Rh3BG137400

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009890
Physical Location & Seq
Reverse (-)
11654322 .. 11656684
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG137400.1

Sequence Viewer

Length: 1350 bp
ATGGCGGGTTGTTCTTCAAGCTTTGGAGTATCGAATGTTGTTACCAGGTCGAACGAGGTGGTTTTGAGGAAGATGTGGAGTCAGAGTTTAGTTTTCGATAGCGTTAGGTTTAGGGGTATTGCAATGGAGGTAGCTTTGCCAATGTTTTGTGGGAATAGTAGCTTTGGAAATGGGCTGAATTCGTTTTCGGTGAAGAAAGAGTGGAACTTTGTGGTCATGAGTGTGTTACAGCCTCGGCGTGAAAGGCAATTCAGCTTAGGTGCAGTAACGGTTTCAAATGAGGGAGGTGGTGCTGCTGTAGGAAAGGATACTAGGATTTTGGAGAATGAAGGTGGTTCAAAAATTGATAATGATGGTAATGACGGGGTTGTGCTTGATGGTAGTGGTGGTAATGGGAAGTATCCTAATGGAAAAGGAGGCGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTAATGATGATGGGGAAGACGGAGAAGAAGAAGAGTTTGGGCCAATTCTGAAATTTGAAGAAGTTATGAAAGAGACAGAGGCACGAGGAGCTAGTCTTCCCCTTGATATGTTAGAGGCTGCCAAGAATGTGGGAATTCGCAAAGTTCTTCTACATAGATATCTGGATTTGCAGGGGTCAGCCTGGCCTCTTGGCTTTGCAATGAAGTCATGCTCTATGCTTCGAGATCGTATGCTAGCTGACCCATCCTTTCTTTTCAAAATTGGAACAGAGATTGTTATTGATTCTTGTTGCGCTACATTTGCTGAAGTTCAAAAGAGGGGAAAAGATTTTTGGGCCGAATTTGAGTTGTATGTTGCAGATCTTTTGGTTGGGGTAGTGGTTAATGTTGCTTTGGTTGGGATGTTGGCACCCTATGCTCGTATTGGGCAACCATCACTATCAAAAGGGTTCCTTGGACATATGCAACATGCTTACGGAGCTCTTCCTAGCAGCGTGTTTGAAGCTGAAAGGTCAGGATGTAGATATTCTGTAAAACAGAGAATTGCCACGTACTTTTTTAAGGGGATCTTATATGGAGCAGTAGGCTTTGGATGTGGTATTATTGGCCAAGGAATTGCAAACTTAATCATGACTGCTAAGCGGAGCATAAAGAAATCAGAAGAAGACATACCTGTGCCACCTCTAATTAAGAGTGCAGCTCTTTGGGGTGTTTTCCTTGCCGTGTCTTCAAACACCCGCTATCAGATAATCAATGGACTTGAACGCTTGGTAGAGACATCGCCTTTGGCAAAGCAGATCCCGCCTGTGGCATTGGCTTTCACTGTTGGTGTACGATTCGCCAACAATGTGTATGGCGGAATGCAGTTCGTAGACTGGGCTAGATGGAGTGGGGTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

449

Amino Acids

48.14

Weight (kDa)

