Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026665.1

Orthogroup ID

OG0009890

Physical Location & Seq

Genomic Coordinates Reverse (-)

1275 .. 2470

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026665.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgtgtttgagtctctataaacactgtattgcgattgccacattatccagtatatatggtaatcatcattcactgaatgctgtacagattgttattgattcttgttgcgctacatttgctgaagttcaaaagaggggaaaagatttttgggccgaatttgagttgtatgttgcagatcttttggttggggtagtggttaatgttgctttggttgggatgttggcaccctatgctcgtattgggcaaccatcactatcaaaagggttccttggacatatgcaacatgcttacggagctcttcctagcagcgtgtttgaagctgaaaggtcaggatgtagatattctgtaaaacagagaattgccacgtacttttttaaggggatcttatatggagcagtaggctttggatgtggtattattggccaaggaattgcaaatttaatcatgactgctaagcggagcataaagaaatcagaagaagacatacctgtgccacctctaattaagagtgcagctctttggggtgttttccttgccgtgtcttcaaacacccgctatcagataatcaatggacttgaacgcttggtagagacatcgcctttggcaaagcagatcccgcctgtagcattggctttcactgttggtgtacgattcgccaacaatgtgtatggcggaatgcagttcgtagactgggctagatggagtggggtgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

238

Amino Acids

25.9

Weight (kDa)

