Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9006153 .. 9009504

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGCGAGTTCTCTCTCGCTCTCGCACCAATTCCTATGTACATATTCGTCGGAAACCAACCAATCATCCAAGACACAACCCCTCACCAGAACCCCAAAACGCTCCCTCGCTCTCCGCACCCTCCTCAAATCCACGTCTCCCAAGAACAGCTCCACTTCACTTCAAAGTTCGCCGGAAGAGCCAAACCCCATTATCAAAAAACCCAAAAGGGCGGCCAATCGGCCCGACCCAAGTCCTCCTTCCCAATTGTCCTTATTCAACTCACCCTTGTTCATTCGGCTTCGTCGTTTAAGAGATGAGAGCGTCGAGTATGATGGGATTGTTGCGGACATTTTATCAATTGCATTGCCTGCTGCTTTGGCTCTGGCTGCTGACCCCATTGCTTCTTTGATTGATACAGCCTTTGTTGGGCATTTAGGATCTGTGGAACTGGCAGCAGTTGGTGTTTCGGCTTCGGTGTTCAATTTGGTTTCGAAGTTGTTTAACGTTCCATTGCTCAACATTACCACGTCTTTCGTTGCCGAAGAGCAGGCATTAGTTGGCAAGGCAAAGGATGATTGCCAGGGTTACAAGGAAAGCAAGAAGCTCCTACCCTCGGCGTCCACTTCGTTGGCTCTTGCAGCTAGCATTGGCATTGCTGAAGCTGTTGCTCTTTTTCTTGGCTCGGGTGTCTTGATGGATGCCATGGGTATATGTGTTGATTCACCAATGCGAATACCTGCCGAGCAGTTTCTTTCCCTAAGGGCATTTGGTGCTCCACCTATTGTAATTGCACTCGCTGCACAAGGAACATTTCGTGGATTTAAGGACACAAAGACACCTTTGTATGCCATCTGTGCTGGCAATGCACTTAATGCTGTACTGGATGGTATATTGATATTTATTTTTAATCTTGGCATTGGTGGTGCTGCGGTTGCTACTGTGATTTCTGAGTATTTGATTGCTGCTATTCTTTTGTGGAAATTGAATACCCAAATATCACTTATCCCTACTAATATTGATGGAAGAAGAATTGTCCGTTATCTCAAATCTGGGGGTCTTCTTATTGGCAGAACCTTAGCAGTGGTTGTGACTACGACACTAGCCACATCCATGGCAGCTAGGGAGGGCCCTGTACCTATGGCTGGTCATCAGATTTGCATTCAAGTTTGGCTGGCAGTATCGTTGCTTACTGATGCATTAGCTCTTGCTGGTCAGACACTTCTTGCCAGTGGTTATTCCCAAAAGAATTATGAAGAAGCACGCCAAGTGGTTTACAAAGCTCTACAGGTTGCAGCTAGGTTTAGTGATGGGAATTGGTTTGTCTGCATATTATTCATTGGCTTTAAACCGTTTTCTGGCTTATTCAGCACAGACACAGAAGTCCTAGCAATTGCATGTTCTGGTCTATTGTTTGTTGCCGGATCTCAGCCGTTTAACGCTATAGCATTTGTTCTTGATGGGCTGTACTATGGAGTTTCAGACTTTGAATTTGCTGCTTATTCAATGGTGCTGGTAGGACTGACTTCTTCAGTGTTCATACTTTTGGCTGCTCCTGTTTTTGGTCTTGCTGGAATCTGGGCGGGGTTGTTTCTCTTCATGGCATTGCGTGTAATAGCTGGAATTTGGAGGTTAGGTACAAAAAGTGGACCATGGAAACTGGTCTGGGATGAAGGGGAGTTGAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

556

Amino Acids

59.08

Weight (kDa)

