Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Forward (+)

17556985 .. 17559148

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14740.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATGAATGCCATGGGTATATATGCTGATTCACCAATGCGAATACCTGCCGAGAATTTTCTTGCCCTAAGGGCATTGGGTGCTCCACCAATTGTAATTGCACTTGCCTCACAAGGCACTTTTCGTGGCTTTAAGGACACAAAGACACCTCTGTATGCCATTGTTGCTGGCAACTTACTTAATGCTATATTGGATGCAATTTTGATATTTGCTTTTGATTTTGGAATCCGCGGTGCTGCTATTGCTACAGTGATTTCTGAGTACCTGATTGCTGCTATTCTTCTGTGGAAATTGAATAGCAAAGTATTACTTGTCCCTACCTATATTGATGGGAGAAGAATGATCGGTTACCTTAAATCTGGGGGTCTTCTTATTGGCAGAAGCTTAGCAGTCGTCGTAACTACGACACTAGCCACATCCATGGCAGCCCGGGAAGGTCCTATCCCCATGGCGGGCCATCAGATTTGCATTCAAGTTTGGTTGGCAGTATCTTTGCTTACCGATGCTTTAGCACTTGCTGGTCAGGCACTTCTTGCCAGTGGTTACTCCCAACAAGATTATGAACAAGCACGCCTAGTGATTTATAGGGTTCTACAGATTGGTTTAGTGACGGGAATTGGTTTGGGAATTATATTATTCATCAGTTTTAAAGCGTTTTCTAGCTTATTCAGCACAGACCCACAAGTCCTGGCAATTGCATGGTCTGGTTTATTGTTTGTTGCTGGATCTCAGCCAATAAACGCTATAGCATTTGTTATCGACGGACTGTACTATGGAGTTTCAGACTTTGGATATGCTGCCTATTCAATGGGGTTAGTAGGGCTGATTTCTTCCACAGTCATACTTGTTGCTTCTCCGTCTTTTGGCCTTGCTGGAGTCTGGACGGGGCTGTTTCTCTTCATGGCATTGCGCGTTGTAGCCGGGATTTGGAGGTTGGGCACAAGAACCGGACCGTGGAAATTGGTCTGGGATGAGAGGAAGCAGGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

331

Amino Acids

35.28

Weight (kDa)