7.53

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 225 - 403 2.4e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 1320
AciI CCGC 6 cut(s) 5, 420, 1090, 1186, 1250, 1305
AclWI GGATC 2 cut(s) 1022, 1240
AcoI YGGCCR 1 cut(s) 1054
AcsI RAATTY 4 cut(s) 178, 500, 582, 788
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 1001, 1281
AfiI CCNNNNNNNGG 1 cut(s) 1255
AgsI TTSAA 9 cut(s) 18, 276, 339, 506, 706, 761, 950, 1179, 1211
AjnI CCWGG 2 cut(s) 44, 629
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 763, 795
AluBI AGCT 9 cut(s) 21, 134, 162, 255, 539, 686, 929, 953, 1148
AluI AGCT 9 cut(s) 21, 134, 162, 255, 539, 686, 929, 953, 1148
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 2 cut(s) 515, 1217
AlwI GGATC 2 cut(s) 1022, 1240
AoxI GGCC 4 cut(s) 488, 632, 783, 1054
ApeKI GCWGC 4 cut(s) 293, 566, 939, 1145
ApoI RAATTY 4 cut(s) 178, 500, 582, 788
ArsI GACNNNNNNTTYG 2 cut(s) 1216, 1248
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 488, 783
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 1056
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 931
BarI GAAGNNNNNNTAC 2 cut(s) 1101, 1133
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 4 cut(s) 471, 536, 1119, 1167
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 4 cut(s) 280, 553, 951, 1157
BccI CCATC 6 cut(s) 347, 371, 452, 700, 889, 1326
BceAI ACGGC 1 cut(s) 1154
BciT130I CCWGG 2 cut(s) 46, 631
BciVI GTATCC 2 cut(s) 301, 411
BcoDI GTCTC 2 cut(s) 515, 1217
BfaI CTAG 5 cut(s) 312, 540, 683, 936, 1329
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 2 cut(s) 301, 411
BglII AGATCT 1 cut(s) 808
BisI GCNGC 4 cut(s) 294, 567, 940, 1146
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 4 cut(s) 295, 568, 941, 1147
Bme1390I CCNGG 2 cut(s) 46, 631
BmgT120I GGNCC 2 cut(s) 488, 783
BmiI GGNNCC 2 cut(s) 858, 899
BmrFI CCNGG 2 cut(s) 46, 631
BmrI ACTGGG 1 cut(s) 1333
BmtI GCTAGC 1 cut(s) 686
BmuI ACTGGG 1 cut(s) 1333
BpiI GAAGAC 4 cut(s) 471, 536, 1119, 1167
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
Bpu10I CCTNAGC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 1086
BsaAI YACGTR 1 cut(s) 999
BsaJI CCNNGG 3 cut(s) 233, 901, 1057
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 1255
Bse1I ACTGG 1 cut(s) 1328
Bse3DI GCAATG 2 cut(s) 129, 654
BseBI CCWGG 2 cut(s) 46, 631
BseDI CCNNGG 3 cut(s) 233, 901, 1057
BseGI GGATG 4 cut(s) 692, 855, 971, 1046
BseLI CCNNNNNNNGG 1 cut(s) 1255
BseMI GCAATG 2 cut(s) 129, 654
BseNI ACTGG 1 cut(s) 1328
BseRI GAGGAG 3 cut(s) 438, 441, 549
BseXI GCAGC 4 cut(s) 280, 553, 951, 1157
BsgI GTGCAG 2 cut(s) 282, 1164
BshFI GGCC 4 cut(s) 490, 634, 785, 1056
BshNI GGYRCC 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 931
BslI CCNNNNNNNGG 1 cut(s) 1255
BsmAI GTCTC 2 cut(s) 515, 1217
BsmI GAATGC 1 cut(s) 1314
BsnI GGCC 4 cut(s) 490, 634, 785, 1056
Bsp1286I GDGCHC 1 cut(s) 931
Bsp143I GATC 4 cut(s) 673, 808, 1014, 1245
Bsp1720I GCTNAGC 1 cut(s) 1086
BspACI CCGC 6 cut(s) 5, 420, 1090, 1186, 1250, 1305
BspANI GGCC 4 cut(s) 490, 634, 785, 1056
BspHI TCATGA 2 cut(s) 216, 1077
