Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012406.1

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Forward (+)

26761 .. 31547

Gene Structure 4787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012406.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggcgagttctctctcgctctcgcaccaattcctatgtacatattcgtcggaaaccaaccaatcatccaagacacaacccctcaccagaaccccaaaacgctccctcgctctccgcaccctcctcaaatccacgtctcccaagaacagctccacttcacttcaaagttcgccggaagagccaaaccccattatcaaaaaacccaaaagggcggccaatcggcccgacccaagtcctccttcccaattgtccttattcaactcacccttgttcattcggcttcgtcgtttaagagatgagagcgtcgagtatgatgggattgttgtggacattttatcaattgcattgcctgctgctttggctctggctgctgaccccattgcttctttgattgatacagcctttgttgggcatttaggatctgtggaactggcagcagttggtgtttcggcttcggtgttcaatttggtttcgaagttgtttaacgttccattgctcaacattaccacgtctttcgttgccgaagagcaggcattagttggcaaggcaaaggatggttctcaacagattggtgatgattgccagggttacaaggaaagcaagaagctcctaccctcggcgtccacttcgttggctcttgcagctagcattggcattgctgaagctgttgctctttttcttggctcgggtgtcttgatggatgccatgggtatatgtgttgccacggcgactcatctgcgcgtctatgctcgtgacacgtacgacaacgctcgctttcttgctggtcacgaagcagccaatcttccccacaaaattcctccacctctccaaattcacactcccaaatccaagagtaaccccatacccaaacacagtaacacaccttggccacctcttctccgccaaggccttctctacatgcctgagatcgtcaaaatggacggtcacgatcccgttgcaggacctctccgtctaaacccacctcacctggccatacgcctactcggacagatccgagaactctttaaagtcgtggactgtcgtcggatccagagcttggtgctcggcggctctgcatgtactcctttccagttggatacttcttcccatatttctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

373

Amino Acids

40.02

Weight (kDa)

