Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009890

Physical Location & Seq

Genomic Coordinates Forward (+)

15500981 .. 15503373

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12570.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCGGCTTGTTCTTCGAGCTTTGGGATATCGAATGTTGCAACTTTGCGGAACGAGGTCGTTCGGGGGAAGATGTGGAGCCAGAATTTGATTTCTTATGGACTAAGGTTTAGGAATGATGCAAAGGAGGTTGCTTTTCCAGTGCTCTATAGGAATAGTAGCTTTAGAGATAGGCTGAATTCGTTTTCGGTGAAGAAAGACCGGAAATTTACGGTCATGTCTATGTCCGAGGCTCGGGCTGAATCACAATCCGAGTTAGGCACAATAGCTGTTTCGAATGAGGGAGGGGATGTTATTGTAGAAAAGGAAATGAAGATTTCGGAGAATGAGTGTGGATCAAAAACCGAGAGTGGTGGTAGTGATAAGGATATGATTGATGGTAGTGGTGGTAATGGTAAATATACGAACGGTAGAGGTGGAGGAGGAGGTGGTGGTGGTGGTGACGGTGATGGGGGTGAAAAAGAAGAAGAAGAGTTTGGGCCAATTATGAAATTTGAAGAGATTATGAAAGAGACTGAGGCTCGAGGGGCTAGTCTTCCCTCTGATATGATTGAGGCTGCCAAGAGCGTGGGAATTCGCAAAGTGCTTCTCCTTAGATATCTGGATTTGCAGGGGTCAGCCTGGCCTCTAGGTTTCTTAATGAGGTCATGCTCTATGCTTCGGGATCGAATGCTTGCTGATCCATCATTTCTCTTCAAAATTGGAACGGAGATAGTCATTGATTCTTGTTGTGCTACATTTGCGGAAGTTCAAAAGAGGGGCAAAGATTTCTGGGCAGAATTTGAGCTGTATGTTGCAGATCTTTTAGTTGGGGTGGTGGTTAATGTTGCTTTGGTTGGGATGTTGGCCCCCTATGCTCGTATTGGGAAACCATCATTATCTAAAGGGTTGCTTGGACGCTTGCAACATTCTTATGGAGCTCTTCCTAGCAGTGTATTTGAAGCGGAAAGGCCAGGATGTAGATATTCTGTAAAGCAGAGAATTGCCACTTACTTTTTTAAGGGAATTTTGTATGGAGCAGTAGGCTTTGGATGTGGTATTATAGGCCAAGGAATTGCAAACTTGATCATGACTGCCAAGCGGAGCATAAAGAAGTCAGAAGAGGACATACCTGTTCCACCTCTAATTAAGAGTGCAGCTCTTTGGGGTGTTTTCCTTGCTGTCTCTTCCAACACCCGCTATCAAATCATCAATGGACTTGAACGCTTGGTAGAGGCATCGCCTTTGGCGAAACAGAACCCACTTGTTGCAATGGCTTTCACTGTTGGAGTACGATTTTCAAACAATGTTTATGGGGGAATGCAGTTCGTAGACTGGGCTAGATGGAGTGGGGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

447

Amino Acids

48.41

Weight (kDa)

