Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373083.1

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 928

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373083.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

atggcgagttctctctcgctctcgcaccaattcctatgtacatattcgtcggaaaccaaccaatcatccaagacacaacccctcaccagaaccccaaaacgctccctcgctctccgcaccctcctcaaatccacgtctcccaagaacagctccacttcacttcaaagttcgccggaagagccaaaccccattatcaaaaaacccaaaagggcggccaatcggcccgacccaagtcctccttcccaattgtccttattcaactcacccttgttcattcggcttcgtcgtttaagagatgagagcgtcgagtatgatgggattgttgtggacattttatcaattgcattgcctgctgctttggctctggctgctgaccccattgcttctttgattgatacagcctttgttgggcatttaggatctgtggaactggcagcagttggtgtttcggcttcggtgttcaatttggtttcgaagttgtttaacgttccattgctcaacattaccacgtctttcgttgccgaagagcaggcattagttggcaaggcaaaggatggttctcaacagattggtgatgattgccagggttacaaggaaagcaagaagctcctaccctcggcgtccacttcgttggctcttgcagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

215

Amino Acids

22.86

Weight (kDa)

9.12

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 212
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	408, 616
AgsI	TTSAA	3 cut(s)	164, 259, 463
AjiI	CACGTC	2 cut(s)	135, 510
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	2 cut(s)	150, 607
AluI	AGCT	2 cut(s)	150, 607
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	2 cut(s)	213, 221
ApeKI	GCWGC	4 cut(s)	353, 368, 434, 641
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	76, 255, 584
AsuII	TTCGAA	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	340, 355, 446
BccI	CCATC	2 cut(s)	308, 548
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	141
BisI	GCNGC	5 cut(s)	213, 354, 369, 435, 642
BlsI	GCNGC	5 cut(s)	214, 355, 370, 436, 643
Bme1390I	CCNGG	1 cut(s)	584
BmgBI	CACGTC	2 cut(s)	135, 510
BmgT120I	GGNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	584
BoxI	GACNNNNGTC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	583, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 616
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	3 cut(s)	344, 378, 491
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	583, 615
BseGI	GGATG	2 cut(s)	65, 559
BseLI	CCNNNNNNNGG	2 cut(s)	408, 616
BseMI	GCAATG	3 cut(s)	344, 378, 491
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	340, 355, 446
BshFI	GGCC	2 cut(s)	215, 223
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	408, 616
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	215, 223
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	419
BspACI	CCGC	2 cut(s)	115, 212
BspANI	GGCC	2 cut(s)	215, 223
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	2 cut(s)	171, 519
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	3 cut(s)	344, 378, 491
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	583, 615
BssMI	GATC	1 cut(s)	419
BssNI	GRCGYC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	584
Bst6I	CTCTTC	2 cut(s)	171, 519
BstACI	GRCGYC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	351, 531
BstF5I	GGATG	2 cut(s)	65, 559
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
BstNI	CCWGG	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	340, 355, 446
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	215, 223
BtrI	CACGTC	2 cut(s)	135, 510
BtsCI	GGATG	2 cut(s)	65, 559
Cac8I	GCNNGC	2 cut(s)	351, 531
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	2 cut(s)	292, 609
Csp6I	GTAC	1 cut(s)	39
CviQI	GTAC	1 cut(s)	39
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	171, 519
EarI	CTCTTC	2 cut(s)	171, 519
EcoRII	CCWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	141
FaiI	YATR	3 cut(s)	37, 43, 312
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
Fnu4HI	GCNGC	5 cut(s)	213, 354, 369, 435, 642
FokI	GGATG	2 cut(s)	52, 566
Fsp4HI	GCNGC	5 cut(s)	213, 354, 369, 435, 642
GluI	GCNGC	5 cut(s)	213, 354, 369, 435, 642
HaeIII	GGCC	2 cut(s)	215, 223
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	2 cut(s)	292, 609
Hin1I	GRCGYC	1 cut(s)	620
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	76, 255, 584
Hpy166II	GTNNAC	2 cut(s)	328, 624
Hpy188I	TCNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	328, 624
Hpy99I	CGWCG	3 cut(s)	52, 288, 308
HpyAV	CCTTC	1 cut(s)	249
HpyCH4IV	ACGT	3 cut(s)	134, 486, 509
HpyCH4V	TGCA	2 cut(s)	344, 641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
HpySE526I	ACGT	3 cut(s)	134, 486, 509
Hsp92I	GRCGYC	1 cut(s)	620
Kzo9I	GATC	1 cut(s)	419
LguI	GCTCTTC	2 cut(s)	171, 519
LmnI	GCTCC	3 cut(s)	107, 155, 612
LpnPI	CCDG	8 cut(s)	100, 186, 350, 363, 416, 515, 569, 596
Lsp1109I	GCAGC	3 cut(s)	340, 355, 446
MaeII	ACGT	3 cut(s)	134, 486, 509
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	2 cut(s)	188, 536
MfeI	CAATTG	2 cut(s)	245, 339
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	4 cut(s)	29, 245, 339, 463
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	92, 116, 131, 134, 246, 625
MseI	TTAA	2 cut(s)	290, 483
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	2 cut(s)	245, 339
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	5 cut(s)	178, 350, 359, 368, 641
NdeII	GATC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	473
PciSI	GCTCTTC	2 cut(s)	171, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PkrI	GCNGC	5 cut(s)	214, 355, 370, 436, 643
PshAI	GACNNNNGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SapI	GCTCTTC	2 cut(s)	171, 519
SaqAI	TTAA	2 cut(s)	290, 483
SatI	GCNGC	5 cut(s)	213, 354, 369, 435, 642
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	584
SetI	ASST	5 cut(s)	137, 152, 489, 512, 609
SfuI	TTCGAA	1 cut(s)	473
Sse9I	AATT	4 cut(s)	29, 245, 339, 463
SsiI	CCGC	2 cut(s)	115, 212
StyD4I	CCNGG	1 cut(s)	582
TaiI	ACGT	3 cut(s)	137, 489, 512
TaqI	TCGA	2 cut(s)	306, 473
TasI	AATT	4 cut(s)	29, 245, 339, 463
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	290, 483
Tru9I	TTAA	2 cut(s)	290, 483
TseI	GCWGC	4 cut(s)	353, 368, 434, 641
TspDTI	ATGAA	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.