AT2G38480

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012275
Physical Location & Seq
Reverse (-)
16110741 .. 16111911
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38480.1

Sequence Viewer

Length: 567 bp
ATGACGAATCCCGATAACATGAAACCGGTTGAAGCTACTGACGTGGAATCTGCGGCGGAGAAGACGTCGGAGCCGACGCCGGCATCTGGAACGTCGACGATTACTCAGAGATGGAAAAGAGAGGATTTGATAAAGAAAGCATCTCCGATTACGAGAGGAATCTGTCTTTTGTTCTCTCTTATTGCTTTCTTAATTATGGTCTCTAATAAACATGGTTACGGTAGAAACTTCAATGACTACGAAGAGTACAGATATGTATTGGCGATTTCGATTATTTCAACATTATACACTGCGTGGCAAACATTTGCACATTTCTCAAAAAGGGAAATTTTCGATCGCCGGACTTCTATTTTGGTCGATTTCTCCGGCGACCAGATTGTGGCGTATTTGCTTATATCAGCTGCATCATCTGCAATTCCATTGACAAACATATTCAGAGAAGGTCAAGATAACATTTTCACTGATTCTGCTGCTTCTGCTATAAGTATGGCTATCTTCGCATTCATTGCTTTAGCTCTCTCTGCTCTCTTCTCCGGTTACAAACTCTCCACTCATTCTTTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

188

Amino Acids

20.89

Weight (kDa)

6.29

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 43 - 170 1.8e-26 Casparian strip membrane protein domain
MARVEL PF01284 50 - 177 3.3e-07 Membrane-associating domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38480
fragaria_vesca FvH4_6g10520
malus_domestica MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis pycom04g14880 pycom12g17050
rosa_chinensis RchiOBHm_Chr3g0461491
rosa_laevigata RLG00000024930
rosa_multiflora Rmu_sc0002677.1_g000004
rosa_roxburghii Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa Rorug03G0051200.1
rosa_samantha Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana Rw3G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 379
AccI GTMKAC 1 cut(s) 95
AciI CCGC 2 cut(s) 53, 56
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 2 cut(s) 65, 77
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 86, 379
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 32, 232, 279
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 3 cut(s) 35, 401, 515
AluI AGCT 3 cut(s) 35, 401, 515
Alw26I GTCTC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 401, 470
ApoI RAATTY 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AsiGI ACCGGT 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 388, 457
BccI CCATC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 3 cut(s) 54, 402, 471
BlsI GCNGC 3 cut(s) 55, 403, 472
BmgBI CACGTC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 3 cut(s) 92, 149, 413
BpiI GAAGAC 1 cut(s) 68
BsaHI GRCGYC 2 cut(s) 65, 77
BsaI GGTCTC 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 25, 533
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 379
Bse118I RCCGGY 2 cut(s) 25, 79
Bse3DI GCAATG 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 86, 379
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 388, 457
Bsh1285I CGRYCG 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 5 cut(s) 26, 80, 340, 366, 534
BslI CCNNNNNNNGG 2 cut(s) 86, 379
BsmAI GTCTC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 500
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 53, 56
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 25, 79
BssAI RCCGGY 2 cut(s) 25, 79
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 2 cut(s) 65, 77
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 237, 533
BstACI GRCGYC 2 cut(s) 65, 77
BstAPI GCANNNNNTGC 2 cut(s) 410, 506
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 5 cut(s) 410, 476, 497, 506, 521
BstV1I GCAGC 2 cut(s) 388, 457
BstV2I GAAGAC 1 cut(s) 68
BtrI CACGTC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 459
Cac8I GCNNGC 1 cut(s) 81
Cfr10I RCCGGY 2 cut(s) 25, 79
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 247
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 2 cut(s) 19, 212
CviJI RGCY 5 cut(s) 35, 73, 401, 491, 515
CviKI_1 RGCY 5 cut(s) 35, 73, 401, 491, 515
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 237, 533
EarI CTCTTC 2 cut(s) 237, 533
EciI GGCGGA 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 205
FaeI CATG 2 cut(s) 22, 215
FaiI YATR 9 cut(s) 20, 197, 213, 255, 286, 395, 431, 482, 488
FatI CATG 2 cut(s) 18, 211
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 54, 402, 471
Fsp4HI GCNGC 3 cut(s) 54, 402, 471
GluI GCNGC 3 cut(s) 54, 402, 471
HapII CCGG 5 cut(s) 26, 80, 340, 366, 534
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 2 cut(s) 65, 77
Hin1II CATG 2 cut(s) 22, 215
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 4 cut(s) 7, 47, 159, 464
HpaII CCGG 5 cut(s) 26, 80, 340, 366, 534
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 5 cut(s) 70, 108, 147, 437, 566
Hpy188III TCNNGA 3 cut(s) 11, 87, 446
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 4 cut(s) 70, 79, 97, 100
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 3 cut(s) 42, 65, 92
HpyCH4V TGCA 3 cut(s) 308, 404, 413
HpyF10VI GCNNNNNNNGC 5 cut(s) 410, 476, 497, 506, 521
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 3 cut(s) 42, 65, 92
Hsp92I GRCGYC 2 cut(s) 65, 77
Hsp92II CATG 2 cut(s) 22, 215
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 39, 72, 93, 353, 379, 386, 547
Lsp1109I GCAGC 2 cut(s) 388, 457
LweI GCATC 3 cut(s) 92, 149, 413
MaeII ACGT 3 cut(s) 42, 65, 92
MaeIII GTNAC 2 cut(s) 215, 536
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 73, 254, 487, 520
MluCI AATT 3 cut(s) 192, 327, 414
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 115, 149
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 5 cut(s) 26, 80, 340, 366, 534
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 5 cut(s) 410, 476, 497, 506, 521
NaeI GCCGGC 1 cut(s) 81
NdeII GATC 1 cut(s) 334
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 2 cut(s) 22, 215
NlaIV GGNNCC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 500
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 4 cut(s) 7, 47, 159, 464
PflMI CCANNNNNTGG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 3 cut(s) 55, 403, 472
Ple19I CGATCG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 72
PvuI CGATCG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 3 cut(s) 54, 402, 471
Sau3AI GATC 1 cut(s) 334
SetI ASST 7 cut(s) 37, 45, 68, 95, 403, 445, 517
SfaNI GCATC 3 cut(s) 92, 149, 413
SgrDI CGTCGACG 1 cut(s) 94
Sse9I AATT 3 cut(s) 192, 327, 414
SsiI CCGC 2 cut(s) 53, 56
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 3 cut(s) 45, 68, 95
TaqI TCGA 4 cut(s) 95, 269, 333, 357
TasI AATT 3 cut(s) 192, 327, 414
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 7, 47, 159, 464
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 2 cut(s) 295, 466
TseI GCWGC 2 cut(s) 401, 470
TspDTI ATGAA 2 cut(s) 35, 493
TspRI CASTG 2 cut(s) 295, 466
Van91I CCANNNNNTGG 1 cut(s) 379
XapI RAATTY 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 95
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.