9.3

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	55
AccII	CGCG	2 cut(s)	231, 912
AciI	CCGC	3 cut(s)	229, 231, 452
AclWI	GGATC	1 cut(s)	733
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	2 cut(s)	263, 770
AfiI	CCNNNNNNNGG	5 cut(s)	451, 452, 863, 927, 954
AgsI	TTSAA	3 cut(s)	295, 473, 807
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	2 cut(s)	384, 663
AluI	AGCT	2 cut(s)	384, 663
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	454, 865
ApeKI	GCWGC	4 cut(s)	236, 272, 425, 797
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	3 cut(s)	437, 454, 950
AsuC2I	CCSGG	3 cut(s)	430, 431, 922
AsuHPI	GGTGA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	437, 950
AxyI	CCTNAGG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	223, 259, 437, 784
BccI	CCATC	2 cut(s)	323, 465
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	3 cut(s)	430, 431, 922
BfaI	CTAG	3 cut(s)	410, 575, 660
BfmI	CTRYAG	3 cut(s)	246, 593, 744
BfuAI	ACCTGC	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	237, 273, 426, 798
BlpI	GCTNAGC	1 cut(s)	385
BlsI	GCNGC	4 cut(s)	238, 274, 427, 799
Bme1390I	CCNGG	4 cut(s)	430, 431, 689, 922
Bme18I	GGWCC	2 cut(s)	437, 950
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	3 cut(s)	437, 454, 950
BmrFI	CCNGG	4 cut(s)	430, 431, 689, 922
BmsI	GCATC	2 cut(s)	184, 493
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	385
BpuMI	CCSGG	3 cut(s)	430, 431, 922
BsaJI	CCNNGG	6 cut(s)	12, 229, 420, 429, 447, 953
BsaWI	WCCGGW	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	5 cut(s)	451, 452, 863, 927, 954
Bse1I	ACTGG	1 cut(s)	537
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	905
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	6 cut(s)	12, 229, 420, 429, 447, 953
BseGI	GGATG	3 cut(s)	199, 416, 976
BseLI	CCNNNNNNNGG	5 cut(s)	451, 452, 863, 927, 954
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	2 cut(s)	249, 743
BseNI	ACTGG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	4 cut(s)	223, 259, 437, 784
Bsh1236I	CGCG	2 cut(s)	231, 912
BshFI	GGCC	2 cut(s)	456, 867
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	430, 921, 948
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	5 cut(s)	451, 452, 863, 927, 954
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	2 cut(s)	13, 468
BsnI	GGCC	2 cut(s)	456, 867
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	85, 941
Bsp143I	GATC	2 cut(s)	342, 725
Bsp1720I	GCTNAGC	1 cut(s)	385
Bsp19I	CCATGG	3 cut(s)	12, 420, 447
BspACI	CCGC	3 cut(s)	229, 231, 452
BspANI	GGCC	2 cut(s)	456, 867
BspCNI	CTCAG	2 cut(s)	250, 742
BspFNI	CGCG	2 cut(s)	231, 912
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	6 cut(s)	12, 229, 420, 429, 447, 953
BssMI	GATC	2 cut(s)	342, 725
BssT1I	CCWWGG	3 cut(s)	12, 420, 447
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	4 cut(s)	250, 768, 838, 954
Bst6I	CTCTTC	1 cut(s)	902
BstAPI	GCANNNNNTGC	2 cut(s)	80, 533
BstC8I	GCNNGC	3 cut(s)	169, 454, 571
BstDEI	CTNAG	5 cut(s)	68, 258, 385, 729, 990
BstDSI	CCRYGG	5 cut(s)	12, 229, 420, 447, 953
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	199, 416, 976
BstFNI	CGCG	2 cut(s)	231, 912
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	2 cut(s)	345, 728
BstMBI	GATC	2 cut(s)	342, 725
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 80, 164, 242, 524, 533, 669
BstNI	CCWGG	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	428, 429, 687, 920
BstSFI	CTRYAG	3 cut(s)	246, 593, 744
BstSLI	GKGCMC	1 cut(s)	941
BstUI	CGCG	2 cut(s)	231, 912
BstV1I	GCAGC	4 cut(s)	223, 259, 437, 784
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	725
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	456, 867
BtgI	CCRYGG	5 cut(s)	12, 229, 420, 447, 953
BtsCI	GGATG	3 cut(s)	199, 416, 976
BtsIMutI	CAGTG	2 cut(s)	255, 544
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	169, 454, 571
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	3 cut(s)	437, 454, 950
Cfr42I	CCGCGG	1 cut(s)	232
Cfr9I	CCCGGG	1 cut(s)	429
CpoI	CGGWCCG	1 cut(s)	950
Csp6I	GTAC	2 cut(s)	262, 769
CspI	CGGWCCG	1 cut(s)	950
CviAII	CATG	5 cut(s)	13, 421, 448, 699, 901
CviQI	GTAC	2 cut(s)	262, 769
DdeI	CTNAG	5 cut(s)	68, 258, 385, 729, 990
DpnI	GATC	2 cut(s)	344, 727
DpnII	GATC	2 cut(s)	342, 725
DraI	TTTAAA	1 cut(s)	649
