Mate efflux family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38330 |
| fragaria_vesca | FvH4_6g10700 FvH4_6g10700 |
| malus_domestica | MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1 |
| prunus_persica | Prupe.6G284300_v2.0.a1 |
| pyrus_communis | pycom04g14730 pycom04g14740 pycom12g16920 |
| rosa_chinensis | RchiOBHm_Chr3g0461701 |
| rosa_laevigata | RLG00000024904 |
| rosa_multiflora | Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00418030 |
| rosa_rugosa | Rorug03G0053100 |
| rosa_samantha | Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200 |
| rosa_wichuraiana | Rw3G009420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 684 |
| Acc36I | ACCTGC | 1 cut(s) | 265 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1436 |
| AccI | GTMKAC | 1 cut(s) | 300 |
| AccII | CGCG | 1 cut(s) | 111 |
| AclI | AACGTT | 1 cut(s) | 1433 |
| AclWI | GGATC | 8 cut(s) | 198, 203, 216, 275, 761, 774, 1306, 1457 |
| AcoI | YGGCCR | 2 cut(s) | 316, 1027 |
| AfaI | GTAC | 2 cut(s) | 750, 923 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 212, 218, 1436, 1452, 1474, 1527 |
| AgeI | ACCGGT | 2 cut(s) | 1306, 1520 |
| AgsI | TTSAA | 7 cut(s) | 370, 391, 504, 706, 868, 1169, 1233 |
| AjnI | CCWGG | 2 cut(s) | 211, 1499 |
| AluBI | AGCT | 8 cut(s) | 269, 275, 341, 385, 692, 986, 1001, 1236 |
| AluI | AGCT | 8 cut(s) | 269, 275, 341, 385, 692, 986, 1001, 1236 |
| Alw21I | GWGCWC | 1 cut(s) | 658 |
| Alw26I | GTCTC | 3 cut(s) | 133, 1066, 1357 |
| Alw44I | GTGCAC | 1 cut(s) | 654 |
| AlwI | GGATC | 8 cut(s) | 198, 203, 216, 275, 761, 774, 1306, 1457 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 362 |
| Ama87I | CYCGRG | 2 cut(s) | 560, 1143 |
| AoxI | GGCC | 4 cut(s) | 316, 543, 1027, 1438 |
| ApaLI | GTGCAC | 1 cut(s) | 654 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 293, 325, 1349, 1381 |
| AsiGI | ACCGGT | 2 cut(s) | 1306, 1520 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 386 |
| AspLEI | GCGC | 2 cut(s) | 553, 685 |
| AspS9I | GGNCC | 3 cut(s) | 1010, 1281, 1523 |
| AsuC2I | CCSGG | 3 cut(s) | 1144, 1145, 1447 |
| AsuHPI | GGTGA | 4 cut(s) | 597, 1063, 1321, 1396 |
| AsuII | TTCGAA | 2 cut(s) | 79, 1221 |
| AvaI | CYCGRG | 2 cut(s) | 560, 1143 |
| AvaII | GGWCC | 3 cut(s) | 1010, 1281, 1523 |
| BaeGI | GKGCMC | 1 cut(s) | 658 |
| BalI | TGGCCA | 2 cut(s) | 318, 1029 |
| BamHI | GGATCC | 2 cut(s) | 208, 766 |
| BanII | GRGCYC | 1 cut(s) | 1341 |
| BbsI | GAAGAC | 1 cut(s) | 1094 |
| Bbv12I | GWGCWC | 1 cut(s) | 658 |
| BccI | CCATC | 4 cut(s) | 45, 571, 1038, 1328 |
| BceAI | ACGGC | 3 cut(s) | 31, 110, 716 |
| BciT130I | CCWGG | 2 cut(s) | 213, 1501 |
