Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009890

Physical Location & Seq

Genomic Coordinates Forward (+)

25310444 .. 25313665

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCGGGTTGTTCTTCGAGCTTTGGAATATCGAATGTTGTAACCCTGCGGAACGAGGTCGTTTTGAGGAAGATGTGGAGCCAGAATTTGATTTTTGATGGCGTAAGGTTTAGGAATGATGCAAAGGAGGTAGCTTTGCCAGTGTTCTGTAGGAACAATCGCTTTAGACATGGGGTCAATTCCTTTTCGGTGAAGAAAGACCGGAATTTTATGGTCATGAGTATGTCTCAGCCTCAGGCTGAATCACACTCAGAGTTGGGAGCAGTAACGGTTTCAAATGAGGGAGCTGATGTTATTTTAGGAAAGGAAACGAGGATTTTGGAGAACGAGTATAGATCAAAAACCGAGAATGGTGTGCTTGATGGTAGTGGTGGTGATGGGAAATACACGAATGGTAGAGGAGGAGGGGGTGGTGGTGGTGGTGACGATGATGGGGATGATAAAGAAGAAGAAGAGTTTGGGCCACTTATGAAATTTGAAGAGGTTATGAAAGAGACAGAGGCTCGAGGGGCCAGTCTTCCCTCGGATATGATAGAGGCTGCCAAGAGTGTGGGAATTAGAAAAGTGCTTCTCCTTAGATATCTGGATTTGCAGGGGTCAGCCTGGCCTATAGGCTTTTTAATGAAGTCATGCTCTATGCTTCGTGATCGAATGCTAGCCGATCCGTCATTTCTCTTCAAAATTGGAACAGAGATAGTCATTGATTCTTGTTGTGCTACATTTGCGGAAGTTCAAAAGAGGGGCAAAGATTTCTGGGCAGAATTTGAGCTGTATGTTGCAGATCTTTTGGTTGGGGTGGTGGTTAATGTTGCTTTGGTTGGGATGTTGGCACCCTATGCTCGTATTGGGCAACCATCATTATCAAAAGGGTTCCTTGGGCGCTTGCAGCATTCTTATGGAGCTCTCCCTAGCAGTGTATTTGAAGCTGAAAGGCCAGGGTGTAGATATTCTGTGAATCAGAGAATTGCAACTTACTTTTTTAAGGGCATCTTGTATGGCACAGTAGGCTTTGGATGTGGTATCATTGGACAGGGAATTGCAAACTTAATCATGACTGCCAAGCGGAGCGTGAAGAAATCAGAAGAGGACATACCCGTGCCACCTCTAATTAAGAGTGCAGTTCTTTGGGGTGTTTTCCTTGCGCTCTCTTCCAACACCCGATATCAGATCATCAATGGACTTGAACGCTTGGTAGAGGCATCGCCTATGGCAAAGCAGATCCCGCCCATCGCATTGGCTTTCACGGTTGGTGTACGATTTGCCAACAACATCTATGGTGGAATGCAGTTCGTGGACTGGGCTAGATGGAGTGGGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

441

Amino Acids

48.13

Weight (kDa)

