Rroxscaffold_6G00415370

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009890
Physical Location & Seq
Forward (+)
37573974 .. 37577185
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415370.1

Sequence Viewer

Length: 1347 bp
ATGGCGGGTTGTTCTTCAAGCTTTGGAGTATCGAATGTTGTAACCAGGTCGAACGAGGTGGTTTTGAGGAAGATGTGGAGTCAGAGTTTAGTTTTCGATAGCGTTAGGTTTAGGGGTATTGCAAAGGAGGTAGCTTTGCCAATGTTTTGTGGGAATAGTAGCTTTGGAAATGGGCTGAATTCGTTTTCGGTGAAGAAAGAGTGGAACTTTGTGGTCATGAGTATGTTACAGCCTCGGCGTGAAAGGCAATTCAGCTTAGGTGCAGTTACGGTTTCAAATGAGGGAGGTGGTGCTGCTGTAGGAAAGGATGCTAGGATTTTGGAGAATGAGGGTGGTTCAAAAATTGATAATGATGGTAATGACGGGGTTGTGCTTGATGGTAGTGGTGGTAATGGGAAGTATCCTAATGGAAAAGGAGGCGGAGGAGGAGGTGGTGGTGGTGGTGGTAATGATGATGGGGAAGATGGAGAAGAAGAAGAGTTTGGGCCAATTCTGAAATTTGAAGAAGTTATGAAAGAGACAGAGGCACGAGGAGCTAGTCTTCCCCTTGATATGTTAGAGGCTGCCAAGAATGTGGGAATTCGCAAAGTTCTTCTACATAGATATCTGGATTTGCAGGGGTCAGCCTGGCCTCTTGGCTTTGCAATGAAGTCATGCTCTATGCTTCGAGATCGTATGCTAGCTGACCCATCCTTTCTTTTCAAAATTGGAACAGAGATTGTCATTGATTCTTGTTGCGCTACATTTGCTGAAGTTCAAAAGAGGGGAAAAGATTTTTGGGCCGAATTTGAGTTGTATGTTGCAGATCTTTTGGTTGGGGTAGTGGTTAATGTTGCTTTGGTTGGGATGTTGGCACCCTATGCTCGTATTGGGCAACCATCACTATCAAAAGGGTTCCTCGGACGTATGCAACATGCTTACGGAGCTCTTCCTAGCAGCGTGTTTGAAGCTGAAAGGTCAGGATGTACATTTTCTGTGAAACAGAGAATTGCCACTTACTTTTTTAAGGGGATCTTATATGGAGCAGTAGGCTTCGGATGTGGTATTATTGGCCAAGGAATTGCAAACTTAATCATGACTGCTAAGCGGAGCATAAAGAAATCAGAAGAAGACATACCTGTGCCACCTCTAATTAAGAGTGCAGCTCTTTGGGGTGTTTTCCTTGCCGTCTCTTCAAACACCCGCTATCAGATAATCAATGGACTTGAACGCTTGGTAGAGACATCGCCTTTGGCAAAGCAGATCCTGCCTGTGGCATTGGCTTTCACAGTTGGTGTACGATTCGCCAACAATGTGTATGGTGGAATGCAGTTCGTAGACTGGGCTAGATGGAGTGGGGTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

448

Amino Acids

48.05

Weight (kDa)