| BciVI | GTATCC | 1 cut(s) | 609 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcnI | CCSGG | 3 cut(s) | 1144, 1145, 1447 |
| BcoDI | GTCTC | 3 cut(s) | 133, 1066, 1357 |
| BfaI | CTAG | 1 cut(s) | 1319 |
| BfmI | CTRYAG | 2 cut(s) | 342, 468 |
| BfuAI | ACCTGC | 1 cut(s) | 265 |
| BfuI | GTATCC | 1 cut(s) | 609 |
| Bme1390I | CCNGG | 5 cut(s) | 213, 1144, 1145, 1447, 1501 |
| Bme18I | GGWCC | 3 cut(s) | 1010, 1281, 1523 |
| BmeT110I | CYCGRG | 2 cut(s) | 560, 1143 |
| BmgT120I | GGNCC | 3 cut(s) | 1010, 1281, 1523 |
| BmiI | GGNNCC | 5 cut(s) | 210, 768, 1012, 1282, 1498 |
| BmrFI | CCNGG | 5 cut(s) | 213, 1144, 1145, 1447, 1501 |
| BmsI | GCATC | 1 cut(s) | 1066 |
| BpiI | GAAGAC | 1 cut(s) | 1094 |
| BpmI | CTGGAG | 5 cut(s) | 105, 546, 1515, 1522, 1533 |
| Bpu10I | CCTNAGC | 1 cut(s) | 450 |
| Bpu14I | TTCGAA | 2 cut(s) | 79, 1221 |
| BpuEI | CTTGAG | 1 cut(s) | 1107 |
| BpuMI | CCSGG | 3 cut(s) | 1144, 1145, 1447 |
| Bsa29I | ATCGAT | 1 cut(s) | 40 |
| BsaBI | GATNNNNATC | 2 cut(s) | 195, 1399 |
| BsaJI | CCNNGG | 4 cut(s) | 212, 787, 1143, 1526 |
| BsaWI | WCCGGW | 5 cut(s) | 148, 187, 205, 1306, 1520 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 227, 257, 342, 372 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 212, 218, 1436, 1452, 1474, 1527 |
| Bse118I | RCCGGY | 2 cut(s) | 1306, 1520 |
| Bse1I | ACTGG | 4 cut(s) | 919, 1189, 1195, 1462 |
| Bse3DI | GCAATG | 2 cut(s) | 546, 1086 |
| Bse8I | GATNNNNATC | 2 cut(s) | 195, 1399 |
| BseBI | CCWGG | 2 cut(s) | 213, 1501 |
| BseCI | ATCGAT | 1 cut(s) | 40 |
| BseDI | CCNNGG | 4 cut(s) | 212, 787, 1143, 1526 |
| BseGI | GGATG | 4 cut(s) | 71, 460, 586, 1339 |
| BseJI | GATNNNNATC | 2 cut(s) | 195, 1399 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 212, 218, 1436, 1452, 1474, 1527 |
| BseMI | GCAATG | 2 cut(s) | 546, 1086 |
| BseMII | CTCAG | 2 cut(s) | 155, 649 |
| BseNI | ACTGG | 4 cut(s) | 919, 1189, 1195, 1462 |
| BseRI | GAGGAG | 3 cut(s) | 96, 446, 882 |
| BseSI | GKGCMC | 1 cut(s) | 658 |
| BsgI | GTGCAG | 2 cut(s) | 1077, 1410 |
| Bsh1236I | CGCG | 1 cut(s) | 111 |
| Bsh1285I | CGRYCG | 3 cut(s) | 12, 44, 149 |
| BshFI | GGCC | 4 cut(s) | 318, 545, 1029, 1440 |
| BshTI | ACCGGT | 2 cut(s) | 1306, 1520 |
| BshVI | ATCGAT | 1 cut(s) | 40 |
| BsiEI | CGRYCG | 3 cut(s) | 12, 44, 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 658 |
| BsiHKCI | CYCGRG | 2 cut(s) | 560, 1143 |
| BsiSI | CCGG | 7 cut(s) | 149, 188, 206, 1144, 1307, 1446, 1521 |
| BslFI | GGGAC | 2 cut(s) | 1294, 1525 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 212, 218, 1436, 1452, 1474, 1527 |
| BsmAI | GTCTC | 3 cut(s) | 133, 1066, 1357 |
| BsmBI | CGTCTC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 2 cut(s) | 1294, 1525 |
| BsmI | GAATGC | 1 cut(s) | 1318 |
