FvH4_6g12860

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009890
Physical Location & Seq
Reverse (-)
7794453 .. 7796833
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12860.t1

Sequence Viewer

Length: 1350 bp
ATGTCTGGTTGTTCTTCAAGTTTTGGAGTATCGACTGTTGTTTCCAGGCGGAACGAGGTGGTTTTGAGGAAGATTTGTAGTCAGAATTTGGGTTTAGATAGTGTTAGGTTTAGGAGTATGGCAAAGGAGGTAGCTTTACCGACCTTTTGTGGGAATAGAAGCTTTAGAAATGGGCTGAATTTGATTTCGGTGAAGAAAGAGTGGAATAATTTGGTCATGAGTATGTTAGAGCCTCGGGGTGGAAGGCAATTCAGCTTGGGTGCAGTCACAGTTTCGAATGAGGGAGGTGGTACTGCTCTAGGGAAGGATGCTAGGATTTTGGAGAATGAGGGCGGTTCAAAGCCTGATTATGATGGTAATGGGGTTGTGCTTGATGGTAGTGGTGGTAATGGGAAGCATCCTAATGGAAGAGGAGGAGATGGAGGAGGCGGAGGAGGTGGTGGCGGTGGTAATGATGATGGGGAAGACGGAGATGAAGAAGAGTTTGGGCCAATTCTGAAATTTGAAGAAGTTATGAAAGAGACTGAGGCTCGAGGGGCTAGTCTTCCCCTTGATATGTTAGAGGCTGCCAAGAATGTGGGAATTCGCAAAGTGCTTCTCCTTAGATATCTGGATTTGCAGGGGTCAGCCTGGCCTCTTGGCTTTGCAATGAAGTCATGCTCTATGCTTCGAGATCGTATGCTAGCTGACCCATCTTTTCTTTTCAAAATTGGAACAGAGATAGTCATTGATTCTTGTTGCGCTACATTTGCTGAAGTTCAAAAGAGGGGAAAAGATTTTTGGGCCGAATTTGAGTTGTACGTTGCAGACCTTTTGGTTGGGGTAGTGGTTAATGTTGCTTTGGTTGGAATGTTGGCACCCTATGCTCGTATTGGGCAACCATCCCTATCAAAAGGGTTCCTTGGACGCATGCAACATGCTTATGGAGCTCTTCCTAGCAGTGTGTTTGAAGCTGAAAGATCAGGATTTGGATATTCTGTAAAACAGAGAATTGCAACTTATTTTTTCAAGGGGATCTTATATGGGGCAGTTGGTTTCGGATGTGGTATTATTGGCCAAGGAATTGCAAACTTAATTATGACTGCTAAGCGGAGCATTAAGAAATCAGAAGAAGACATACCAGTGCCACCTCTAATCAAGAGTGCAGCTCTTTGGGGTGTTTTCCTTGCCGTCTCTTCAAACACCCGCTATCAGATAATCAATGGACTTGAACGCTTGGTAGAGACATCGCCTTTGGCAAAGCAGATCCCACCTGTGGCATTGGCTTTCACTGTTGGTGTACGATTTGCCAACAACGTGTATGGTGGAATGCAGTTCGTAGACTGGGCTAGATGGAGTGGGGTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

450

Amino Acids

48.04

Weight (kDa)

