNI	GRCGYC	1 cut(s)	806
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	843, 912
Bst4CI	ACNGT	3 cut(s)	697, 775, 1041
Bst6I	CTCTTC	4 cut(s)	67, 450, 498, 656
BstACI	GRCGYC	1 cut(s)	806
BstAPI	GCANNNNNTGC	2 cut(s)	11, 875
BstDEI	CTNAG	7 cut(s)	265, 289, 519, 551, 574, 666, 850
BstF5I	GGATG	3 cut(s)	14, 920, 995
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	2 cut(s)	808, 880
BstKTI	GATC	6 cut(s)	60, 301, 534, 605, 640, 760
BstMAI	GTCTC	4 cut(s)	78, 192, 464, 931
BstMBI	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 130, 485, 698, 875
BstNI	CCWGG	2 cut(s)	843, 912
BstSCI	CCNGG	2 cut(s)	841, 910
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	57, 531
BstYI	RGATCY	2 cut(s)	57, 531
Bsu36I	CCTNAGG	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	910
BtsCI	GGATG	3 cut(s)	14, 920, 995
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	2 cut(s)	693, 895
CciI	TCATGA	2 cut(s)	462, 1026
CfoI	GCGC	2 cut(s)	808, 880
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	4 cut(s)	463, 606, 859, 1027
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	7 cut(s)	265, 289, 519, 551, 574, 666, 850
DinI	GGCGCC	1 cut(s)	807
DpnI	GATC	6 cut(s)	59, 300, 533, 604, 639, 759
DpnII	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
Eam1104I	CTCTTC	4 cut(s)	67, 450, 498, 656
EarI	CTCTTC	4 cut(s)	67, 450, 498, 656
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	8, 495, 723
Eco81I	CCTNAGG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	841, 910
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	575
EgeI	GGCGCC	1 cut(s)	807
EheI	GGCGCC	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	4 cut(s)	466, 609, 862, 1030
FatI	CATG	4 cut(s)	462, 605, 858, 1026
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	225, 516
FokI	GGATG	3 cut(s)	21, 927, 1002
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	225, 516
FspBI	CTAG	2 cut(s)	480, 885
GlaI	GCGC	2 cut(s)	807, 879
GluI	GCNGC	2 cut(s)	225, 516
HaeII	RGCGCY	1 cut(s)	809
HaeIII	GGCC	1 cut(s)	910
HgaI	GACGC	1 cut(s)	864
HhaI	GCGC	2 cut(s)	808, 880
Hin1I	GRCGYC	1 cut(s)	806
Hin1II	CATG	4 cut(s)	466, 609, 862, 1030
Hin6I	GCGC	2 cut(s)	806, 878
HinP1I	GCGC	2 cut(s)	806, 878
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	2 cut(s)	19, 680
HpaI	GTTAAC	1 cut(s)	781
HphI	GGTGA	5 cut(s)	263, 410, 416, 422, 831
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	3 cut(s)	83, 463, 1027
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	5 cut(s)	242, 389, 401, 460, 840
HpyCH4III	ACNGT	3 cut(s)	697, 775, 1041
HpyCH4V	TGCA	5 cut(s)	14, 568, 869, 977, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 130, 485, 698, 875
HpyF3I	CTNAG	7 cut(s)	265, 289, 519, 551, 574, 666, 850
Hsp92I	GRCGYC	1 cut(s)	806
Hsp92II	CATG	4 cut(s)	466, 609, 862, 1030
HspAI	GCGC	2 cut(s)	806, 878
KasI	GGCGCC	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	2 cut(s)	480, 885
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	6 cut(s)	59, 300, 533, 604, 639, 759
MbiI	CCGCTC	1 cut(s)	929
MboI	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
MboII	GAAGA	7 cut(s)	14, 54, 425, 434, 467, 485, 643
MflI	RGATCY	2 cut(s)	57, 531
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	3 cut(s)	237, 310, 449
Mly113I	GGCGCC	1 cut(s)	806
MmeI	TCCRAC	4 cut(s)	313, 489, 748, 961
MnlI	CCTC	9 cut(s)	134, 159, 368, 371, 383, 451, 476, 659, 710
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	180, 240, 345, 780
MspR9I	CCNGG	2 cut(s)	843, 912
MvaI	CCWGG	2 cut(s)	843, 912
MwoI	GCNNNNNNNGC	5 cut(s)	11, 130, 485, 698, 875
NarI	GGCGCC	1 cut(s)	806
NdeII	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
NlaIII	CATG	4 cut(s)	466, 609, 862, 1030
NlaIV	GGNNCC	2 cut(s)	533, 807
PagI	TCATGA	2 cut(s)	462, 1026
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	19, 680
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	226, 517
PluTI	GGCGCC	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	841, 910
PspGI	CCWGG	2 cut(s)	841, 910
PspN4I	GGNNCC	2 cut(s)	533, 807
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	57, 531
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	575
SaqAI	TTAA	4 cut(s)	180, 240, 345, 780
SatI	GCNGC	2 cut(s)	225, 516
Sau3AI	GATC	6 cut(s)	57, 298, 531, 602, 637, 757
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	843, 912
SduI	GDGCHC	1 cut(s)	575
SfaNI	GCATC	1 cut(s)	845
SfoI	GGCGCC	1 cut(s)	807
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	31, 305
SmoI	CTYRAG	2 cut(s)	31, 305
Sse9I	AATT	3 cut(s)	237, 310, 449
SsiI	CCGC	6 cut(s)	133, 224, 535, 734, 834, 927
SspDI	GGCGCC	1 cut(s)	805
SspMI	CTAG	2 cut(s)	480, 885
SstI	GAGCTC	1 cut(s)	575
StyD4I	CCNGG	2 cut(s)	841, 910
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	697, 775, 1041
TaqI	TCGA	2 cut(s)	82, 164
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	3 cut(s)	237, 310, 449
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	19, 680
Tru1I	TTAA	4 cut(s)	180, 240, 345, 780
Tru9I	TTAA	4 cut(s)	180, 240, 345, 780
TscAI	CASTG	2 cut(s)	700, 895
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	32, 131, 479
TspRI	CASTG	2 cut(s)	700, 895
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	310, 449
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	480, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.