8.83

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	117 - 289	1.6e-14	MatE
MatE	PF01554	353 - 498	9.3e-12	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1361
Acc36I	ACCTGC	1 cut(s)	727
AciI	CCGC	5 cut(s)	115, 212, 326, 911, 1562
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	2 cut(s)	427, 1411
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	1469, 1602
AcuI	CTGAAG	2 cut(s)	660, 1494
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	5 cut(s)	40, 861, 1116, 1448, 1618
AfiI	CCNNNNNNNGG	5 cut(s)	408, 595, 1124, 1337, 1541
AgsI	TTSAA	8 cut(s)	164, 259, 463, 967, 1145, 1469, 1485, 1663
AjiI	CACGTC	2 cut(s)	135, 510
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	9 cut(s)	150, 586, 623, 644, 1100, 1184, 1262, 1277, 1598
AluI	AGCT	9 cut(s)	150, 586, 623, 644, 1100, 1184, 1262, 1277, 1598
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	427, 1411
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	3 cut(s)	213, 221, 1108
ApaI	GGGCCC	1 cut(s)	1112
ApoI	RAATTY	2 cut(s)	1469, 1602
ArsI	GACNNNNNNTTYG	2 cut(s)	1454, 1486
AspS9I	GGNCC	4 cut(s)	222, 1108, 1109, 1628
AsuHPI	GGTGA	3 cut(s)	76, 255, 696
AsuII	TTCGAA	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	1628
AxyI	CCTNAGG	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	1112
BanII	GRGCYC	1 cut(s)	1112
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	757
BccI	CCATC	7 cut(s)	308, 670, 839, 860, 995, 1283, 1433
BceAI	ACGGC	1 cut(s)	1396
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	5 cut(s)	624, 1082, 1101, 1278, 1367
BfmI	CTRYAG	2 cut(s)	1265, 1422
BfuAI	ACCTGC	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	1628
BmeT110I	CYCGRG	1 cut(s)	664
BmgBI	CACGTC	2 cut(s)	135, 510
BmgT120I	GGNCC	4 cut(s)	222, 1108, 1109, 1628
BmiI	GGNNCC	1 cut(s)	1110
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	670, 1165
BmtI	GCTAGC	1 cut(s)	627
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	1031
Bpu10I	CCTNAGC	1 cut(s)	1057
Bpu14I	TTCGAA	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	599
BsaJI	CCNNGG	5 cut(s)	562, 594, 684, 1092, 1631
BsaXI	ACNNNNNCTCC	2 cut(s)	1600, 1630
Bsc4I	CCNNNNNNNGG	5 cut(s)	408, 595, 1124, 1337, 1541
Bse1I	ACTGG	4 cut(s)	435, 867, 1209, 1644
Bse21I	CCTNAGG	1 cut(s)	740
Bse3DI	GCAATG	6 cut(s)	344, 378, 491, 633, 850, 1583
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	5 cut(s)	562, 594, 684, 1092, 1631
BseGI	GGATG	6 cut(s)	65, 559, 685, 871, 1088, 1654
BseLI	CCNNNNNNNGG	5 cut(s)	408, 595, 1124, 1337, 1541
BseMI	GCAATG	6 cut(s)	344, 378, 491, 633, 850, 1583
BseMII	CTCAG	2 cut(s)	921, 1421
BseNI	ACTGG	4 cut(s)	435, 867, 1209, 1644
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	1112
BsgI	GTGCAG	1 cut(s)	765
BshFI	GGCC	3 cut(s)	215, 223, 1110
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	173, 1401
BslI	CCNNNNNNNGG	5 cut(s)	408, 595, 1124, 1337, 1541
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	1140
BsnI	GGCC	3 cut(s)	215, 223, 1110
BsoBI	CYCGRG	1 cut(s)	664
Bsp119I	TTCGAA	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	1108
Bsp1286I	GDGCHC	2 cut(s)	757, 1112
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	419, 1403
Bsp19I	CCATGG	3 cut(s)	684, 1092, 1631
BspACI	CCGC	5 cut(s)	115, 212, 326, 911, 1562
BspANI	GGCC	3 cut(s)	215, 223, 1110
BspCNI	CTCAG	2 cut(s)	922, 1420