8.56

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 225 - 403 2.4e-64 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 1320
AciI CCGC 6 cut(s) 49, 333, 429, 444, 1090, 1186
AclWI GGATC 2 cut(s) 1022, 1240
AcoI YGGCCR 1 cut(s) 1054
AcsI RAATTY 5 cut(s) 85, 178, 500, 582, 788
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 3 cut(s) 292, 800, 1281
AfiI CCNNNNNNNGG 3 cut(s) 150, 239, 1255
AflIII ACRYGT 1 cut(s) 1296
AgsI TTSAA 9 cut(s) 18, 339, 506, 706, 761, 950, 1009, 1179, 1211
AjnI CCWGG 2 cut(s) 44, 629
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 763, 795
AluBI AGCT 7 cut(s) 134, 162, 255, 686, 929, 953, 1148
AluI AGCT 7 cut(s) 134, 162, 255, 686, 929, 953, 1148
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 3 cut(s) 515, 1177, 1217
AlwI GGATC 2 cut(s) 1022, 1240
Ama87I CYCGRG 2 cut(s) 234, 531
AoxI GGCC 4 cut(s) 488, 632, 783, 1054
ApeKI GCWGC 2 cut(s) 566, 1145
ApoI RAATTY 5 cut(s) 85, 178, 500, 582, 788
ArsI GACNNNNNNTTYG 2 cut(s) 1216, 1248
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 488, 783
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 2 cut(s) 234, 531
BalI TGGCCA 1 cut(s) 1056
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 931
BarI GAAGNNNNNNTAC 2 cut(s) 1101, 1133
BbsI GAAGAC 3 cut(s) 471, 536, 1119
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 2 cut(s) 553, 1157
BccI CCATC 7 cut(s) 347, 368, 413, 452, 700, 889, 1326
BceAI ACGGC 1 cut(s) 1154
BciT130I CCWGG 2 cut(s) 46, 631
BcoDI GTCTC 3 cut(s) 515, 1177, 1217
BfaI CTAG 6 cut(s) 299, 312, 540, 683, 936, 1329
BisI GCNGC 2 cut(s) 567, 1146
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 2 cut(s) 568, 1147
Bme1390I CCNGG 2 cut(s) 46, 631
BmeT110I CYCGRG 2 cut(s) 234, 531
BmgT120I GGNCC 2 cut(s) 488, 783
BmiI GGNNCC 2 cut(s) 858, 899
BmrFI CCNGG 2 cut(s) 46, 631
BmrI ACTGGG 1 cut(s) 1333
BmsI GCATC 2 cut(s) 298, 406
BmtI GCTAGC 1 cut(s) 686
BmuI ACTGGG 1 cut(s) 1333
BpiI GAAGAC 3 cut(s) 471, 536, 1119
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
Bpu1102I GCTNAGC 1 cut(s) 1086
Bpu14I TTCGAA 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 233, 901, 1057
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 239, 1255
Bse1I ACTGG 2 cut(s) 1121, 1328
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 2 cut(s) 46, 631
BseDI CCNNGG 3 cut(s) 233, 901, 1057
BseGI GGATG 4 cut(s) 313, 397, 881, 1046
BseLI CCNNNNNNNGG 3 cut(s) 150, 239, 1255
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 2 cut(s) 1121, 1328
BseRI GAGGAG 4 cut(s) 426, 429, 438, 447
BseXI GCAGC 2 cut(s) 553, 1157
BsgI GTGCAG 2 cut(s) 282, 1164
BshFI GGCC 4 cut(s) 490, 634, 785, 1056
BshNI GGYRCC 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 931
BsiHKCI CYCGRG 2 cut(s) 234, 531
BslI CCNNNNNNNGG 3 cut(s) 150, 239, 1255
BsmAI GTCTC 3 cut(s) 515, 1177, 1217
BsmBI CGTCTC 1 cut(s) 1177
BsmI GAATGC 1 cut(s) 1314
BsnI GGCC 4 cut(s) 490, 634, 785, 1056
BsoBI CYCGRG 2 cut(s) 234, 531
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 931
Bsp143I GATC 4 cut(s) 673, 959, 1014, 1245
Bsp1720I GCTNAGC 1 cut(s) 1086
BspACI CCGC 6 cut(s) 49, 333, 429, 444, 1090, 1186
BspANI GGCC 4 cut(s) 490, 634, 785, 1056