9.25

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	969
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AccII	CGCG	1 cut(s)	741
AciI	CCGC	4 cut(s)	115, 212, 901, 1068
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	5 cut(s)	427, 944, 1006, 1042, 1055
AcoI	YGGCCR	3 cut(s)	213, 887, 990
AcsI	RAATTY	2 cut(s)	813, 831
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	3 cut(s)	40, 761, 1081
AfiI	CCNNNNNNNGG	4 cut(s)	408, 616, 959, 1057
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	164, 259, 463
AjiI	CACGTC	2 cut(s)	135, 510
AjnI	CCWGG	2 cut(s)	582, 987
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	5 cut(s)	150, 607, 644, 665, 1056
AluI	AGCT	5 cut(s)	150, 607, 644, 665, 1056
Alw21I	GWGCWC	1 cut(s)	1065
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	5 cut(s)	427, 944, 1006, 1042, 1055
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	5 cut(s)	213, 221, 887, 907, 990
ApeKI	GCWGC	5 cut(s)	353, 368, 434, 641, 794
ApoI	RAATTY	2 cut(s)	813, 831
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	222, 962
AsuHPI	GGTGA	4 cut(s)	76, 255, 584, 977
AsuII	TTCGAA	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	962
BalI	TGGCCA	2 cut(s)	889, 992
BamHI	GGATCC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	1065
BbvI	GCAGC	5 cut(s)	340, 355, 446, 653, 806
BccI	CCATC	3 cut(s)	308, 548, 691
BceAI	ACGGC	1 cut(s)	741
BcgI	CGANNNNNNTGC	4 cut(s)	718, 752, 938, 972
BciT130I	CCWGG	2 cut(s)	584, 989
BciVI	GTATCC	1 cut(s)	1090
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	1090
BisI	GCNGC	7 cut(s)	213, 354, 369, 435, 642, 795, 1069
BlsI	GCNGC	7 cut(s)	214, 355, 370, 436, 643, 796, 1070
Bme1390I	CCNGG	2 cut(s)	584, 989
Bme18I	GGWCC	1 cut(s)	962
BmeT110I	CYCGRG	1 cut(s)	685
BmgBI	CACGTC	2 cut(s)	135, 510
BmgT120I	GGNCC	2 cut(s)	222, 962
BmiI	GGNNCC	1 cut(s)	1049
BmrFI	CCNGG	2 cut(s)	584, 989
BmsI	GCATC	1 cut(s)	691
BmtI	GCTAGC	1 cut(s)	648
BoxI	GACNNNNGTC	2 cut(s)	231, 1041
Bpu14I	TTCGAA	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	620
BsaJI	CCNNGG	6 cut(s)	583, 615, 705, 723, 884, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bsc4I	CCNNNNNNNGG	4 cut(s)	408, 616, 959, 1057
Bse1I	ACTGG	2 cut(s)	435, 1090
Bse3DI	GCAATG	4 cut(s)	344, 378, 491, 654
BseBI	CCWGG	2 cut(s)	584, 989
BseDI	CCNNGG	6 cut(s)	583, 615, 705, 723, 884, 904
BseGI	GGATG	3 cut(s)	65, 559, 706
BseLI	CCNNNNNNNGG	4 cut(s)	408, 616, 959, 1057
BseMI	GCAATG	4 cut(s)	344, 378, 491, 654
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	2 cut(s)	435, 1090
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	5 cut(s)	340, 355, 446, 653, 806
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	5 cut(s)	215, 223, 889, 909, 992
BsiHKAI	GWGCWC	1 cut(s)	1065
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	173
BsiWI	CGTACG	1 cut(s)	759
BslI	CCNNNNNNNGG	4 cut(s)	408, 616, 959, 1057
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsnI	GGCC	5 cut(s)	215, 223, 889, 909, 992
BsoBI	CYCGRG	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	1065
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	419, 927, 949, 1011, 1047
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	4 cut(s)	115, 212, 901, 1068
BspANI	GGCC	5 cut(s)	215, 223, 889, 909, 992
BspCNI	CTCAG	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	1049
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	5 cut(s)	427, 944, 1006, 1042, 1055
BspQI	GCTCTTC	2 cut(s)	171, 519
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	4 cut(s)	344, 378, 491, 654