8.06

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37860 AT2G37860 AT2G37860 AT2G37860
fragaria_vesca	FvH4_6g12860
malus_domestica	MD04G1137400.v1.1
prunus_persica	Prupe.6G263400_v2.0.a1 Prupe.6G263400_v2.0.a1
pyrus_communis	pycom04g12570
rosa_chinensis	RchiOBHm_Chr3g0464891
rosa_laevigata	RLG00000024667
rosa_multiflora	Rmu_co8018042.1_g000001 Rmu_sc0007114.1_g000002 Rmu_sc0021790.1_g000001 Rmu_sc0026665.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415370
rosa_rugosa	Rorug03G0074500
rosa_samantha	Rh3BG137400 Rh3CG140000 Rh3DG138800
rosa_wichuraiana	Rw3G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	5 cut(s)	5, 49, 725, 1063, 1223
AclWI	GGATC	2 cut(s)	656, 1213
AcsI	RAATTY	4 cut(s)	85, 205, 473, 761
AfaI	GTAC	1 cut(s)	1254
AgsI	TTSAA	7 cut(s)	276, 479, 679, 734, 923, 1184, 1319
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	602, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	6 cut(s)	21, 134, 287, 769, 902, 926
AluI	AGCT	6 cut(s)	21, 134, 287, 769, 902, 926
Alw21I	GWGCWC	1 cut(s)	904
Alw26I	GTCTC	2 cut(s)	231, 488
AlwI	GGATC	2 cut(s)	656, 1213
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	4 cut(s)	461, 510, 605, 932
ApeKI	GCWGC	2 cut(s)	539, 886
ApoI	RAATTY	4 cut(s)	85, 205, 473, 761
AspLEI	GCGC	2 cut(s)	882, 1144
AspS9I	GGNCC	2 cut(s)	461, 510
AsuHPI	GGTGA	3 cut(s)	202, 386, 434
AsuNHI	GCTAGC	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	504
AxyI	CCTNAGG	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	904
BarI	GAAGNNNNNNTAC	2 cut(s)	1074, 1106
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	904
BbvI	GCAGC	2 cut(s)	526, 898
BccI	CCATC	7 cut(s)	92, 356, 371, 425, 862, 1235, 1299
BciT130I	CCWGG	2 cut(s)	604, 936
BcoDI	GTCTC	2 cut(s)	231, 488
BfaI	CTAG	3 cut(s)	656, 909, 1302
BfmI	CTRYAG	2 cut(s)	148, 609
BfoI	RGCGCY	1 cut(s)	883
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	2 cut(s)	540, 887
BlsI	GCNGC	2 cut(s)	541, 888
Bme1390I	CCNGG	2 cut(s)	604, 936
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	461, 510
BmiI	GGNNCC	4 cut(s)	80, 511, 831, 872
BmrFI	CCNGG	2 cut(s)	604, 936
BmrI	ACTGGG	1 cut(s)	1306
BmsI	GCATC	3 cut(s)	109, 996, 1208
BmtI	GCTAGC	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	1306
BpiI	GAAGAC	1 cut(s)	509
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BsaJI	CCNNGG	3 cut(s)	522, 874, 935
BsaWI	WCCGGW	1 cut(s)	201
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 314, 344
Bse1I	ACTGG	3 cut(s)	140, 513, 1301
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	604, 936
BseDI	CCNNGG	3 cut(s)	522, 874, 935
BseGI	GGATG	3 cut(s)	442, 828, 1019
BseMII	CTCAG	3 cut(s)	242, 248, 264
BseNI	ACTGG	3 cut(s)	140, 513, 1301
BseRI	GAGGAG	2 cut(s)	414, 417
BseXI	GCAGC	2 cut(s)	526, 898
BsgI	GTGCAG	1 cut(s)	1137
BshFI	GGCC	4 cut(s)	463, 512, 607, 934
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	904
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	231, 488
BsmI	GAATGC	3 cut(s)	657, 889, 1287
BsnI	GGCC	4 cut(s)	463, 512, 607, 934
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp143I	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