8.68

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37860 AT2G37860 AT2G37860 AT2G37860
fragaria_vesca	FvH4_6g12860
malus_domestica	MD04G1137400.v1.1
prunus_persica	Prupe.6G263400_v2.0.a1 Prupe.6G263400_v2.0.a1
pyrus_communis	pycom04g12570
rosa_chinensis	RchiOBHm_Chr3g0464891
rosa_laevigata	RLG00000024667
rosa_multiflora	Rmu_co8018042.1_g000001 Rmu_sc0007114.1_g000002 Rmu_sc0021790.1_g000001 Rmu_sc0026665.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415370
rosa_rugosa	Rorug03G0074500
rosa_samantha	Rh3BG137400 Rh3CG140000 Rh3DG138800
rosa_wichuraiana	Rw3G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1311
AciI	CCGC	6 cut(s)	5, 49, 743, 944, 1081, 1177
AclWI	GGATC	3 cut(s)	343, 672, 674
AcsI	RAATTY	7 cut(s)	85, 178, 206, 491, 573, 779, 1005
AfaI	GTAC	1 cut(s)	1272
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	6 cut(s)	497, 697, 752, 941, 1202, 1281
AjnI	CCWGG	2 cut(s)	620, 952
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	6 cut(s)	21, 162, 269, 787, 920, 1139
AluI	AGCT	6 cut(s)	21, 162, 269, 787, 920, 1139
Alw21I	GWGCWC	2 cut(s)	147, 922
Alw26I	GTCTC	2 cut(s)	506, 1168
AlwI	GGATC	3 cut(s)	343, 672, 674
Ama87I	CYCGRG	2 cut(s)	234, 522
AoxI	GGCC	5 cut(s)	479, 623, 846, 950, 1045
ApeKI	GCWGC	2 cut(s)	557, 1136
ApoI	RAATTY	7 cut(s)	85, 178, 206, 491, 573, 779, 1005
AspS9I	GGNCC	2 cut(s)	479, 847
AsuHPI	GGTGA	4 cut(s)	202, 452, 458, 467
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	234, 522
BanII	GRGCYC	1 cut(s)	922
BarI	GAAGNNNNNNTAC	2 cut(s)	1092, 1124
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	147, 922
BbvI	GCAGC	2 cut(s)	544, 1148
BccI	CCATC	5 cut(s)	371, 443, 691, 880, 1317
BciT130I	CCWGG	2 cut(s)	622, 954
BclI	TGATCA	1 cut(s)	1065
BcoDI	GTCTC	2 cut(s)	506, 1168
BfaI	CTAG	4 cut(s)	531, 629, 927, 1320
BfmI	CTRYAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	3 cut(s)	6, 558, 1137
BlsI	GCNGC	3 cut(s)	7, 559, 1138
Bme1390I	CCNGG	2 cut(s)	622, 954
BmeT110I	CYCGRG	2 cut(s)	234, 522
BmgT120I	GGNCC	2 cut(s)	479, 847
BmiI	GGNNCC	2 cut(s)	80, 849
BmrFI	CCNGG	2 cut(s)	622, 954
BmrI	ACTGGG	1 cut(s)	1324
BmsI	GCATC	2 cut(s)	109, 1226
BmuI	ACTGGG	1 cut(s)	1324
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	1123, 1155
Bpu14I	TTCGAA	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	228, 1048
BsaWI	WCCGGW	1 cut(s)	201
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	140, 1319
Bse3DI	GCAATG	1 cut(s)	1257
BseBI	CCWGG	2 cut(s)	622, 954
BseDI	CCNNGG	2 cut(s)	228, 1048
BseGI	GGATG	4 cut(s)	295, 846, 962, 1037
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	1257
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	140, 1319
BseRI	GAGGAG	2 cut(s)	435, 438
BseXI	GCAGC	2 cut(s)	544, 1148
BsgI	GTGCAG	1 cut(s)	1155
BshFI	GGCC	5 cut(s)	481, 625, 848, 952, 1047
BsiHKAI	GWGCWC	2 cut(s)	147, 922
BsiHKCI	CYCGRG	2 cut(s)	234, 522
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	506, 1168
BsmI	GAATGC	2 cut(s)	675, 1305