8.06

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 224 - 402 4.5e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 853
AccI GTMKAC 1 cut(s) 1317
AciI CCGC 4 cut(s) 5, 420, 1087, 1183
AclWI GGATC 2 cut(s) 1019, 1237
AcoI YGGCCR 1 cut(s) 1051
AcsI RAATTY 4 cut(s) 178, 497, 579, 785
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 2 cut(s) 967, 1278
AfiI CCNNNNNNNGG 1 cut(s) 1252
AgsI TTSAA 9 cut(s) 18, 276, 339, 503, 703, 758, 947, 1176, 1208
AjnI CCWGG 2 cut(s) 44, 626
AjuI GAANNNNNNNTTGG 4 cut(s) 465, 497, 760, 792
AluBI AGCT 9 cut(s) 21, 134, 162, 255, 536, 683, 926, 950, 1145
AluI AGCT 9 cut(s) 21, 134, 162, 255, 536, 683, 926, 950, 1145
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 3 cut(s) 512, 1174, 1214
AlwI GGATC 2 cut(s) 1019, 1237
AlwNI CAGNNNCTG 1 cut(s) 1246
AoxI GGCC 4 cut(s) 485, 629, 780, 1051
ApeKI GCWGC 4 cut(s) 293, 563, 936, 1142
ApoI RAATTY 4 cut(s) 178, 497, 579, 785
ArsI GACNNNNNNTTYG 2 cut(s) 1213, 1245
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 2 cut(s) 485, 780
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 679
BalI TGGCCA 1 cut(s) 1053
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 928
BarI GAAGNNNNNNTAC 2 cut(s) 1098, 1130
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 2 cut(s) 533, 1116
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 4 cut(s) 280, 550, 948, 1154
BccI CCATC 7 cut(s) 347, 371, 449, 458, 697, 886, 1323
BceAI ACGGC 1 cut(s) 1151
BciT130I CCWGG 2 cut(s) 46, 628
BciVI GTATCC 1 cut(s) 411
BcoDI GTCTC 3 cut(s) 512, 1174, 1214
BfaI CTAG 5 cut(s) 312, 537, 680, 933, 1326
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 1 cut(s) 411
BglII AGATCT 1 cut(s) 805
BisI GCNGC 4 cut(s) 294, 564, 937, 1143
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 4 cut(s) 295, 565, 938, 1144
Bme1390I CCNGG 2 cut(s) 46, 628
BmgT120I GGNCC 2 cut(s) 485, 780
BmiI GGNNCC 2 cut(s) 855, 896
BmrFI CCNGG 2 cut(s) 46, 628
BmrI ACTGGG 1 cut(s) 1330
BmsI GCATC 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 683
BmuI ACTGGG 1 cut(s) 1330
BpiI GAAGAC 2 cut(s) 533, 1116
BplI GAGNNNNNCTC 2 cut(s) 1129, 1161
Bpu10I CCTNAGC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 1083
BsaJI CCNNGG 3 cut(s) 233, 898, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 1252
Bse1I ACTGG 1 cut(s) 1325
Bse3DI GCAATG 1 cut(s) 651
BseBI CCWGG 2 cut(s) 46, 628
BseDI CCNNGG 3 cut(s) 233, 898, 1054
BseGI GGATG 5 cut(s) 313, 689, 852, 968, 1043
BseLI CCNNNNNNNGG 1 cut(s) 1252
BseMI GCAATG 1 cut(s) 651
BseNI ACTGG 1 cut(s) 1325
BseRI GAGGAG 3 cut(s) 438, 441, 546
BseXI GCAGC 4 cut(s) 280, 550, 948, 1154
BsgI GTGCAG 2 cut(s) 282, 1161
BshFI GGCC 4 cut(s) 487, 631, 782, 1053
BshNI GGYRCC 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 928
BslI CCNNNNNNNGG 1 cut(s) 1252
BsmAI GTCTC 3 cut(s) 512, 1174, 1214
BsmBI CGTCTC 1 cut(s) 1174
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 4 cut(s) 487, 631, 782, 1053
Bsp1286I GDGCHC 1 cut(s) 928
Bsp1407I TGTACA 1 cut(s) 965
Bsp143I GATC 4 cut(s) 670, 805, 1011, 1242
Bsp1720I GCTNAGC 1 cut(s) 1083