BspLI	GGNNCC	1 cut(s)	1110
BspMI	ACCTGC	1 cut(s)	727
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	427, 1411
BspQI	GCTCTTC	2 cut(s)	171, 519
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	6 cut(s)	344, 378, 491, 633, 850, 1583
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	4 cut(s)	435, 867, 1209, 1644
BssECI	CCNNGG	5 cut(s)	562, 594, 684, 1092, 1631
BssMI	GATC	2 cut(s)	419, 1403
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	3 cut(s)	684, 1092, 1631
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	922, 1332
Bst6I	CTCTTC	3 cut(s)	171, 519, 1580
BstACI	GRCGYC	1 cut(s)	599
BstAPI	GCANNNNNTGC	4 cut(s)	350, 752, 779, 854
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	6 cut(s)	351, 531, 625, 841, 1155, 1243
BstDEI	CTNAG	4 cut(s)	740, 930, 1057, 1407
BstDSI	CCRYGG	3 cut(s)	684, 1092, 1631
BstF5I	GGATG	6 cut(s)	65, 559, 685, 871, 1088, 1654
BstKTI	GATC	2 cut(s)	422, 1406
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	419, 1403
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	1380
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	2 cut(s)	1265, 1422
BstSLI	GKGCMC	1 cut(s)	1112
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	2 cut(s)	419, 1403
BstXI	CCANNNNNNTGG	2 cut(s)	610, 1093
BstYI	RGATCY	2 cut(s)	419, 1403
Bsu36I	CCTNAGG	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	215, 223, 1110
BtgI	CCRYGG	3 cut(s)	684, 1092, 1631
BtrI	CACGTC	2 cut(s)	135, 510
BtsCI	GGATG	6 cut(s)	65, 559, 685, 871, 1088, 1654
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	1068, 1216, 1518
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	6 cut(s)	351, 531, 625, 841, 1155, 1243
Cfr13I	GGNCC	4 cut(s)	222, 1108, 1109, 1628
CseI	GACGC	2 cut(s)	292, 588
Csp6I	GTAC	5 cut(s)	39, 860, 1115, 1447, 1617
CviAII	CATG	5 cut(s)	685, 1093, 1377, 1579, 1632
CviQI	GTAC	5 cut(s)	39, 860, 1115, 1447, 1617
DdeI	CTNAG	4 cut(s)	740, 930, 1057, 1407
DpnI	GATC	2 cut(s)	421, 1405
DpnII	GATC	2 cut(s)	419, 1403
DraI	TTTAAA	1 cut(s)	1327
DrdI	GACNNNNNNGTC	1 cut(s)	1361
DseDI	GACNNNNNNGTC	1 cut(s)	1361
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	171, 519, 1580
EarI	CTCTTC	3 cut(s)	171, 519, 1580
Eco130I	CCWWGG	3 cut(s)	684, 1092, 1631
Eco24I	GRGCYC	1 cut(s)	1112
Eco47I	GGWCC	1 cut(s)	1628
Eco57I	CTGAAG	2 cut(s)	660, 1494
Eco81I	CCTNAGG	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	664
EcoO109I	RGGNCCY	2 cut(s)	1108, 1109
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	3 cut(s)	684, 1092, 1631
EcoT22I	ATGCAT	1 cut(s)	1180
EcoT38I	GRGCYC	1 cut(s)	1112
ErhI	CCWWGG	3 cut(s)	684, 1092, 1631
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	5 cut(s)	688, 1096, 1380, 1582, 1635
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	5 cut(s)	684, 1092, 1376, 1578, 1631
FauI	CCCGC	1 cut(s)	1555
FokI	GGATG	6 cut(s)	52, 566, 692, 878, 1075, 1661
FriOI	GRGCYC	1 cut(s)	1112
FspBI	CTAG	5 cut(s)	624, 1082, 1101, 1278, 1367
HaeIII	GGCC	3 cut(s)	215, 223, 1110
HapII	CCGG	2 cut(s)	173, 1401
HgaI	GACGC	2 cut(s)	292, 588
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	688, 1096, 1380, 1582, 1635
HinfI	GANTC	2 cut(s)	701, 1554
HpaII	CCGG	2 cut(s)	173, 1401
HphI	GGTGA	3 cut(s)	76, 255, 696
Hpy166II	GTNNAC	3 cut(s)	603, 1255, 1628
Hpy188I	TCNGA	5 cut(s)	52, 931, 1134, 1197, 1462