| BsnI | GGCC | 4 cut(s) | 318, 545, 1029, 1440 |
| BsoBI | CYCGRG | 2 cut(s) | 560, 1143 |
| Bsp119I | TTCGAA | 2 cut(s) | 79, 1221 |
| Bsp1286I | GDGCHC | 2 cut(s) | 658, 1341 |
| Bsp143I | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| Bsp19I | CCATGG | 1 cut(s) | 1526 |
| Bsp68I | TCGCGA | 1 cut(s) | 111 |
| BspANI | GGCC | 4 cut(s) | 318, 545, 1029, 1440 |
| BspCNI | CTCAG | 2 cut(s) | 154, 648 |
| BspDI | ATCGAT | 1 cut(s) | 40 |
| BspFNI | CGCG | 1 cut(s) | 111 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspLI | GGNNCC | 5 cut(s) | 210, 768, 1012, 1282, 1498 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspMI | ACCTGC | 1 cut(s) | 265 |
| BspPI | GGATC | 8 cut(s) | 198, 203, 216, 275, 761, 774, 1306, 1457 |
| BspQI | GCTCTTC | 2 cut(s) | 392, 904 |
| BspT104I | TTCGAA | 2 cut(s) | 79, 1221 |
| BsrDI | GCAATG | 2 cut(s) | 546, 1086 |
| BsrFI | RCCGGY | 2 cut(s) | 1306, 1520 |
| BsrI | ACTGG | 4 cut(s) | 919, 1189, 1195, 1462 |
| BssAI | RCCGGY | 2 cut(s) | 1306, 1520 |
| BssECI | CCNNGG | 4 cut(s) | 212, 787, 1143, 1526 |
| BssMI | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| BssT1I | CCWWGG | 2 cut(s) | 787, 1526 |
| Bst2UI | CCWGG | 2 cut(s) | 213, 1501 |
| Bst4CI | ACNGT | 2 cut(s) | 823, 958 |
| Bst6I | CTCTTC | 4 cut(s) | 392, 904, 1160, 1475 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 257, 446, 680 |
| BstBI | TTCGAA | 2 cut(s) | 79, 1221 |
| BstC8I | GCNNGC | 2 cut(s) | 438, 1027 |
| BstDEI | CTNAG | 3 cut(s) | 141, 450, 635 |
| BstDSI | CCRYGG | 1 cut(s) | 1526 |
| BstF5I | GGATG | 4 cut(s) | 71, 460, 586, 1339 |
| BstFNI | CGCG | 1 cut(s) | 111 |
| BstHHI | GCGC | 2 cut(s) | 553, 685 |
| BstKTI | GATC | 8 cut(s) | 44, 193, 199, 211, 283, 769, 1301, 1452 |
| BstMAI | GTCTC | 3 cut(s) | 133, 1066, 1357 |
| BstMBI | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| BstMCI | CGRYCG | 3 cut(s) | 12, 44, 149 |
| BstNI | CCWGG | 2 cut(s) | 213, 1501 |
| BstSCI | CCNGG | 5 cut(s) | 211, 1142, 1143, 1445, 1499 |
| BstSFI | CTRYAG | 2 cut(s) | 342, 468 |
| BstSLI | GKGCMC | 1 cut(s) | 658 |
| BstUI | CGCG | 1 cut(s) | 111 |
| BstV2I | GAAGAC | 1 cut(s) | 1094 |
| BstX2I | RGATCY | 4 cut(s) | 208, 766, 1298, 1449 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1021 |
| BstYI | RGATCY | 4 cut(s) | 208, 766, 1298, 1449 |
| Bsu15I | ATCGAT | 1 cut(s) | 40 |
| BsuI | GTATCC | 1 cut(s) | 609 |
| BsuRI | GGCC | 4 cut(s) | 318, 545, 1029, 1440 |
| BsuTUI | ATCGAT | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 1526 |
| BtgZI | GCGATG | 1 cut(s) | 126 |
| BtsCI | GGATG | 4 cut(s) | 71, 460, 586, 1339 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| BtuMI | TCGCGA | 1 cut(s) | 111 |