BspLI GGNNCC 2 cut(s) 858, 899
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 2 cut(s) 1022, 1240
BspQI GCTCTTC 1 cut(s) 936
BspT107I GGYRCC 1 cut(s) 856
BsrDI GCAATG 2 cut(s) 129, 654
BsrI ACTGG 1 cut(s) 1328
BssECI CCNNGG 3 cut(s) 233, 901, 1057
BssMI GATC 4 cut(s) 673, 808, 1014, 1245
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 901, 1057
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 46, 631
Bst4CI ACNGT 2 cut(s) 271, 1273
Bst6I CTCTTC 2 cut(s) 474, 936
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 999
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 2 cut(s) 256, 1086
BstF5I GGATG 4 cut(s) 692, 855, 971, 1046
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 4 cut(s) 676, 811, 1017, 1248
BstMAI GTCTC 2 cut(s) 515, 1217
BstMBI GATC 4 cut(s) 673, 808, 1014, 1245
BstMWI GCNNNNNNNGC 6 cut(s) 244, 536, 749, 863, 926, 1249
BstNI CCWGG 2 cut(s) 46, 631
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 44, 629
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 280, 553, 951, 1157
BstV2I GAAGAC 4 cut(s) 471, 536, 1119, 1167
BstX2I RGATCY 3 cut(s) 808, 1014, 1245
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 3 cut(s) 808, 1014, 1245
BsuI GTATCC 2 cut(s) 301, 411
BsuRI GGCC 4 cut(s) 490, 634, 785, 1056
BtgZI GCGATG 1 cut(s) 1212
BtsCI GGATG 4 cut(s) 692, 855, 971, 1046
BtsIMutI CAGTG 1 cut(s) 1269
Cac8I GCNNGC 1 cut(s) 684
CciI TCATGA 2 cut(s) 216, 1077
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 488, 783
CsiI ACCWGGT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 1000, 1280
CviAII CATG 4 cut(s) 217, 657, 917, 1078
CviQI GTAC 2 cut(s) 1000, 1280
DdeI CTNAG 2 cut(s) 256, 1086
DpnI GATC 4 cut(s) 675, 810, 1016, 1247
DpnII GATC 4 cut(s) 673, 808, 1014, 1245
EaeI YGGCCR 1 cut(s) 1054
Eam1104I CTCTTC 2 cut(s) 474, 936
EarI CTCTTC 2 cut(s) 474, 936
EciI GGCGGA 2 cut(s) 435, 1320
Ecl136II GAGCTC 1 cut(s) 929
Eco130I CCWWGG 2 cut(s) 901, 1057
Eco24I GRGCYC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 608
Eco53kI GAGCTC 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 929
EcoRI GAATTC 2 cut(s) 178, 582
EcoRII CCWGG 2 cut(s) 44, 629
EcoRV GATATC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 901, 1057
EcoT38I GRGCYC 1 cut(s) 931
ErhI CCWWGG 2 cut(s) 901, 1057
FaeI CATG 4 cut(s) 220, 660, 920, 1081
FalI AAGNNNNNCTT 4 cut(s) 885, 917, 1001, 1033
FatI CATG 4 cut(s) 216, 656, 916, 1077
FauI CCCGC 2 cut(s) 1193, 1257
FauNDI CATATG 1 cut(s) 909
FblI GTMKAC 1 cut(s) 1320
Fnu4HI GCNGC 4 cut(s) 294, 567, 940, 1146
FokI GGATG 4 cut(s) 679, 862, 978, 1053
FriOI GRGCYC 1 cut(s) 931
Fsp4HI GCNGC 4 cut(s) 294, 567, 940, 1146
FspBI CTAG 5 cut(s) 312, 540, 683, 936, 1329
GlaI GCGC 1 cut(s) 742
GluI GCNGC 4 cut(s) 294, 567, 940, 1146
HaeIII GGCC 4 cut(s) 490, 634, 785, 1056
HhaI GCGC 1 cut(s) 743
Hin1II CATG 4 cut(s) 220, 660, 920, 1081
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 3 cut(s) 79, 731, 1284
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 1280, 1321
Hpy188I TCNGA 4 cut(s) 84, 498, 1108, 1194
Hpy188III TCNNGA 5 cut(s) 217, 611, 671, 963, 1078