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco130I	CCWWGG	3 cut(s)	12, 420, 447
Eco47I	GGWCC	2 cut(s)	437, 950
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	3 cut(s)	12, 420, 447
ErhI	CCWWGG	3 cut(s)	12, 420, 447
FaeI	CATG	5 cut(s)	16, 424, 451, 702, 904
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	5 cut(s)	12, 420, 447, 698, 900
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	237, 273, 426, 798
FokI	GGATG	3 cut(s)	206, 403, 983
Fsp4HI	GCNGC	4 cut(s)	237, 273, 426, 798
FspBI	CTAG	3 cut(s)	410, 575, 660
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	4 cut(s)	237, 273, 426, 798
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	456, 867
HapII	CCGG	3 cut(s)	430, 921, 948
HhaI	GCGC	1 cut(s)	912
Hin1II	CATG	5 cut(s)	16, 424, 451, 702, 904
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	3 cut(s)	29, 225, 876
HpaII	CCGG	3 cut(s)	430, 921, 948
HphI	GGTGA	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	259, 462, 784
Hpy188III	TCNNGA	1 cut(s)	880
Hpy99I	CGWCG	2 cut(s)	398, 764
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	4 cut(s)	250, 768, 838, 954
HpyCH4V	TGCA	4 cut(s)	101, 197, 468, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 80, 164, 242, 524, 533, 669
HpyF3I	CTNAG	5 cut(s)	68, 258, 385, 729, 990
Hsp92II	CATG	5 cut(s)	16, 424, 451, 702, 904
HspAI	GCGC	1 cut(s)	910
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	342, 725
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	223, 259, 437, 784
LweI	GCATC	2 cut(s)	184, 493
MaeI	CTAG	3 cut(s)	410, 575, 660
MaeIII	GTNAC	4 cut(s)	347, 397, 542, 607
MalI	GATC	2 cut(s)	344, 727
MboI	GATC	2 cut(s)	342, 725
MboII	GAAGA	5 cut(s)	272, 348, 359, 822, 889
MfeI	CAATTG	2 cut(s)	90, 693
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	2 cut(s)	85, 941
MluCI	AATT	9 cut(s)	55, 90, 96, 198, 290, 615, 627, 693, 959
MlyI	GAGTC	1 cut(s)	885
MnlI	CCTC	4 cut(s)	118, 159, 924, 969
MseI	TTAA	4 cut(s)	132, 180, 354, 648
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	3 cut(s)	430, 921, 948
MspR9I	CCNGG	4 cut(s)	430, 431, 689, 922
MunI	CAATTG	2 cut(s)	90, 693
Mva1269I	GAATGC	2 cut(s)	13, 468
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	2 cut(s)	231, 912
MwoI	GCNNNNNNNGC	7 cut(s)	71, 80, 164, 242, 524, 533, 669
NciI	CCSGG	3 cut(s)	430, 431, 922
NcoI	CCATGG	3 cut(s)	12, 420, 447
NdeII	GATC	2 cut(s)	342, 725
NlaIII	CATG	5 cut(s)	16, 424, 451, 702, 904
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	607
PctI	GAATGC	2 cut(s)	13, 468
PfeI	GAWTC	2 cut(s)	29, 225
PkrI	GCNGC	4 cut(s)	238, 274, 427, 799
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	687
PspPI	GGNCC	3 cut(s)	437, 454, 950
PspPPI	RGGWCCY	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	725
RsaI	GTAC	2 cut(s)	263, 770
RsaNI	GTAC	2 cut(s)	262, 769
RseI	CAYNNNNRTG	1 cut(s)	419
Rsr2I	CGGWCCG	1 cut(s)	950
RsrII	CGGWCCG	1 cut(s)	950
SacII	CCGCGG	1 cut(s)	232
SaqAI	TTAA	4 cut(s)	132, 180, 354, 648
SatI	GCNGC	4 cut(s)	237, 273, 426, 798
Sau3AI	GATC	2 cut(s)	342, 725
Sau96I	GGNCC	3 cut(s)	437, 454, 950
SchI	GAGTC	1 cut(s)	885
ScrFI	CCNGG	4 cut(s)	430, 431, 689, 922
SduI	GDGCHC	2 cut(s)	85, 941
SetI	ASST	9 cut(s)	49, 151, 267, 323, 354, 386, 439, 665, 935
SfaNI	GCATC	2 cut(s)	184, 493
SfcI	CTRYAG	3 cut(s)	246, 593, 744
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	2 cut(s)	437, 950
SmaI	CCCGGG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	9 cut(s)	55, 90, 96, 198, 290, 615, 627, 693, 959
SsiI	CCGC	3 cut(s)	229, 231, 452
SspMI	CTAG	3 cut(s)	410, 575, 660
StyD4I	CCNGG	4 cut(s)	428, 429, 687, 920
StyI	CCWWGG	3 cut(s)	12, 420, 447
TaaI	ACNGT	4 cut(s)	250, 768, 838, 954
TaqI	TCGA	1 cut(s)	759
TasI	AATT	9 cut(s)	55, 90, 96, 198, 290, 615, 627, 693, 959
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	2 cut(s)	29, 225
Tru1I	TTAA	4 cut(s)	132, 180, 354, 648
Tru9I	TTAA	4 cut(s)	132, 180, 354, 648
TscAI	CASTG	2 cut(s)	255, 544
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	236, 272, 425, 797
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	4 cut(s)	20, 576, 628, 889
TspGWI	ACGGA	2 cut(s)	777, 846
TspMI	CCCGGG	1 cut(s)	429
TspRI	CASTG	2 cut(s)	255, 544
VpaK11BI	GGWCC	2 cut(s)	437, 950
XapI	RAATTY	1 cut(s)	55
XmaI	CCCGGG	1 cut(s)	429
XspI	CTAG	3 cut(s)	410, 575, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.