| BveI | ACCTGC | 1 cut(s) | 265 |
| Cac8I | GCNNGC | 2 cut(s) | 438, 1027 |
| CaiI | CAGNNNCTG | 1 cut(s) | 362 |
| CciI | TCATGA | 1 cut(s) | 193 |
| CfoI | GCGC | 2 cut(s) | 553, 685 |
| Cfr10I | RCCGGY | 2 cut(s) | 1306, 1520 |
| Cfr13I | GGNCC | 3 cut(s) | 1010, 1281, 1523 |
| Cfr9I | CCCGGG | 1 cut(s) | 1143 |
| ClaI | ATCGAT | 1 cut(s) | 40 |
| Csp6I | GTAC | 2 cut(s) | 749, 922 |
| CspAI | ACCGGT | 2 cut(s) | 1306, 1520 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 916, 951 |
| CviAII | CATG | 5 cut(s) | 194, 586, 1414, 1474, 1527 |
| CviQI | GTAC | 2 cut(s) | 749, 922 |
| DdeI | CTNAG | 3 cut(s) | 141, 450, 635 |
| DpnI | GATC | 8 cut(s) | 43, 192, 198, 210, 282, 768, 1300, 1451 |
| DpnII | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| DraI | TTTAAA | 1 cut(s) | 1263 |
| EaeI | YGGCCR | 2 cut(s) | 316, 1027 |
| Eam1104I | CTCTTC | 4 cut(s) | 392, 904, 1160, 1475 |
| EarI | CTCTTC | 4 cut(s) | 392, 904, 1160, 1475 |
| Eco130I | CCWWGG | 2 cut(s) | 787, 1526 |
| Eco24I | GRGCYC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 3 cut(s) | 1010, 1281, 1523 |
| Eco88I | CYCGRG | 2 cut(s) | 560, 1143 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1281 |
| EcoRII | CCWGG | 2 cut(s) | 211, 1499 |
| EcoT14I | CCWWGG | 2 cut(s) | 787, 1526 |
| EcoT38I | GRGCYC | 1 cut(s) | 1341 |
| ErhI | CCWWGG | 2 cut(s) | 787, 1526 |
| Esp3I | CGTCTC | 1 cut(s) | 133 |
| FaeI | CATG | 5 cut(s) | 197, 589, 1417, 1477, 1530 |
| FaqI | GGGAC | 2 cut(s) | 1294, 1525 |
| FatI | CATG | 5 cut(s) | 193, 585, 1413, 1473, 1526 |
| FauI | CCCGC | 1 cut(s) | 733 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| FblI | GTMKAC | 1 cut(s) | 300 |
| FokI | GGATG | 4 cut(s) | 58, 467, 593, 1346 |
| FriOI | GRGCYC | 1 cut(s) | 1341 |
| FspBI | CTAG | 1 cut(s) | 1319 |
| FspI | TGCGCA | 1 cut(s) | 684 |
| GlaI | GCGC | 2 cut(s) | 552, 684 |
| GsuI | CTGGAG | 5 cut(s) | 105, 546, 1515, 1522, 1533 |
| HaeIII | GGCC | 4 cut(s) | 318, 545, 1029, 1440 |
| HapII | CCGG | 7 cut(s) | 149, 188, 206, 1144, 1307, 1446, 1521 |
| HhaI | GCGC | 2 cut(s) | 553, 685 |
| Hin1II | CATG | 5 cut(s) | 197, 589, 1417, 1477, 1530 |
| Hin6I | GCGC | 2 cut(s) | 551, 683 |
| HinP1I | GCGC | 2 cut(s) | 551, 683 |
| HincII | GTYRAC | 1 cut(s) | 301 |
| HindII | GTYRAC | 1 cut(s) | 301 |
| HindIII | AAGCTT | 1 cut(s) | 1234 |
| HinfI | GANTC | 8 cut(s) | 116, 163, 464, 602, 1099, 1161, 1250, 1395 |
| HpaII | CCGG | 7 cut(s) | 149, 188, 206, 1144, 1307, 1446, 1521 |
| HphI | GGTGA | 4 cut(s) | 597, 1063, 1321, 1396 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 656 |
| Hpy188I | TCNGA | 9 cut(s) | 171, 568, 638, 832, 1160, 1255, 1357, 1364, 1394 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 194, 574, 775, 1453, 1550 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 656 |