BspACI	CCGC	5 cut(s)	5, 49, 725, 1063, 1223
BspANI	GGCC	4 cut(s)	463, 512, 607, 934
BspCNI	CTCAG	3 cut(s)	241, 247, 263
BspHI	TCATGA	2 cut(s)	216, 1050
BspLI	GGNNCC	4 cut(s)	80, 511, 831, 872
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	2 cut(s)	656, 1213
BspT107I	GGYRCC	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	140, 513, 1301
BssECI	CCNNGG	3 cut(s)	522, 874, 935
BssMI	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
BssT1I	CCWWGG	1 cut(s)	874
Bst2UI	CCWGG	2 cut(s)	604, 936
Bst4CI	ACNGT	3 cut(s)	271, 1003, 1246
Bst6I	CTCTTC	5 cut(s)	447, 474, 680, 1077, 1153
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	657, 884
BstDEI	CTNAG	4 cut(s)	228, 234, 250, 575
BstF5I	GGATG	3 cut(s)	442, 828, 1019
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	2 cut(s)	882, 1144
BstKTI	GATC	6 cut(s)	338, 649, 664, 784, 1170, 1221
BstMAI	GTCTC	2 cut(s)	231, 488
BstMBI	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 722, 836, 886, 1005, 1222
BstNI	CCWGG	2 cut(s)	604, 936
BstSCI	CCNGG	2 cut(s)	602, 934
BstSFI	CTRYAG	2 cut(s)	148, 609
BstV1I	GCAGC	2 cut(s)	526, 898
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	781, 1218
BstXI	CCANNNNNNTGG	2 cut(s)	550, 1234
BstYI	RGATCY	2 cut(s)	781, 1218
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	463, 512, 607, 934
BtgZI	GCGATG	2 cut(s)	1185, 1213
BtsCI	GGATG	3 cut(s)	442, 828, 1019
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	2 cut(s)	147, 919
Cac8I	GCNNGC	2 cut(s)	657, 884
CciI	TCATGA	2 cut(s)	216, 1050
CfoI	GCGC	2 cut(s)	882, 1144
Cfr13I	GGNCC	2 cut(s)	461, 510
Csp6I	GTAC	1 cut(s)	1253
CviAII	CATG	4 cut(s)	170, 217, 630, 1051
CviQI	GTAC	1 cut(s)	1253
DdeI	CTNAG	4 cut(s)	228, 234, 250, 575
DpnI	GATC	6 cut(s)	337, 648, 663, 783, 1169, 1220
DpnII	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	5 cut(s)	447, 474, 680, 1077, 1153
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	5 cut(s)	447, 474, 680, 1077, 1153
Ecl136II	GAGCTC	1 cut(s)	902
Eco130I	CCWWGG	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	904
Eco32I	GATATC	2 cut(s)	581, 1163
Eco53kI	GAGCTC	1 cut(s)	902
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	602, 934
EcoRV	GATATC	2 cut(s)	581, 1163
EcoT14I	CCWWGG	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	4 cut(s)	173, 220, 633, 1054
FalI	AAGNNNNNCTT	4 cut(s)	858, 890, 974, 1006
FatI	CATG	4 cut(s)	169, 216, 629, 1050
FauI	CCCGC	1 cut(s)	1230
Fnu4HI	GCNGC	2 cut(s)	540, 887
FokI	GGATG	3 cut(s)	449, 835, 1026
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	2 cut(s)	540, 887
FspBI	CTAG	3 cut(s)	656, 909, 1302
GlaI	GCGC	2 cut(s)	881, 1143
GluI	GCNGC	2 cut(s)	540, 887
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	4 cut(s)	463, 512, 607, 934
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	2 cut(s)	882, 1144
Hin1II	CATG	4 cut(s)	173, 220, 633, 1054
Hin6I	GCGC	2 cut(s)	880, 1142
HinP1I	GCGC	2 cut(s)	880, 1142
HinfI	GANTC	3 cut(s)	242, 704, 955
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	3 cut(s)	202, 386, 434