Hpy188III	TCNNGA	2 cut(s)	673, 1436
Hpy8I	GTNNAC	3 cut(s)	603, 1255, 1628
Hpy99I	CGWCG	3 cut(s)	52, 288, 308
HpyAV	CCTTC	2 cut(s)	249, 1646
HpyCH4III	ACNGT	2 cut(s)	922, 1332
HpyCH4IV	ACGT	3 cut(s)	134, 486, 509
HpyF3I	CTNAG	4 cut(s)	740, 930, 1057, 1407
HpySE526I	ACGT	3 cut(s)	134, 486, 509
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	5 cut(s)	688, 1096, 1380, 1582, 1635
Kzo9I	GATC	2 cut(s)	419, 1403
LguI	GCTCTTC	2 cut(s)	171, 519
LmnI	GCTCC	5 cut(s)	107, 155, 591, 760, 1537
LweI	GCATC	2 cut(s)	670, 1165
MaeI	CTAG	5 cut(s)	624, 1082, 1101, 1278, 1367
MaeII	ACGT	3 cut(s)	134, 486, 509
MaeIII	GTNAC	2 cut(s)	566, 1069
MalI	GATC	2 cut(s)	421, 1405
MboI	GATC	2 cut(s)	419, 1403
MboII	GAAGA	8 cut(s)	188, 536, 1017, 1020, 1031, 1247, 1500, 1567
MfeI	CAATTG	3 cut(s)	245, 339, 1371
MflI	RGATCY	2 cut(s)	419, 1403
MhlI	GDGCHC	2 cut(s)	757, 1112
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	8 cut(s)	92, 116, 131, 134, 246, 604, 1099, 1602
Mph1103I	ATGCAT	1 cut(s)	1180
MseI	TTAA	7 cut(s)	290, 483, 804, 852, 888, 1326, 1416
MslI	CAYNNNNRTG	1 cut(s)	1091
MspI	CCGG	2 cut(s)	173, 1401
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	3 cut(s)	245, 339, 1371
Mva1269I	GAATGC	1 cut(s)	1140
MvaI	CCWGG	1 cut(s)	563
NcoI	CCATGG	3 cut(s)	684, 1092, 1631
NdeII	GATC	2 cut(s)	419, 1403
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	5 cut(s)	688, 1096, 1380, 1582, 1635
NlaIV	GGNNCC	1 cut(s)	1110
NmeAIII	GCCGAG	2 cut(s)	575, 748
NmuCI	GTSAC	1 cut(s)	1069
NsiI	ATGCAT	1 cut(s)	1180
NspI	RCATGY	1 cut(s)	1380
NspV	TTCGAA	1 cut(s)	473
PciSI	GCTCTTC	2 cut(s)	171, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	1140
PfeI	GAWTC	2 cut(s)	701, 1554
PshAI	GACNNNNGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	1110
PspOMI	GGGCCC	1 cut(s)	1108
PspPI	GGNCC	4 cut(s)	222, 1108, 1109, 1628
PsuI	RGATCY	2 cut(s)	419, 1403
RsaI	GTAC	5 cut(s)	40, 861, 1116, 1448, 1618
RsaNI	GTAC	5 cut(s)	39, 860, 1115, 1447, 1617
RseI	CAYNNNNRTG	1 cut(s)	1091
SapI	GCTCTTC	2 cut(s)	171, 519
SaqAI	TTAA	7 cut(s)	290, 483, 804, 852, 888, 1326, 1416
Sau3AI	GATC	2 cut(s)	419, 1403
Sau96I	GGNCC	4 cut(s)	222, 1108, 1109, 1628
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	2 cut(s)	757, 1112
SfaNI	GCATC	2 cut(s)	670, 1165
SfcI	CTRYAG	2 cut(s)	1265, 1422
SfuI	TTCGAA	1 cut(s)	473
SinI	GGWCC	1 cut(s)	1628
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SsiI	CCGC	5 cut(s)	115, 212, 326, 911, 1562
SspI	AATATT	1 cut(s)	997
SspMI	CTAG	5 cut(s)	624, 1082, 1101, 1278, 1367
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	3 cut(s)	684, 1092, 1631
TaaI	ACNGT	2 cut(s)	922, 1332
TaiI	ACGT	3 cut(s)	137, 489, 512
TaqI	TCGA	2 cut(s)	306, 473
TatI	WGTACW	3 cut(s)	38, 859, 1446
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	701, 1554
Tru1I	TTAA	7 cut(s)	290, 483, 804, 852, 888, 1326, 1416
Tru9I	TTAA	7 cut(s)	290, 483, 804, 852, 888, 1326, 1416
TscAI	CASTG	3 cut(s)	1068, 1216, 1518
TseFI	GTSAC	1 cut(s)	1069
Tsp45I	GTSAC	1 cut(s)	1069
TspDTI	ATGAA	6 cut(s)	262, 1248, 1306, 1507, 1567, 1665
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	3 cut(s)	1068, 1216, 1518
VpaK11BI	GGWCC	1 cut(s)	1628
XapI	RAATTY	2 cut(s)	1469, 1602
XceI	RCATGY	1 cut(s)	1380
XspI	CTAG	5 cut(s)	624, 1082, 1101, 1278, 1367
Zsp2I	ATGCAT	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.