BsnI	GGCC	5 cut(s)	481, 625, 848, 952, 1047
BsoBI	CYCGRG	2 cut(s)	234, 522
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	147, 922
Bsp143I	GATC	5 cut(s)	335, 664, 679, 799, 1065
BspACI	CCGC	6 cut(s)	5, 49, 743, 944, 1081, 1177
BspANI	GGCC	5 cut(s)	481, 625, 848, 952, 1047
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	1068
BspLI	GGNNCC	2 cut(s)	80, 849
BspPI	GGATC	3 cut(s)	343, 672, 674
BspQI	GCTCTTC	1 cut(s)	927
BspT104I	TTCGAA	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	1257
BsrI	ACTGG	2 cut(s)	140, 1319
BssECI	CCNNGG	2 cut(s)	228, 1048
BssMI	GATC	5 cut(s)	335, 664, 679, 799, 1065
BssT1I	CCWWGG	1 cut(s)	1048
Bst2UI	CCWGG	2 cut(s)	622, 954
Bst4CI	ACNGT	4 cut(s)	214, 410, 446, 1264
Bst6I	CTCTTC	6 cut(s)	465, 492, 698, 927, 1095, 1171
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	675, 902
BstDEI	CTNAG	3 cut(s)	104, 516, 593
BstF5I	GGATG	4 cut(s)	295, 846, 962, 1037
BstKTI	GATC	5 cut(s)	338, 667, 682, 802, 1068
BstMAI	GTCTC	2 cut(s)	506, 1168
BstMBI	GATC	5 cut(s)	335, 664, 679, 799, 1065
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 740, 854
BstNI	CCWGG	2 cut(s)	622, 954
BstSCI	CCNGG	2 cut(s)	620, 952
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	544, 1148
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	5 cut(s)	481, 625, 848, 952, 1047
BtgZI	GCGATG	1 cut(s)	1203
BtsCI	GGATG	4 cut(s)	295, 846, 962, 1037
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	3 cut(s)	147, 937, 1260
Cac8I	GCNNGC	2 cut(s)	675, 902
CciI	TCATGA	1 cut(s)	1068
Cfr13I	GGNCC	2 cut(s)	479, 847
CseI	GACGC	1 cut(s)	906
Csp6I	GTAC	1 cut(s)	1271
CviAII	CATG	3 cut(s)	217, 648, 1069
CviQI	GTAC	1 cut(s)	1271
DdeI	CTNAG	3 cut(s)	104, 516, 593
DpnI	GATC	5 cut(s)	337, 666, 681, 801, 1067
DpnII	GATC	5 cut(s)	335, 664, 679, 799, 1065
Eam1104I	CTCTTC	6 cut(s)	465, 492, 698, 927, 1095, 1171
EarI	CTCTTC	6 cut(s)	465, 492, 698, 927, 1095, 1171
Ecl136II	GAGCTC	1 cut(s)	920
Eco130I	CCWWGG	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	922
Eco32I	GATATC	2 cut(s)	30, 599
Eco53kI	GAGCTC	1 cut(s)	920
Eco88I	CYCGRG	2 cut(s)	234, 522
EcoICRI	GAGCTC	1 cut(s)	920
EcoRI	GAATTC	2 cut(s)	178, 573
EcoRII	CCWGG	2 cut(s)	620, 952
EcoRV	GATATC	2 cut(s)	30, 599
EcoT14I	CCWWGG	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	1048
FaeI	CATG	3 cut(s)	220, 651, 1072
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FatI	CATG	3 cut(s)	216, 647, 1068
FauI	CCCGC	1 cut(s)	1184
FbaI	TGATCA	1 cut(s)	1065
FblI	GTMKAC	1 cut(s)	1311
Fnu4HI	GCNGC	3 cut(s)	6, 558, 1137
FokI	GGATG	4 cut(s)	302, 853, 969, 1044
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	3 cut(s)	6, 558, 1137
FspBI	CTAG	4 cut(s)	531, 629, 927, 1320
GluI	GCNGC	3 cut(s)	6, 558, 1137
HaeIII	GGCC	5 cut(s)	481, 625, 848, 952, 1047
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	906
Hin1II	CATG	3 cut(s)	220, 651, 1072
HinfI	GANTC	2 cut(s)	242, 722
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	4 cut(s)	202, 452, 458, 467
