Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Forward (+)

17555897 .. 17556653

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAATTGGTCTCTCACACCACCACCTTCTCTGCATATATTCCTCCAAACCCAACCCACCATTTTCAAAAACTCAAACACTTTTCAGAAACCCGAAATCCTCCTCCGTCGCTCTCCGTACCCTCCTGAAGTCTTCGTCTCCGAAAAACTCCAACACTTCGCTGCAAAGTTCGCCGGAAGAATCGAGGCCCGCCGCCGCATCTAAGCCGGCAGACCCGCCCGGAAAAAACCCACCTCCCAGATTGTCTTCTTTCGACTCCCTGTTCATCCGACTTCGTCGTTTAAGAGCTGAAAGGTTTAAGCTTGATGGAATATTTGTGGACATTTTGGCGATTGCATTGCCTGCTGCTCTGGCGCTGGCTGCTGACCCCATTACCTCTTTGGTTGACACAGCCTTTGTTGGGCATTTAGTTATGGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

10.28

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	192, 195, 198, 218
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	2 cut(s)	290, 304
AluI	AGCT	2 cut(s)	290, 304
Alw26I	GTCTC	2 cut(s)	17, 144
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	163, 347, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	126, 240
BbvI	GCAGC	3 cut(s)	150, 334, 349
BccI	CCATC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	17, 144
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	5 cut(s)	164, 195, 198, 348, 363
BlsI	GCNGC	5 cut(s)	165, 196, 199, 349, 364
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	2 cut(s)	126, 240
BpuMI	CCSGG	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	150, 334, 349
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	176, 209, 222
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	2 cut(s)	17, 144
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	17
BspACI	CCGC	4 cut(s)	192, 195, 198, 218
BspANI	GGCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	192, 210, 345, 360
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	17, 144
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 344, 353, 362
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	150, 334, 349
BstV2I	GAAGAC	2 cut(s)	126, 240
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	192, 210, 345, 360
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	120
CviJI	RGCY	6 cut(s)	190, 208, 290, 304, 362, 395
CviKI_1	RGCY	6 cut(s)	190, 208, 290, 304, 362, 395
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	144
FaiI	YATR	3 cut(s)	38, 40, 416
FauI	CCCGC	2 cut(s)	199, 225
Fnu4HI	GCNGC	5 cut(s)	164, 195, 198, 348, 363
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	5 cut(s)	164, 195, 198, 348, 363
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	5 cut(s)	164, 195, 198, 348, 363
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	3 cut(s)	176, 209, 222
HhaI	GCGC	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	182, 257
HpaII	CCGG	3 cut(s)	176, 209, 222
Hpy166II	GTNNAC	2 cut(s)	322, 388
Hpy188I	TCNGA	3 cut(s)	89, 144, 272
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	322, 388
Hpy99I	CGWCG	2 cut(s)	113, 282
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	36, 166, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 344, 353, 362
HpyF3I	CTNAG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	356
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
LpnPI	CCDG	9 cut(s)	140, 189, 222, 235, 253, 275, 338, 344, 357
Lsp1109I	GCAGC	3 cut(s)	150, 334, 349
LweI	GCATC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	126, 191, 240
MfeI	CAATTG	1 cut(s)	6
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	177, 295
MnlI	CCTC	7 cut(s)	55, 112, 115, 134, 180, 246, 388
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	2 cut(s)	284, 300
MspI	CCGG	3 cut(s)	176, 209, 222
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	172, 344, 353, 362
NaeI	GCCGGC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	182
PflFI	GACNNNGTC	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	165, 196, 199, 349, 364
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	284, 300
SatI	GCNGC	5 cut(s)	164, 195, 198, 348, 363
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	6 cut(s)	30, 238, 292, 299, 306, 380
SfaNI	GCATC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	4 cut(s)	192, 195, 198, 218
SspI	AATATT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	220
TaqI	TCGA	2 cut(s)	185, 255
TasI	AATT	1 cut(s)	6
TauI	GCSGC	2 cut(s)	197, 200
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	284, 300
Tru9I	TTAA	2 cut(s)	284, 300
TseI	GCWGC	3 cut(s)	163, 347, 362
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	2 cut(s)	97, 107
Tth111I	GACNNNGTC	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.