BspACI CCGC 4 cut(s) 5, 420, 1087, 1183
BspANI GGCC 4 cut(s) 487, 631, 782, 1053
BspHI TCATGA 2 cut(s) 216, 1074
BspLI GGNNCC 2 cut(s) 855, 896
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 2 cut(s) 1019, 1237
BspQI GCTCTTC 1 cut(s) 933
BspT107I GGYRCC 1 cut(s) 853
BsrDI GCAATG 1 cut(s) 651
BsrGI TGTACA 1 cut(s) 965
BsrI ACTGG 1 cut(s) 1325
BssECI CCNNGG 3 cut(s) 233, 898, 1054
BssMI GATC 4 cut(s) 670, 805, 1011, 1242
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 1054
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 46, 628
Bst4CI ACNGT 2 cut(s) 271, 1270
Bst6I CTCTTC 3 cut(s) 471, 933, 1177
BstAPI GCANNNNNTGC 2 cut(s) 860, 1246
BstAUI TGTACA 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 2 cut(s) 256, 1083
BstF5I GGATG 5 cut(s) 313, 689, 852, 968, 1043
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 4 cut(s) 673, 808, 1014, 1245
BstMAI GTCTC 3 cut(s) 512, 1174, 1214
BstMBI GATC 4 cut(s) 670, 805, 1011, 1242
BstMWI GCNNNNNNNGC 6 cut(s) 244, 533, 746, 860, 923, 1246
BstNI CCWGG 2 cut(s) 46, 628
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 44, 626
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 280, 550, 948, 1154
BstV2I GAAGAC 2 cut(s) 533, 1116
BstX2I RGATCY 3 cut(s) 805, 1011, 1242
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 3 cut(s) 805, 1011, 1242
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 4 cut(s) 487, 631, 782, 1053
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 5 cut(s) 313, 689, 852, 968, 1043
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 1246
CciI TCATGA 2 cut(s) 216, 1074
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 2 cut(s) 485, 780
CsiI ACCWGGT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 966, 1277
CviAII CATG 4 cut(s) 217, 654, 914, 1075
CviQI GTAC 2 cut(s) 966, 1277
DdeI CTNAG 2 cut(s) 256, 1083
DpnI GATC 4 cut(s) 672, 807, 1013, 1244
DpnII GATC 4 cut(s) 670, 805, 1011, 1242
EaeI YGGCCR 1 cut(s) 1051
Eam1104I CTCTTC 3 cut(s) 471, 933, 1177
EarI CTCTTC 3 cut(s) 471, 933, 1177
EciI GGCGGA 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 928
Eco32I GATATC 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 771
EcoICRI GAGCTC 1 cut(s) 926
EcoRI GAATTC 2 cut(s) 178, 579
EcoRII CCWGG 2 cut(s) 44, 626
EcoRV GATATC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 1054
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 1054
Esp3I CGTCTC 1 cut(s) 1174
FaeI CATG 4 cut(s) 220, 657, 917, 1078
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FatI CATG 4 cut(s) 216, 653, 913, 1074
FauI CCCGC 1 cut(s) 1190
FblI GTMKAC 1 cut(s) 1317
Fnu4HI GCNGC 4 cut(s) 294, 564, 937, 1143
FokI GGATG 5 cut(s) 320, 676, 859, 975, 1050
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 4 cut(s) 294, 564, 937, 1143
FspBI CTAG 5 cut(s) 312, 537, 680, 933, 1326
GlaI GCGC 1 cut(s) 739
GluI GCNGC 4 cut(s) 294, 564, 937, 1143
HaeIII GGCC 4 cut(s) 487, 631, 782, 1053
HhaI GCGC 1 cut(s) 740
Hin1II CATG 4 cut(s) 220, 657, 917, 1078
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 3 cut(s) 79, 728, 1281
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 1277, 1318