Hpy8I GTNNAC 2 cut(s) 1280, 1321
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 271, 1273
HpyCH4IV ACGT 1 cut(s) 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 244, 536, 749, 863, 926, 1249
HpyF3I CTNAG 2 cut(s) 256, 1086
HpySE526I ACGT 1 cut(s) 998
Hsp92II CATG 4 cut(s) 220, 660, 920, 1081
HspAI GCGC 1 cut(s) 741
Kzo9I GATC 4 cut(s) 673, 808, 1014, 1245
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 4 cut(s) 536, 926, 1025, 1092
Lsp1109I GCAGC 4 cut(s) 280, 553, 951, 1157
MabI ACCWGGT 1 cut(s) 44
MaeI CTAG 5 cut(s) 312, 540, 683, 936, 1329
MaeII ACGT 1 cut(s) 998
MaeIII GTNAC 3 cut(s) 40, 225, 265
MalI GATC 4 cut(s) 675, 810, 1016, 1247
MboI GATC 4 cut(s) 673, 808, 1014, 1245
MflI RGATCY 3 cut(s) 808, 1014, 1245
MhlI GDGCHC 1 cut(s) 931
MlsI TGGCCA 1 cut(s) 1056
MluNI TGGCCA 1 cut(s) 1056
MlyI GAGTC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 1056
MscI TGGCCA 1 cut(s) 1056
MseI TTAA 4 cut(s) 831, 1008, 1073, 1137
MslI CAYNNNNRTG 2 cut(s) 221, 1121
Msp20I TGGCCA 1 cut(s) 1056
MspR9I CCNGG 2 cut(s) 46, 631
Mva1269I GAATGC 1 cut(s) 1314
MvaI CCWGG 2 cut(s) 46, 631
MwoI GCNNNNNNNGC 6 cut(s) 244, 536, 749, 863, 926, 1249
NdeI CATATG 1 cut(s) 909
NdeII GATC 4 cut(s) 673, 808, 1014, 1245
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 4 cut(s) 220, 660, 920, 1081
NlaIV GGNNCC 2 cut(s) 858, 899
NmeAIII GCCGAG 1 cut(s) 214
NspI RCATGY 1 cut(s) 920
PagI TCATGA 2 cut(s) 216, 1077
PciSI GCTCTTC 1 cut(s) 936
PctI GAATGC 1 cut(s) 1314
PfeI GAWTC 2 cut(s) 731, 1284
PkrI GCNGC 4 cut(s) 295, 568, 941, 1147
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Ppu21I YACGTR 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 931
Psp6I CCWGG 2 cut(s) 44, 629
PspGI CCWGG 2 cut(s) 44, 629
PspN4I GGNNCC 2 cut(s) 858, 899
PspPI GGNCC 2 cut(s) 488, 783
PsuI RGATCY 3 cut(s) 808, 1014, 1245
RsaI GTAC 2 cut(s) 1001, 1281
RsaNI GTAC 2 cut(s) 1000, 1280
RseI CAYNNNNRTG 2 cut(s) 221, 1121
SacI GAGCTC 1 cut(s) 931
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 4 cut(s) 831, 1008, 1073, 1137
SatI GCNGC 4 cut(s) 294, 567, 940, 1146
Sau3AI GATC 4 cut(s) 673, 808, 1014, 1245
Sau96I GGNCC 2 cut(s) 488, 783
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 46, 631
SduI GDGCHC 1 cut(s) 931
SexAI ACCWGGT 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 221, 1121
SsiI CCGC 6 cut(s) 5, 420, 1090, 1186, 1250, 1305
SspMI CTAG 5 cut(s) 312, 540, 683, 936, 1329
SstI GAGCTC 1 cut(s) 931
StyD4I CCNGG 2 cut(s) 44, 629
StyI CCWWGG 2 cut(s) 901, 1057
TaaI ACNGT 2 cut(s) 271, 1273
TaiI ACGT 1 cut(s) 1001
TaqI TCGA 4 cut(s) 32, 50, 96, 670
TfiI GAWTC 2 cut(s) 731, 1284
Tru1I TTAA 4 cut(s) 831, 1008, 1073, 1137
Tru9I TTAA 4 cut(s) 831, 1008, 1073, 1137
TscAI CASTG 1 cut(s) 1276
TseI GCWGC 4 cut(s) 293, 566, 939, 1145
TspDTI ATGAA 3 cut(s) 342, 530, 665
TspGWI ACGGA 2 cut(s) 483, 939
TspRI CASTG 1 cut(s) 1276
XapI RAATTY 4 cut(s) 178, 500, 582, 788
XceI RCATGY 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 1320
XspI CTAG 5 cut(s) 312, 540, 683, 936, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.