| HpyAV | CCTTC | 4 cut(s) | 31, 319, 504, 1175 |
| HpyCH4III | ACNGT | 2 cut(s) | 823, 958 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 1433 |
| HpyCH4V | TGCA | 9 cut(s) | 251, 263, 344, 539, 656, 674, 845, 1094, 1427 |
| HpyF3I | CTNAG | 3 cut(s) | 141, 450, 635 |
| HpySE526I | ACGT | 2 cut(s) | 52, 1433 |
| Hsp92II | CATG | 5 cut(s) | 197, 589, 1417, 1477, 1530 |
| HspAI | GCGC | 2 cut(s) | 551, 683 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| LguI | GCTCTTC | 2 cut(s) | 392, 904 |
| LmnI | GCTCC | 4 cut(s) | 433, 689, 1496, 1552 |
| LweI | GCATC | 1 cut(s) | 1066 |
| MaeI | CTAG | 1 cut(s) | 1319 |
| MaeII | ACGT | 2 cut(s) | 52, 1433 |
| MaeIII | GTNAC | 2 cut(s) | 48, 409 |
| MalI | GATC | 8 cut(s) | 43, 192, 198, 210, 282, 768, 1300, 1451 |
| MboI | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| MboII | GAAGA | 9 cut(s) | 93, 129, 379, 845, 921, 1094, 1147, 1395, 1462 |
| MfeI | CAATTG | 3 cut(s) | 246, 441, 663 |
| MflI | RGATCY | 4 cut(s) | 208, 766, 1298, 1449 |
| MhlI | GDGCHC | 2 cut(s) | 658, 1341 |
| MlsI | TGGCCA | 2 cut(s) | 318, 1029 |
| MluCI | AATT | 7 cut(s) | 67, 225, 246, 335, 370, 441, 663 |
| MluNI | TGGCCA | 2 cut(s) | 318, 1029 |
| MlyI | GAGTC | 2 cut(s) | 1108, 1170 |
| MmeI | TCCRAC | 1 cut(s) | 1372 |
| Mox20I | TGGCCA | 2 cut(s) | 318, 1029 |
| MroXI | GAANNNNTTC | 1 cut(s) | 386 |
| MscI | TGGCCA | 2 cut(s) | 318, 1029 |
| MseI | TTAA | 2 cut(s) | 753, 1262 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1019, 1418 |
| Msp20I | TGGCCA | 2 cut(s) | 318, 1029 |
| MspI | CCGG | 7 cut(s) | 149, 188, 206, 1144, 1307, 1446, 1521 |
| MspR9I | CCNGG | 5 cut(s) | 213, 1144, 1145, 1447, 1501 |
| MunI | CAATTG | 3 cut(s) | 246, 441, 663 |
| Mva1269I | GAATGC | 1 cut(s) | 1318 |
| MvaI | CCWGG | 2 cut(s) | 213, 1501 |
| MvnI | CGCG | 1 cut(s) | 111 |
| NciI | CCSGG | 3 cut(s) | 1144, 1145, 1447 |
| NcoI | CCATGG | 1 cut(s) | 1526 |
| NdeII | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| NlaIII | CATG | 5 cut(s) | 197, 589, 1417, 1477, 1530 |
| NlaIV | GGNNCC | 5 cut(s) | 210, 768, 1012, 1282, 1498 |
| NmuCI | GTSAC | 2 cut(s) | 48, 409 |
| NruI | TCGCGA | 1 cut(s) | 111 |
| NsbI | TGCGCA | 1 cut(s) | 684 |
| NspV | TTCGAA | 2 cut(s) | 79, 1221 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PciSI | GCTCTTC | 2 cut(s) | 392, 904 |
| PctI | GAATGC | 1 cut(s) | 1318 |
| PdmI | GAANNNNTTC | 1 cut(s) | 386 |
| PfeI | GAWTC | 6 cut(s) | 116, 163, 464, 602, 1250, 1395 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1436 |
| PinAI | ACCGGT | 2 cut(s) | 1306, 1520 |
| Ple19I | CGATCG | 1 cut(s) | 44 |