Hpy188I TCNGA 6 cut(s) 84, 495, 902, 1037, 1105, 1191
Hpy188III TCNNGA 5 cut(s) 217, 608, 668, 960, 1075
Hpy8I GTNNAC 2 cut(s) 1277, 1318
HpyCH4III ACNGT 2 cut(s) 271, 1270
HpyCH4IV ACGT 1 cut(s) 904
HpyF10VI GCNNNNNNNGC 6 cut(s) 244, 533, 746, 860, 923, 1246
HpyF3I CTNAG 2 cut(s) 256, 1083
HpySE526I ACGT 1 cut(s) 904
Hsp92II CATG 4 cut(s) 220, 657, 917, 1078
HspAI GCGC 1 cut(s) 738
Kzo9I GATC 4 cut(s) 670, 805, 1011, 1242
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 4 cut(s) 533, 923, 1022, 1089
Lsp1109I GCAGC 4 cut(s) 280, 550, 948, 1154
LweI GCATC 1 cut(s) 298
MabI ACCWGGT 1 cut(s) 44
MaeI CTAG 5 cut(s) 312, 537, 680, 933, 1326
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 3 cut(s) 40, 225, 265
MalI GATC 4 cut(s) 672, 807, 1013, 1244
MboI GATC 4 cut(s) 670, 805, 1011, 1242
MflI RGATCY 3 cut(s) 805, 1011, 1242
MhlI GDGCHC 1 cut(s) 928
MlsI TGGCCA 1 cut(s) 1053
MluNI TGGCCA 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 1053
MscI TGGCCA 1 cut(s) 1053
MseI TTAA 4 cut(s) 828, 1005, 1070, 1134
MslI CAYNNNNRTG 2 cut(s) 221, 1118
Msp20I TGGCCA 1 cut(s) 1053
MspR9I CCNGG 2 cut(s) 46, 628
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 2 cut(s) 46, 628
MwoI GCNNNNNNNGC 6 cut(s) 244, 533, 746, 860, 923, 1246
NdeII GATC 4 cut(s) 670, 805, 1011, 1242
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 4 cut(s) 220, 657, 917, 1078
NlaIV GGNNCC 2 cut(s) 855, 896
NmeAIII GCCGAG 1 cut(s) 214
NspI RCATGY 1 cut(s) 917
PagI TCATGA 2 cut(s) 216, 1074
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 1 cut(s) 1311
PfeI GAWTC 2 cut(s) 728, 1281
PkrI GCNGC 4 cut(s) 295, 565, 938, 1144
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 928
Psp6I CCWGG 2 cut(s) 44, 626
PspGI CCWGG 2 cut(s) 44, 626
PspN4I GGNNCC 2 cut(s) 855, 896
PspPI GGNCC 2 cut(s) 485, 780
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 3 cut(s) 805, 1011, 1242
RsaI GTAC 2 cut(s) 967, 1278
RsaNI GTAC 2 cut(s) 966, 1277
RseI CAYNNNNRTG 2 cut(s) 221, 1118
SacI GAGCTC 1 cut(s) 928
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 4 cut(s) 828, 1005, 1070, 1134
SatI GCNGC 4 cut(s) 294, 564, 937, 1143
Sau3AI GATC 4 cut(s) 670, 805, 1011, 1242
Sau96I GGNCC 2 cut(s) 485, 780
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 46, 628
SduI GDGCHC 1 cut(s) 928
SexAI ACCWGGT 1 cut(s) 44
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 221, 1118
SsiI CCGC 4 cut(s) 5, 420, 1087, 1183
SspMI CTAG 5 cut(s) 312, 537, 680, 933, 1326
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 2 cut(s) 44, 626
StyI CCWWGG 1 cut(s) 1054
TaaI ACNGT 2 cut(s) 271, 1270
TaiI ACGT 1 cut(s) 907
TaqI TCGA 4 cut(s) 32, 50, 96, 667
TatI WGTACW 1 cut(s) 965
TfiI GAWTC 2 cut(s) 728, 1281
Tru1I TTAA 4 cut(s) 828, 1005, 1070, 1134
Tru9I TTAA 4 cut(s) 828, 1005, 1070, 1134
TseI GCWGC 4 cut(s) 293, 563, 936, 1142
TspDTI ATGAA 2 cut(s) 527, 662
TspGWI ACGGA 1 cut(s) 936
XapI RAATTY 4 cut(s) 178, 497, 579, 785
XceI RCATGY 1 cut(s) 917
XmiI GTMKAC 1 cut(s) 1317
XspI CTAG 5 cut(s) 312, 537, 680, 933, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.