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	435, 1090
BssECI	CCNNGG	6 cut(s)	583, 615, 705, 723, 884, 904
BssMI	GATC	5 cut(s)	419, 927, 949, 1011, 1047
BssNI	GRCGYC	1 cut(s)	620
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	3 cut(s)	705, 884, 904
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	584, 989
Bst4CI	ACNGT	3 cut(s)	875, 944, 1040
Bst6I	CTCTTC	3 cut(s)	171, 519, 900
BstACI	GRCGYC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	759
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	4 cut(s)	351, 531, 646, 772
BstDEI	CTNAG	1 cut(s)	924
BstDSI	CCRYGG	2 cut(s)	705, 723
BstF5I	GGATG	3 cut(s)	65, 559, 706
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	5 cut(s)	422, 930, 952, 1014, 1050
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	419, 927, 949, 1011, 1047
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
BstNI	CCWGG	2 cut(s)	584, 989
BstNSI	RCATGY	2 cut(s)	922, 1080
BstPAI	GACNNNNGTC	2 cut(s)	231, 1041
BstSCI	CCNGG	2 cut(s)	582, 987
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	5 cut(s)	340, 355, 446, 653, 806
BstX2I	RGATCY	3 cut(s)	419, 1011, 1047
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	3 cut(s)	419, 1011, 1047
BsuI	GTATCC	1 cut(s)	1090
BsuRI	GGCC	5 cut(s)	215, 223, 889, 909, 992
BtgI	CCRYGG	2 cut(s)	705, 723
BtrI	CACGTC	2 cut(s)	135, 510
BtsCI	GGATG	3 cut(s)	65, 559, 706
Cac8I	GCNNGC	4 cut(s)	351, 531, 646, 772
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	2 cut(s)	222, 962
CseI	GACGC	3 cut(s)	292, 609, 730
Csp6I	GTAC	3 cut(s)	39, 760, 1080
CviAII	CATG	4 cut(s)	706, 919, 1077, 1119
CviQI	GTAC	3 cut(s)	39, 760, 1080
DdeI	CTNAG	1 cut(s)	924
DpnI	GATC	5 cut(s)	421, 929, 951, 1013, 1049
DpnII	GATC	5 cut(s)	419, 927, 949, 1011, 1047
DraI	TTTAAA	1 cut(s)	1027
DrdI	GACNNNNNNGTC	1 cut(s)	969
DseDI	GACNNNNNNGTC	1 cut(s)	969
EaeI	YGGCCR	3 cut(s)	213, 887, 990
Eam1104I	CTCTTC	3 cut(s)	171, 519, 900
EarI	CTCTTC	3 cut(s)	171, 519, 900
EciI	GGCGGA	1 cut(s)	890
Eco130I	CCWWGG	3 cut(s)	705, 884, 904
Eco147I	AGGCCT	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	582, 987
EcoT14I	CCWWGG	3 cut(s)	705, 884, 904
ErhI	CCWWGG	3 cut(s)	705, 884, 904
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	4 cut(s)	709, 922, 1080, 1122
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	4 cut(s)	705, 918, 1076, 1118
Fnu4HI	GCNGC	7 cut(s)	213, 354, 369, 435, 642, 795, 1069
FokI	GGATG	3 cut(s)	52, 566, 713
Fsp4HI	GCNGC	7 cut(s)	213, 354, 369, 435, 642, 795, 1069
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	7 cut(s)	213, 354, 369, 435, 642, 795, 1069
HaeIII	GGCC	5 cut(s)	215, 223, 889, 909, 992
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	3 cut(s)	292, 609, 730
HhaI	GCGC	1 cut(s)	741
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	4 cut(s)	709, 922, 1080, 1122
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HinfI	GANTC	1 cut(s)	730
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	4 cut(s)	76, 255, 584, 977
Hpy166II	GTNNAC	3 cut(s)	328, 624, 1036
Hpy188I	TCNGA	4 cut(s)	52, 1007, 1016, 1047
Hpy188III	TCNNGA	5 cut(s)	694, 752, 788, 947, 1051
Hpy8I	GTNNAC	3 cut(s)	328, 624, 1036
Hpy99I	CGWCG	4 cut(s)	52, 288, 308, 1047
HpyAV	CCTTC	2 cut(s)	249, 920
HpyCH4III	ACNGT	3 cut(s)	875, 944, 1040
HpyCH4IV	ACGT	4 cut(s)	134, 486, 509, 758
HpyCH4V	TGCA	4 cut(s)	344, 641, 959, 1076
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
HpyF3I	CTNAG	1 cut(s)	924