| PleI | GAGTC | 2 cut(s) | 1107, 1169 |
| PpsI | GAGTC | 2 cut(s) | 1107, 1169 |
| PpuMI | RGGWCCY | 1 cut(s) | 1281 |
| Psp1406I | AACGTT | 1 cut(s) | 1433 |
| Psp5II | RGGWCCY | 1 cut(s) | 1281 |
| Psp6I | CCWGG | 2 cut(s) | 211, 1499 |
| PspGI | CCWGG | 2 cut(s) | 211, 1499 |
| PspN4I | GGNNCC | 5 cut(s) | 210, 768, 1012, 1282, 1498 |
| PspPI | GGNCC | 3 cut(s) | 1010, 1281, 1523 |
| PspPPI | RGGWCCY | 1 cut(s) | 1281 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PstNI | CAGNNNCTG | 1 cut(s) | 362 |
| PsuI | RGATCY | 4 cut(s) | 208, 766, 1298, 1449 |
| PvuI | CGATCG | 1 cut(s) | 44 |
| RruI | TCGCGA | 1 cut(s) | 111 |
| RsaI | GTAC | 2 cut(s) | 750, 923 |
| RsaNI | GTAC | 2 cut(s) | 749, 922 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1019, 1418 |
| SalI | GTCGAC | 1 cut(s) | 299 |
| SapI | GCTCTTC | 2 cut(s) | 392, 904 |
| SaqAI | TTAA | 2 cut(s) | 753, 1262 |
| Sau3AI | GATC | 8 cut(s) | 41, 190, 196, 208, 280, 766, 1298, 1449 |
| Sau96I | GGNCC | 3 cut(s) | 1010, 1281, 1523 |
| SchI | GAGTC | 2 cut(s) | 1108, 1170 |
| ScrFI | CCNGG | 5 cut(s) | 213, 1144, 1145, 1447, 1501 |
| SduI | GDGCHC | 2 cut(s) | 658, 1341 |
| SfaNI | GCATC | 1 cut(s) | 1066 |
| SfcI | CTRYAG | 2 cut(s) | 342, 468 |
| SfuI | TTCGAA | 2 cut(s) | 79, 1221 |
| SinI | GGWCC | 3 cut(s) | 1010, 1281, 1523 |
| SmaI | CCCGGG | 1 cut(s) | 1145 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1019, 1418 |
| SmlI | CTYRAG | 1 cut(s) | 1122 |
| SmoI | CTYRAG | 1 cut(s) | 1122 |
| Sse9I | AATT | 7 cut(s) | 67, 225, 246, 335, 370, 441, 663 |
| SspMI | CTAG | 1 cut(s) | 1319 |
| StyD4I | CCNGG | 5 cut(s) | 211, 1142, 1143, 1445, 1499 |
| StyI | CCWWGG | 2 cut(s) | 787, 1526 |
| TaaI | ACNGT | 2 cut(s) | 823, 958 |
| TaiI | ACGT | 2 cut(s) | 55, 1436 |
| TaqI | TCGA | 7 cut(s) | 40, 79, 300, 380, 643, 697, 1221 |
| TasI | AATT | 7 cut(s) | 67, 225, 246, 335, 370, 441, 663 |
| TatI | WGTACW | 1 cut(s) | 748 |
| TauI | GCSGC | 3 cut(s) | 8, 815, 1373 |
| TfiI | GAWTC | 6 cut(s) | 116, 163, 464, 602, 1250, 1395 |
| Tru1I | TTAA | 2 cut(s) | 753, 1262 |
| Tru9I | TTAA | 2 cut(s) | 753, 1262 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseFI | GTSAC | 2 cut(s) | 48, 409 |
| Tsp45I | GTSAC | 2 cut(s) | 48, 409 |
| TspDTI | ATGAA | 7 cut(s) | 60, 129, 498, 1201, 1387, 1402, 1462 |
| TspGWI | ACGGA | 1 cut(s) | 1262 |
| TspMI | CCCGGG | 1 cut(s) | 1143 |
| TspRI | CASTG | 1 cut(s) | 310 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1436 |
| VneI | GTGCAC | 1 cut(s) | 654 |
| VpaK11BI | GGWCC | 3 cut(s) | 1010, 1281, 1523 |
| XmaI | CCCGGG | 1 cut(s) | 1143 |
| XmiI | GTMKAC | 1 cut(s) | 300 |
| XmnI | GAANNNNTTC | 1 cut(s) | 386 |
| XspI | CTAG | 1 cut(s) | 1319 |