Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027127.1

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Forward (+)

696 .. 3921

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atggcgagttctctctcgctctcgcaccaattcctatgtacatattcgtcggaaaccaaccaatcatccaagacacaacccctcaccagaaccccaaaacgctccctcgctctccgcaccctcctcaaatccacgtctcccaagaacagctccacttcacttcaaagttcgccggaagagccaaaccccattatcaaaaaacccaaaagggcggccaatcggcccgacccaagtcctccttcccaattgtccttattcaactcacccttgttcattcggcttcgtcgtttaagagatgagagcgtcgagtatgatgggattgttgtggacattttatcaattgcattgcctgctgctttggctctggctgctgaccccattgcttctttgattgatacagcctttgttgggcatttaggatctgtggaactggcagcagttggtgtttcggcttcggtgttcaatttggtttcgaagttgtttaacgttccattgctcaacattaccacgtctttcgttgccgaagagcaggcattagttggcaaggcaaaggatggttctcaacagattggtgatgattgccagggttacaaggaaagcaagaagctcctaccctcggcgtccacttcgttggctcttgcagctagcattggcattgctgaagctgttgctctttttcttggctcgggtgtcttgatggatgccatgggtatatgtgttgattcaccaatgcgaatacctgccgagcagtttctttccctaagggcatttggtgctccacctattgtaattgcactcgctgcacaaggaacatttcgtggatttaaggacacaaagacacctttgtatgccatctgtgctggcaatgcacttaatgctgtactggatggtatattgatatttatttgtaatcttggcattggtggtgctgcggttgctactgtgatttctgagtatttgattgctgctattcttttatggaaattgaatacccaaatatcacttgtccctactaatattgatggaagaagaattgtccgttatctcaaatctgggggtcttcttattggcagaaccttagcagtggttgtaactacgacactagccacatccatggcagctagggagggccctgtacctatggctggtcatcagatttgcattcaagtttggctggcagtatcgttgcttactgatgcattagctcttgctggtcagtttgttgccggatctcagccgtttaacgctatagcatttgttcttgatgggctgtactatggagtttcagactttgaatttgctgcttattcaatggtgctggtaggactgacttcttcagtgttcatacttttggctgctcctgtttttggtcttgctggaatctgggcgggattgtttctcttcatggcattgcgtgtaatagctggaatttggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

479

Amino Acids

50.48

Weight (kDa)