HpySE526I	ACGT	4 cut(s)	134, 486, 509, 758
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	4 cut(s)	709, 922, 1080, 1122
HspAI	GCGC	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	419, 927, 949, 1011, 1047
LguI	GCTCTTC	2 cut(s)	171, 519
LmnI	GCTCC	3 cut(s)	107, 155, 612
Lsp1109I	GCAGC	5 cut(s)	340, 355, 446, 653, 806
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	4 cut(s)	134, 486, 509, 758
MaeIII	GTNAC	6 cut(s)	587, 752, 785, 854, 875, 944
MalI	GATC	5 cut(s)	421, 929, 951, 1013, 1049
MboI	GATC	5 cut(s)	419, 927, 949, 1011, 1047
MboII	GAAGA	5 cut(s)	188, 536, 794, 887, 1095
MfeI	CAATTG	2 cut(s)	245, 339
MflI	RGATCY	3 cut(s)	419, 1011, 1047
MhlI	GDGCHC	1 cut(s)	1065
MlsI	TGGCCA	2 cut(s)	889, 992
MluCI	AATT	6 cut(s)	29, 245, 339, 463, 813, 831
MluNI	TGGCCA	2 cut(s)	889, 992
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	3 cut(s)	30, 1025, 1074
Mox20I	TGGCCA	2 cut(s)	889, 992
MscI	TGGCCA	2 cut(s)	889, 992
MseI	TTAA	3 cut(s)	290, 483, 1026
Msp20I	TGGCCA	2 cut(s)	889, 992
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	584, 989
MunI	CAATTG	2 cut(s)	245, 339
MvaI	CCWGG	2 cut(s)	584, 989
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	419, 927, 949, 1011, 1047
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	4 cut(s)	709, 922, 1080, 1122
NlaIV	GGNNCC	1 cut(s)	1049
NmeAIII	GCCGAG	2 cut(s)	596, 1044
NmuCI	GTSAC	3 cut(s)	752, 785, 944
NspI	RCATGY	2 cut(s)	922, 1080
NspV	TTCGAA	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	909
PciSI	GCTCTTC	2 cut(s)	171, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
Pfl23II	CGTACG	1 cut(s)	759
PflMI	CCANNNNNTGG	1 cut(s)	1057
PkrI	GCNGC	7 cut(s)	214, 355, 370, 436, 643, 796, 1070
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
Ppu21I	YACGTR	1 cut(s)	759
PpuMI	RGGWCCY	1 cut(s)	962
PshAI	GACNNNNGTC	2 cut(s)	231, 1041
Psp1406I	AACGTT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	2 cut(s)	582, 987
PspGI	CCWGG	2 cut(s)	582, 987
PspLI	CGTACG	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	1049
PspPI	GGNCC	2 cut(s)	222, 962
PspPPI	RGGWCCY	1 cut(s)	962
PsuI	RGATCY	3 cut(s)	419, 1011, 1047
RsaI	GTAC	3 cut(s)	40, 761, 1081
RsaNI	GTAC	3 cut(s)	39, 760, 1080
SapI	GCTCTTC	2 cut(s)	171, 519
SaqAI	TTAA	3 cut(s)	290, 483, 1026
SatI	GCNGC	7 cut(s)	213, 354, 369, 435, 642, 795, 1069
Sau3AI	GATC	5 cut(s)	419, 927, 949, 1011, 1047
Sau96I	GGNCC	2 cut(s)	222, 962
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	2 cut(s)	584, 989
SduI	GDGCHC	1 cut(s)	1065
SfaNI	GCATC	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	473
SinI	GGWCC	1 cut(s)	962
Sse9I	AATT	6 cut(s)	29, 245, 339, 463, 813, 831
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	4 cut(s)	115, 212, 901, 1068
SspMI	CTAG	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	2 cut(s)	582, 987
StyI	CCWWGG	3 cut(s)	705, 884, 904
TaaI	ACNGT	3 cut(s)	875, 944, 1040
TaiI	ACGT	4 cut(s)	137, 489, 512, 761
TaqI	TCGA	2 cut(s)	306, 473
TasI	AATT	6 cut(s)	29, 245, 339, 463, 813, 831
TatI	WGTACW	2 cut(s)	38, 1079
TauI	GCSGC	2 cut(s)	215, 1071
Tru1I	TTAA	3 cut(s)	290, 483, 1026
Tru9I	TTAA	3 cut(s)	290, 483, 1026
TseFI	GTSAC	3 cut(s)	752, 785, 944
TseI	GCWGC	5 cut(s)	353, 368, 434, 641, 794
Tsp45I	GTSAC	3 cut(s)	752, 785, 944
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	959
Van91I	CCANNNNNTGG	1 cut(s)	1057
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	2 cut(s)	813, 831
XceI	RCATGY	2 cut(s)	922, 1080
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.