BspCNI CTCAG 1 cut(s) 517
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 858, 899
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 2 cut(s) 1022, 1240
BspQI GCTCTTC 1 cut(s) 936
BspT104I TTCGAA 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 2 cut(s) 1121, 1328
BssECI CCNNGG 3 cut(s) 233, 901, 1057
BssMI GATC 4 cut(s) 673, 959, 1014, 1245
BssT1I CCWWGG 2 cut(s) 901, 1057
Bst2UI CCWGG 2 cut(s) 46, 631
Bst4CI ACNGT 3 cut(s) 37, 271, 1273
Bst6I CTCTTC 4 cut(s) 403, 474, 936, 1180
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 684, 911
BstDEI CTNAG 3 cut(s) 525, 602, 1086
BstF5I GGATG 4 cut(s) 313, 397, 881, 1046
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 4 cut(s) 676, 962, 1017, 1248
BstMAI GTCTC 3 cut(s) 515, 1177, 1217
BstMBI GATC 4 cut(s) 673, 959, 1014, 1245
BstMWI GCNNNNNNNGC 4 cut(s) 536, 749, 863, 926
BstNI CCWGG 2 cut(s) 46, 631
BstNSI RCATGY 2 cut(s) 913, 920
BstSCI CCNGG 2 cut(s) 44, 629
BstV1I GCAGC 2 cut(s) 553, 1157
BstV2I GAAGAC 3 cut(s) 471, 536, 1119
BstX2I RGATCY 2 cut(s) 1014, 1245
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 2 cut(s) 1014, 1245
BsuRI GGCC 4 cut(s) 490, 634, 785, 1056
BtgZI GCGATG 1 cut(s) 1212
BtsCI GGATG 4 cut(s) 313, 397, 881, 1046
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 3 cut(s) 946, 1128, 1269
Cac8I GCNNGC 2 cut(s) 684, 911
CciI TCATGA 1 cut(s) 216
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 488, 783
CseI GACGC 1 cut(s) 915
Csp6I GTAC 3 cut(s) 291, 799, 1280
CviAII CATG 4 cut(s) 217, 657, 910, 917
CviQI GTAC 3 cut(s) 291, 799, 1280
DdeI CTNAG 3 cut(s) 525, 602, 1086
DpnI GATC 4 cut(s) 675, 961, 1016, 1247
DpnII GATC 4 cut(s) 673, 959, 1014, 1245
EaeI YGGCCR 1 cut(s) 1054
Eam1104I CTCTTC 4 cut(s) 403, 474, 936, 1180
EarI CTCTTC 4 cut(s) 403, 474, 936, 1180
EciI GGCGGA 2 cut(s) 64, 444
Ecl136II GAGCTC 1 cut(s) 929
Eco130I CCWWGG 2 cut(s) 901, 1057
Eco24I GRGCYC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 608
Eco53kI GAGCTC 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 234, 531
EcoICRI GAGCTC 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 44, 629
EcoRV GATATC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 901, 1057
EcoT38I GRGCYC 1 cut(s) 931
ErhI CCWWGG 2 cut(s) 901, 1057
Esp3I CGTCTC 1 cut(s) 1177
FaeI CATG 4 cut(s) 220, 660, 913, 920
FalI AAGNNNNNCTT 4 cut(s) 885, 917, 1001, 1033
FatI CATG 4 cut(s) 216, 656, 909, 916
FauI CCCGC 1 cut(s) 1193
FblI GTMKAC 1 cut(s) 1320
Fnu4HI GCNGC 2 cut(s) 567, 1146
FokI GGATG 4 cut(s) 320, 384, 868, 1053
FriOI GRGCYC 1 cut(s) 931
Fsp4HI GCNGC 2 cut(s) 567, 1146
FspBI CTAG 6 cut(s) 299, 312, 540, 683, 936, 1329
GlaI GCGC 1 cut(s) 742
GluI GCNGC 2 cut(s) 567, 1146
HaeIII GGCC 4 cut(s) 490, 634, 785, 1056
HgaI GACGC 1 cut(s) 915
HhaI GCGC 1 cut(s) 743
Hin1II CATG 4 cut(s) 220, 660, 913, 920
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 1 cut(s) 731
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 1280, 1321
Hpy188I TCNGA 5 cut(s) 84, 498, 1040, 1108, 1194
Hpy188III TCNNGA 5 cut(s) 217, 611, 671, 963, 1138
Hpy8I GTNNAC 2 cut(s) 1280, 1321
HpyAV CCTTC 2 cut(s) 237, 298
HpyCH4III ACNGT 3 cut(s) 37, 271, 1273
HpyCH4IV ACGT 2 cut(s) 801, 1296