8.82

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	748
AciI	CCGC	4 cut(s)	115, 212, 932, 1388
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	2 cut(s)	427, 1237
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	1295, 1428
AcuI	CTGAAG	2 cut(s)	681, 1320
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	4 cut(s)	40, 882, 1137, 1274
AfiI	CCNNNNNNNGG	4 cut(s)	408, 616, 1145, 1367
AgsI	TTSAA	7 cut(s)	164, 259, 463, 988, 1166, 1295, 1311
AjiI	CACGTC	2 cut(s)	135, 510
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	7 cut(s)	150, 607, 644, 665, 1121, 1205, 1424
AluI	AGCT	7 cut(s)	150, 607, 644, 665, 1121, 1205, 1424
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	427, 1237
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	3 cut(s)	213, 221, 1129
ApaI	GGGCCC	1 cut(s)	1133
ApoI	RAATTY	2 cut(s)	1295, 1428
ArsI	GACNNNNNNTTYG	2 cut(s)	1280, 1312
AspS9I	GGNCC	3 cut(s)	222, 1129, 1130
AsuHPI	GGTGA	4 cut(s)	76, 255, 584, 717
AsuII	TTCGAA	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	685
AxyI	CCTNAGG	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	1133
BanII	GRGCYC	1 cut(s)	1133
BbsI	GAAGAC	1 cut(s)	1052
Bbv12I	GWGCWC	1 cut(s)	778
BccI	CCATC	7 cut(s)	308, 548, 691, 860, 881, 1016, 1259
BceAI	ACGGC	1 cut(s)	1222
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	3 cut(s)	645, 1103, 1122
BfmI	CTRYAG	1 cut(s)	1248
BfuAI	ACCTGC	1 cut(s)	748
Bme1390I	CCNGG	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	685
BmgBI	CACGTC	2 cut(s)	135, 510
BmgT120I	GGNCC	3 cut(s)	222, 1129, 1130
BmiI	GGNNCC	1 cut(s)	1131
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	2 cut(s)	691, 1186
BmtI	GCTAGC	1 cut(s)	648
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	1052
Bpu10I	CCTNAGC	1 cut(s)	1078
Bpu14I	TTCGAA	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	583, 615, 705, 1113
Bsc4I	CCNNNNNNNGG	4 cut(s)	408, 616, 1145, 1367
Bse1I	ACTGG	2 cut(s)	435, 888
Bse21I	CCTNAGG	1 cut(s)	761
Bse3DI	GCAATG	6 cut(s)	344, 378, 491, 654, 871, 1409
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	4 cut(s)	583, 615, 705, 1113
BseGI	GGATG	5 cut(s)	65, 559, 706, 892, 1109
BseLI	CCNNNNNNNGG	4 cut(s)	408, 616, 1145, 1367
BseMI	GCAATG	6 cut(s)	344, 378, 491, 654, 871, 1409
BseMII	CTCAG	2 cut(s)	942, 1247
BseNI	ACTGG	2 cut(s)	435, 888
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	1133
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	215, 223, 1131
BsiHKAI	GWGCWC	1 cut(s)	778
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	173, 1227
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	4 cut(s)	408, 616, 1145, 1367
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	1161
BsnI	GGCC	3 cut(s)	215, 223, 1131
BsoBI	CYCGRG	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	1129
Bsp1286I	GDGCHC	2 cut(s)	778, 1133
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	419, 1229
Bsp19I	CCATGG	2 cut(s)	705, 1113
BspACI	CCGC	4 cut(s)	115, 212, 932, 1388
BspANI	GGCC	3 cut(s)	215, 223, 1131
BspCNI	CTCAG	2 cut(s)	943, 1246
BspLI	GGNNCC	1 cut(s)	1131
BspMI	ACCTGC	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	427, 1237
BspQI	GCTCTTC	2 cut(s)	171, 519
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	6 cut(s)	344, 378, 491, 654, 871, 1409
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	435, 888
BssECI	CCNNGG	4 cut(s)	583, 615, 705, 1113
BssMI	GATC	2 cut(s)	419, 1229
BssNI	GRCGYC	1 cut(s)	620
BssT1I	CCWWGG	2 cut(s)	705, 1113
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	943
Bst6I	CTCTTC	3 cut(s)	171, 519, 1406
BstACI	GRCGYC	1 cut(s)	620
BstAPI	GCANNNNNTGC	4 cut(s)	350, 773, 800, 875
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	5 cut(s)	351, 531, 646, 862, 1176
BstDEI	CTNAG	4 cut(s)	761, 951, 1078, 1233
BstDSI	CCRYGG	2 cut(s)	705, 1113
BstF5I	GGATG	5 cut(s)	65, 559, 706, 892, 1109
BstKTI	GATC	2 cut(s)	422, 1232
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	419, 1229
BstNI	CCWGG	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	1248
BstSLI	GKGCMC	1 cut(s)	1133
BstV2I	GAAGAC	1 cut(s)	1052
BstX2I	RGATCY	2 cut(s)	419, 1229
BstXI	CCANNNNNNTGG	2 cut(s)	631, 1114
BstYI	RGATCY	2 cut(s)	419, 1229
Bsu36I	CCTNAGG	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	215, 223, 1131
BtgI	CCRYGG	2 cut(s)	705, 1113
BtrI	CACGTC	2 cut(s)	135, 510
BtsCI	GGATG	5 cut(s)	65, 559, 706, 892, 1109
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	2 cut(s)	1089, 1344
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	5 cut(s)	351, 531, 646, 862, 1176