9.14

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37860 AT2G37860 AT2G37860 AT2G37860
fragaria_vesca	FvH4_6g12860
malus_domestica	MD04G1137400.v1.1
prunus_persica	Prupe.6G263400_v2.0.a1 Prupe.6G263400_v2.0.a1
pyrus_communis	pycom04g12570
rosa_chinensis	RchiOBHm_Chr3g0464891
rosa_laevigata	RLG00000024667
rosa_multiflora	Rmu_co8018042.1_g000001 Rmu_sc0007114.1_g000002 Rmu_sc0021790.1_g000001 Rmu_sc0026665.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415370
rosa_rugosa	Rorug03G0074500
rosa_samantha	Rh3BG137400 Rh3CG140000 Rh3DG138800
rosa_wichuraiana	Rw3G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	4 cut(s)	457, 553, 617, 672
AclWI	GGATC	2 cut(s)	389, 607
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	155, 436
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	3 cut(s)	84, 368, 648
AgsI	TTSAA	4 cut(s)	128, 317, 546, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	3 cut(s)	296, 320, 515
AluI	AGCT	3 cut(s)	296, 320, 515
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	17, 584
AlwI	GGATC	2 cut(s)	389, 607
AoxI	GGCC	2 cut(s)	150, 421
ApeKI	GCWGC	2 cut(s)	306, 512
ApoI	RAATTY	2 cut(s)	155, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbsI	GAAGAC	2 cut(s)	486, 534
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	318, 524
BccI	CCATC	2 cut(s)	256, 693
BceAI	ACGGC	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	17, 584
BfaI	CTAG	2 cut(s)	303, 696
BfmI	CTRYAG	1 cut(s)	621
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	307, 513
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	2 cut(s)	308, 514
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	225, 266
BmrI	ACTGGG	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	2 cut(s)	486, 534
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
Bpu1102I	GCTNAGC	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	268, 424
Bse1I	ACTGG	2 cut(s)	48, 695
BseDI	CCNNGG	2 cut(s)	268, 424
BseGI	GGATG	3 cut(s)	222, 338, 413
BseNI	ACTGG	2 cut(s)	48, 695
BseXI	GCAGC	2 cut(s)	318, 524
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	152, 423
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	17, 584
BsmI	GAATGC	2 cut(s)	82, 681
BsnI	GGCC	2 cut(s)	152, 423
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	175, 381, 612
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	4 cut(s)	457, 553, 617, 672
BspANI	GGCC	2 cut(s)	152, 423
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	225, 266
BspPI	GGATC	2 cut(s)	389, 607
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	48, 695
BssECI	CCNNGG	2 cut(s)	268, 424
BssMI	GATC	3 cut(s)	175, 381, 612
BssT1I	CCWWGG	2 cut(s)	268, 424
Bst4CI	ACNGT	2 cut(s)	26, 640
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	222, 338, 413
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	178, 384, 615
BstMAI	GTCTC	2 cut(s)	17, 584
BstMBI	GATC	3 cut(s)	175, 381, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 230, 293, 616
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	318, 524
BstV2I	GAAGAC	2 cut(s)	486, 534
BstX2I	RGATCY	3 cut(s)	175, 381, 612
BstYI	RGATCY	3 cut(s)	175, 381, 612
BsuRI	GGCC	2 cut(s)	152, 423
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	222, 338, 413
BtsIMutI	CAGTG	3 cut(s)	22, 71, 636
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	83, 367, 647
CviAII	CATG	2 cut(s)	284, 445
CviJI	RGCY	8 cut(s)	152, 296, 320, 402, 423, 515, 632, 695
CviKI_1	RGCY	8 cut(s)	152, 296, 320, 402, 423, 515, 632, 695
CviQI	GTAC	3 cut(s)	83, 367, 647
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	3 cut(s)	177, 383, 614
DpnII	GATC	3 cut(s)	175, 381, 612
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	687
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	268, 424
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	296
EcoT14I	CCWWGG	2 cut(s)	268, 424
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	268, 424
FaeI	CATG	2 cut(s)	287, 448
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 368, 400
FatI	CATG	2 cut(s)	283, 444
FauI	CCCGC	2 cut(s)	560, 624
FauNDI	CATATG	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	2 cut(s)	307, 513
FokI	GGATG	3 cut(s)	229, 345, 420
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	307, 513
FspBI	CTAG	2 cut(s)	303, 696
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	307, 513
HaeIII	GGCC	2 cut(s)	152, 423
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	287, 448
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	10, 98, 651
Hpy166II	GTNNAC	2 cut(s)	647, 688
Hpy188I	TCNGA	2 cut(s)	475, 561
Hpy188III	TCNNGA	2 cut(s)	330, 445
Hpy8I	GTNNAC	2 cut(s)	647, 688
HpyCH4III	ACNGT	2 cut(s)	26, 640
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	6 cut(s)	173, 280, 434, 512, 679, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 230, 293, 616
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	287, 448
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	175, 381, 612
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	293, 392, 459
LpnPI	CCDG	5 cut(s)	61, 315, 501, 633, 676
Lsp1109I	GCAGC	2 cut(s)	318, 524
MaeI	CTAG	2 cut(s)	303, 696
MaeII	ACGT	1 cut(s)	365
MalI	GATC	3 cut(s)	177, 383, 614
MboI	GATC	3 cut(s)	175, 381, 612
MboII	GAAGA	4 cut(s)	290, 488, 491, 534
MflI	RGATCY	3 cut(s)	175, 381, 612
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	5 cut(s)	155, 357, 429, 436, 501
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	126, 507
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	198, 375, 440, 504
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	423
Mva1269I	GAATGC	2 cut(s)	82, 681
MwoI	GCNNNNNNNGC	4 cut(s)	116, 230, 293, 616
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	3 cut(s)	175, 381, 612
NlaIII	CATG	2 cut(s)	287, 448
NlaIV	GGNNCC	2 cut(s)	225, 266
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	303
PctI	GAATGC	2 cut(s)	82, 681
PfeI	GAWTC	2 cut(s)	98, 651
PkrI	GCNGC	2 cut(s)	308, 514
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	225, 266
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	3 cut(s)	175, 381, 612
RsaI	GTAC	3 cut(s)	84, 368, 648
RsaNI	GTAC	3 cut(s)	83, 367, 647
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	198, 375, 440, 504
SatI	GCNGC	2 cut(s)	307, 513
Sau3AI	GATC	3 cut(s)	175, 381, 612
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	7 cut(s)	298, 322, 329, 368, 490, 499, 517
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	5 cut(s)	155, 357, 429, 436, 501
SsiI	CCGC	4 cut(s)	457, 553, 617, 672
SspMI	CTAG	2 cut(s)	303, 696
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	268, 424
TaaI	ACNGT	2 cut(s)	26, 640
TaiI	ACGT	1 cut(s)	368
TasI	AATT	5 cut(s)	155, 357, 429, 436, 501
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	98, 651
Tru1I	TTAA	4 cut(s)	198, 375, 440, 504
Tru9I	TTAA	4 cut(s)	198, 375, 440, 504
TscAI	CASTG	3 cut(s)	29, 78, 643
TseI	GCWGC	2 cut(s)	306, 512
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	3 cut(s)	29, 78, 643
XapI	RAATTY	2 cut(s)	155, 436
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	2 cut(s)	303, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.