Hpy166II	GTNNAC	1 cut(s)	1312
Hpy188I	TCNGA	5 cut(s)	229, 253, 322, 544, 1099
Hpy188III	TCNNGA	3 cut(s)	602, 662, 1069
Hpy8I	GTNNAC	1 cut(s)	1312
HpyCH4III	ACNGT	4 cut(s)	214, 410, 446, 1264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 740, 854
HpyF3I	CTNAG	3 cut(s)	104, 516, 593
Hsp92II	CATG	3 cut(s)	220, 651, 1072
Ksp22I	TGATCA	1 cut(s)	1065
Kzo9I	GATC	5 cut(s)	335, 664, 679, 799, 1065
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	78, 917, 1016, 1083
Lsp1109I	GCAGC	2 cut(s)	544, 1148
LweI	GCATC	2 cut(s)	109, 1226
MaeI	CTAG	4 cut(s)	531, 629, 927, 1320
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	5 cut(s)	337, 666, 681, 801, 1067
MboI	GATC	5 cut(s)	335, 664, 679, 799, 1065
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	2 cut(s)	147, 922
MmeI	TCCRAC	2 cut(s)	1194, 1246
MseI	TTAA	4 cut(s)	638, 822, 999, 1128
MslI	CAYNNNNRTG	2 cut(s)	221, 912
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	622, 954
Mva1269I	GAATGC	2 cut(s)	675, 1305
MvaI	CCWGG	2 cut(s)	622, 954
MwoI	GCNNNNNNNGC	3 cut(s)	527, 740, 854
NdeII	GATC	5 cut(s)	335, 664, 679, 799, 1065
NlaIII	CATG	3 cut(s)	220, 651, 1072
NlaIV	GGNNCC	2 cut(s)	80, 849
NmuCI	GTSAC	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	1 cut(s)	1226
PctI	GAATGC	2 cut(s)	675, 1305
PfeI	GAWTC	2 cut(s)	242, 722
PkrI	GCNGC	3 cut(s)	7, 559, 1138
Psp124BI	GAGCTC	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	620, 952
PspGI	CCWGG	2 cut(s)	620, 952
PspN4I	GGNNCC	2 cut(s)	80, 849
PspPI	GGNCC	2 cut(s)	479, 847
PspXI	VCTCGAGB	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	1 cut(s)	1272
RsaNI	GTAC	1 cut(s)	1271
RseI	CAYNNNNRTG	2 cut(s)	221, 912
SacI	GAGCTC	1 cut(s)	922
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	638, 822, 999, 1128
SatI	GCNGC	3 cut(s)	6, 558, 1137
Sau3AI	GATC	5 cut(s)	335, 664, 679, 799, 1065
Sau96I	GGNCC	2 cut(s)	479, 847
ScrFI	CCNGG	2 cut(s)	622, 954
SduI	GDGCHC	2 cut(s)	147, 922
SfaNI	GCATC	2 cut(s)	109, 1226
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	221, 912
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
SsiI	CCGC	6 cut(s)	5, 49, 743, 944, 1081, 1177
SspMI	CTAG	4 cut(s)	531, 629, 927, 1320
SstI	GAGCTC	1 cut(s)	922
StyD4I	CCNGG	2 cut(s)	620, 952
StyI	CCWWGG	1 cut(s)	1048
TaaI	ACNGT	4 cut(s)	214, 410, 446, 1264
TaqI	TCGA	5 cut(s)	17, 32, 275, 523, 667
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	242, 722
Tru1I	TTAA	4 cut(s)	638, 822, 999, 1128
Tru9I	TTAA	4 cut(s)	638, 822, 999, 1128
TscAI	CASTG	3 cut(s)	147, 937, 1267
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	557, 1136
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	326, 503, 521
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	3 cut(s)	147, 937, 1267
XapI	RAATTY	7 cut(s)	85, 178, 206, 491, 573, 779, 1005
XhoI	CTCGAG	1 cut(s)	522
XmiI	GTMKAC	1 cut(s)	1311
XspI	CTAG	4 cut(s)	531, 629, 927, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.