Cfr13I	GGNCC	3 cut(s)	222, 1129, 1130
CseI	GACGC	2 cut(s)	292, 609
Csp6I	GTAC	4 cut(s)	39, 881, 1136, 1273
CviAII	CATG	3 cut(s)	706, 1114, 1405
CviQI	GTAC	4 cut(s)	39, 881, 1136, 1273
DdeI	CTNAG	4 cut(s)	761, 951, 1078, 1233
DpnI	GATC	2 cut(s)	421, 1231
DpnII	GATC	2 cut(s)	419, 1229
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	171, 519, 1406
EarI	CTCTTC	3 cut(s)	171, 519, 1406
Eco130I	CCWWGG	2 cut(s)	705, 1113
Eco24I	GRGCYC	1 cut(s)	1133
Eco57I	CTGAAG	2 cut(s)	681, 1320
Eco81I	CCTNAGG	1 cut(s)	761
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	2 cut(s)	1129, 1130
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	705, 1113
EcoT22I	ATGCAT	1 cut(s)	1201
EcoT38I	GRGCYC	1 cut(s)	1133
ErhI	CCWWGG	2 cut(s)	705, 1113
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	3 cut(s)	709, 1117, 1408
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	3 cut(s)	705, 1113, 1404
FauI	CCCGC	1 cut(s)	1381
FokI	GGATG	5 cut(s)	52, 566, 713, 899, 1096
FriOI	GRGCYC	1 cut(s)	1133
FspBI	CTAG	3 cut(s)	645, 1103, 1122
HaeIII	GGCC	3 cut(s)	215, 223, 1131
HapII	CCGG	2 cut(s)	173, 1227
HgaI	GACGC	2 cut(s)	292, 609
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	3 cut(s)	709, 1117, 1408
HinfI	GANTC	2 cut(s)	722, 1380
HpaII	CCGG	2 cut(s)	173, 1227
HphI	GGTGA	4 cut(s)	76, 255, 584, 717
Hpy166II	GTNNAC	2 cut(s)	328, 624
Hpy188I	TCNGA	4 cut(s)	52, 952, 1155, 1288
Hpy188III	TCNNGA	2 cut(s)	694, 1262
Hpy8I	GTNNAC	2 cut(s)	328, 624
Hpy99I	CGWCG	3 cut(s)	52, 288, 308
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	943
HpyCH4IV	ACGT	3 cut(s)	134, 486, 509
HpyCH4V	TGCA	7 cut(s)	344, 641, 794, 803, 869, 1161, 1199
HpyF3I	CTNAG	4 cut(s)	761, 951, 1078, 1233
HpySE526I	ACGT	3 cut(s)	134, 486, 509
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	3 cut(s)	709, 1117, 1408
Kzo9I	GATC	2 cut(s)	419, 1229
LguI	GCTCTTC	2 cut(s)	171, 519
LmnI	GCTCC	5 cut(s)	107, 155, 612, 781, 1363
LweI	GCATC	2 cut(s)	691, 1186
MaeI	CTAG	3 cut(s)	645, 1103, 1122
MaeII	ACGT	3 cut(s)	134, 486, 509
MaeIII	GTNAC	2 cut(s)	587, 1090
MalI	GATC	2 cut(s)	421, 1231
MboI	GATC	2 cut(s)	419, 1229
MboII	GAAGA	7 cut(s)	188, 536, 1038, 1041, 1052, 1326, 1393
MfeI	CAATTG	2 cut(s)	245, 339
MflI	RGATCY	2 cut(s)	419, 1229
MhlI	GDGCHC	2 cut(s)	778, 1133
MluCI	AATT	9 cut(s)	29, 245, 339, 463, 789, 983, 1032, 1295, 1428
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	8 cut(s)	92, 116, 131, 134, 246, 625, 1120, 1428
Mph1103I	ATGCAT	1 cut(s)	1201
MseI	TTAA	5 cut(s)	290, 483, 825, 873, 1242
MslI	CAYNNNNRTG	1 cut(s)	1112
MspI	CCGG	2 cut(s)	173, 1227
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	2 cut(s)	245, 339
Mva1269I	GAATGC	1 cut(s)	1161
MvaI	CCWGG	1 cut(s)	584
NcoI	CCATGG	2 cut(s)	705, 1113
NdeII	GATC	2 cut(s)	419, 1229
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	3 cut(s)	709, 1117, 1408
NlaIV	GGNNCC	1 cut(s)	1131
NmeAIII	GCCGAG	2 cut(s)	596, 769
NsiI	ATGCAT	1 cut(s)	1201
NspV	TTCGAA	1 cut(s)	473
PciSI	GCTCTTC	2 cut(s)	171, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	1161
PfeI	GAWTC	2 cut(s)	722, 1380
PshAI	GACNNNNGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	1131
PspOMI	GGGCCC	1 cut(s)	1129
PspPI	GGNCC	3 cut(s)	222, 1129, 1130
PsuI	RGATCY	2 cut(s)	419, 1229
RsaI	GTAC	4 cut(s)	40, 882, 1137, 1274
RsaNI	GTAC	4 cut(s)	39, 881, 1136, 1273
RseI	CAYNNNNRTG	1 cut(s)	1112
SapI	GCTCTTC	2 cut(s)	171, 519
SaqAI	TTAA	5 cut(s)	290, 483, 825, 873, 1242
Sau3AI	GATC	2 cut(s)	419, 1229
Sau96I	GGNCC	3 cut(s)	222, 1129, 1130
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	778, 1133
SfaNI	GCATC	2 cut(s)	691, 1186
SfcI	CTRYAG	1 cut(s)	1248
SfuI	TTCGAA	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	1112
Sse9I	AATT	9 cut(s)	29, 245, 339, 463, 789, 983, 1032, 1295, 1428
SsiI	CCGC	4 cut(s)	115, 212, 932, 1388
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	3 cut(s)	645, 1103, 1122
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	2 cut(s)	705, 1113
TaaI	ACNGT	1 cut(s)	943
TaiI	ACGT	3 cut(s)	137, 489, 512
TaqI	TCGA	2 cut(s)	306, 473
TasI	AATT	9 cut(s)	29, 245, 339, 463, 789, 983, 1032, 1295, 1428
TatI	WGTACW	3 cut(s)	38, 880, 1272
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	722, 1380
Tru1I	TTAA	5 cut(s)	290, 483, 825, 873, 1242
Tru9I	TTAA	5 cut(s)	290, 483, 825, 873, 1242
TscAI	CASTG	2 cut(s)	1089, 1344
TspDTI	ATGAA	3 cut(s)	262, 1333, 1393
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	2 cut(s)	1089, 1344
XapI	RAATTY	2 cut(s)	1295, 1428
XspI	CTAG	3 cut(s)	645, 1103, 1122
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.