HpyF10VI GCNNNNNNNGC 4 cut(s) 536, 749, 863, 926
HpyF3I CTNAG 3 cut(s) 525, 602, 1086
HpySE526I ACGT 2 cut(s) 801, 1296
Hsp92II CATG 4 cut(s) 220, 660, 913, 920
HspAI GCGC 1 cut(s) 741
Kzo9I GATC 4 cut(s) 673, 959, 1014, 1245
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 2 cut(s) 926, 1092
Lsp1109I GCAGC 2 cut(s) 553, 1157
LweI GCATC 2 cut(s) 298, 406
MaeI CTAG 6 cut(s) 299, 312, 540, 683, 936, 1329
MaeII ACGT 2 cut(s) 801, 1296
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 675, 961, 1016, 1247
MboI GATC 4 cut(s) 673, 959, 1014, 1245
MflI RGATCY 2 cut(s) 1014, 1245
MhlI GDGCHC 1 cut(s) 931
MlsI TGGCCA 1 cut(s) 1056
MluNI TGGCCA 1 cut(s) 1056
MmeI TCCRAC 1 cut(s) 826
Mox20I TGGCCA 1 cut(s) 1056
MscI TGGCCA 1 cut(s) 1056
MseI TTAA 3 cut(s) 831, 1073, 1098
MslI CAYNNNNRTG 4 cut(s) 221, 402, 921, 1121
Msp20I TGGCCA 1 cut(s) 1056
MspR9I CCNGG 2 cut(s) 46, 631
Mva1269I GAATGC 1 cut(s) 1314
MvaI CCWGG 2 cut(s) 46, 631
MwoI GCNNNNNNNGC 4 cut(s) 536, 749, 863, 926
NdeII GATC 4 cut(s) 673, 959, 1014, 1245
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 4 cut(s) 220, 660, 913, 920
NlaIV GGNNCC 2 cut(s) 858, 899
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 2 cut(s) 913, 920
NspV TTCGAA 1 cut(s) 275
PaeI GCATGC 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 531
PagI TCATGA 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 936
PctI GAATGC 1 cut(s) 1314
PfeI GAWTC 1 cut(s) 731
PkrI GCNGC 2 cut(s) 568, 1147
Psp124BI GAGCTC 1 cut(s) 931
Psp6I CCWGG 2 cut(s) 44, 629
PspGI CCWGG 2 cut(s) 44, 629
PspN4I GGNNCC 2 cut(s) 858, 899
PspPI GGNCC 2 cut(s) 488, 783
PspXI VCTCGAGB 1 cut(s) 531
PsuI RGATCY 2 cut(s) 1014, 1245
RsaI GTAC 3 cut(s) 292, 800, 1281
RsaNI GTAC 3 cut(s) 291, 799, 1280
RseI CAYNNNNRTG 4 cut(s) 221, 402, 921, 1121
SacI GAGCTC 1 cut(s) 931
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 3 cut(s) 831, 1073, 1098
SatI GCNGC 2 cut(s) 567, 1146
Sau3AI GATC 4 cut(s) 673, 959, 1014, 1245
Sau96I GGNCC 2 cut(s) 488, 783
ScrFI CCNGG 2 cut(s) 46, 631
SduI GDGCHC 1 cut(s) 931
SfaNI GCATC 2 cut(s) 298, 406
Sfr274I CTCGAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 531
SmiMI CAYNNNNRTG 4 cut(s) 221, 402, 921, 1121
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SphI GCATGC 1 cut(s) 913
SsiI CCGC 6 cut(s) 49, 333, 429, 444, 1090, 1186
SspMI CTAG 6 cut(s) 299, 312, 540, 683, 936, 1329
SstI GAGCTC 1 cut(s) 931
StyD4I CCNGG 2 cut(s) 44, 629
StyI CCWWGG 2 cut(s) 901, 1057
TaaI ACNGT 3 cut(s) 37, 271, 1273
TaiI ACGT 2 cut(s) 804, 1299
TaqI TCGA 4 cut(s) 32, 275, 532, 670
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 3 cut(s) 831, 1073, 1098
Tru9I TTAA 3 cut(s) 831, 1073, 1098
TscAI CASTG 3 cut(s) 946, 1128, 1276
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 566, 1145
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 489, 530, 665
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 946, 1128, 1276
XapI RAATTY 5 cut(s) 85, 178, 500, 582, 788
XceI RCATGY 2 cut(s) 913, 920
XhoI CTCGAG 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 1320
XspI CTAG 6 cut(s) 299, 312, 540, 683, 936, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.