Hpy166II	GTNNAC	2 cut(s)	1253, 1294
Hpy188I	TCNGA	5 cut(s)	253, 526, 960, 1081, 1167
Hpy188III	TCNNGA	4 cut(s)	217, 584, 644, 1051
Hpy8I	GTNNAC	2 cut(s)	1253, 1294
HpyCH4III	ACNGT	3 cut(s)	271, 1003, 1246
HpyCH4V	TGCA	8 cut(s)	122, 592, 779, 886, 968, 1040, 1118, 1285
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 722, 836, 886, 1005, 1222
HpyF3I	CTNAG	4 cut(s)	228, 234, 250, 575
Hsp92II	CATG	4 cut(s)	173, 220, 633, 1054
HspAI	GCGC	2 cut(s)	880, 1142
Kzo9I	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
LmnI	GCTCC	5 cut(s)	78, 260, 284, 899, 1065
Lsp1109I	GCAGC	2 cut(s)	526, 898
LweI	GCATC	3 cut(s)	109, 996, 1208
MaeI	CTAG	3 cut(s)	656, 909, 1302
MaeIII	GTNAC	3 cut(s)	40, 265, 422
MalI	GATC	6 cut(s)	337, 648, 663, 783, 1169, 1220
MboI	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
MflI	RGATCY	2 cut(s)	781, 1218
MhlI	GDGCHC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	1176
MseI	TTAA	5 cut(s)	620, 804, 981, 1046, 1110
MslI	CAYNNNNRTG	3 cut(s)	221, 894, 1094
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	604, 936
Mva1269I	GAATGC	3 cut(s)	657, 889, 1287
MvaI	CCWGG	2 cut(s)	604, 936
MwoI	GCNNNNNNNGC	6 cut(s)	509, 722, 836, 886, 1005, 1222
NdeII	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	4 cut(s)	173, 220, 633, 1054
NlaIV	GGNNCC	4 cut(s)	80, 511, 831, 872
NmuCI	GTSAC	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	504
PagI	TCATGA	2 cut(s)	216, 1050
PctI	GAATGC	3 cut(s)	657, 889, 1287
PfeI	GAWTC	3 cut(s)	242, 704, 955
PkrI	GCNGC	2 cut(s)	541, 888
Psp124BI	GAGCTC	1 cut(s)	904
Psp6I	CCWGG	2 cut(s)	602, 934
PspGI	CCWGG	2 cut(s)	602, 934
PspN4I	GGNNCC	4 cut(s)	80, 511, 831, 872
PspPI	GGNCC	2 cut(s)	461, 510
PspXI	VCTCGAGB	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	781, 1218
RsaI	GTAC	1 cut(s)	1254
RsaNI	GTAC	1 cut(s)	1253
RseI	CAYNNNNRTG	3 cut(s)	221, 894, 1094
SacI	GAGCTC	1 cut(s)	904
SaqAI	TTAA	5 cut(s)	620, 804, 981, 1046, 1110
SatI	GCNGC	2 cut(s)	540, 887
Sau3AI	GATC	6 cut(s)	335, 646, 661, 781, 1167, 1218
Sau96I	GGNCC	2 cut(s)	461, 510
ScrFI	CCNGG	2 cut(s)	604, 936
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	3 cut(s)	109, 996, 1208
SfcI	CTRYAG	2 cut(s)	148, 609
Sfr274I	CTCGAG	1 cut(s)	504
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	3 cut(s)	221, 894, 1094
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SsiI	CCGC	5 cut(s)	5, 49, 725, 1063, 1223
SspMI	CTAG	3 cut(s)	656, 909, 1302
SstI	GAGCTC	1 cut(s)	904
StyD4I	CCNGG	2 cut(s)	602, 934
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	3 cut(s)	271, 1003, 1246
TaqI	TCGA	4 cut(s)	17, 32, 505, 649
TfiI	GAWTC	3 cut(s)	242, 704, 955
Tru1I	TTAA	5 cut(s)	620, 804, 981, 1046, 1110
Tru9I	TTAA	5 cut(s)	620, 804, 981, 1046, 1110
TscAI	CASTG	2 cut(s)	147, 919
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	539, 886
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	485, 503, 638
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	147, 919
XapI	RAATTY	4 cut(s)	85, 205, 473, 761
XhoI	CTCGAG	1 cut(s)	504
XspI	CTAG	3 cut(s)	656, 909, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.