Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012275

Physical Location & Seq

Genomic Coordinates Reverse (-)

9191956 .. 9193139

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGACGAATCAAGACGACGCGTCGCAGAATCATGACCAGCAACAAGAAAAACAATCCCCGCCGGTTGTCCCACCGGCTGCTGCTGACGTGGAGAGCCAGACGGAGCCGGCACCGGCCCAGGCCGGGGCGGCTGGGAGCGGGTTCGGGGTGGCAGGGATCATACGGCGGTGGAAGAGAGATGACTTGTTGAGGAAAGGCTCTCTGGCGTTGAGAGGACTGTCCTTGGTCTTTTCTTTGCTGGCTTTCATCATCATGGCCAGTAACAAACACGGGGATTGGAAAGACTTCGACAAATATGAAGAATACAGGTATCTGTTGGGAATAGCGATATTGGCGACGTTGTACACCGGCGCACAAGCTTTCAAAAATGCCACAGGGAAAGAGATGTTTCAGCGCCGGACGTCGGCGTTGGCCGACTTCATCGGAGATCAGATTATGGCATACCTTCTGATATCATCATCATCTTCGGCGATTCCGTTAACAAATAGGATGAGGGAATCACAAGACAACATCTTTACAGACGCCTCTGCATCTGCCATTAGTATGGCTTTTCTCGCTTTCGTTTCCCTTGCACTCTTGGCCCTCATTTCCGGACACAAGTTATCTTCTCAGTCTTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

208

Amino Acids

22.57

Weight (kDa)

6.29

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	63 - 189	9.5e-27	Casparian strip membrane protein domain
MARVEL	PF01284	65 - 194	1.5e-08	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38480
fragaria_vesca	FvH4_6g10520
malus_domestica	MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica	Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis	pycom04g14880 pycom12g17050
rosa_chinensis	RchiOBHm_Chr3g0461491
rosa_laevigata	RLG00000024930
rosa_multiflora	Rmu_sc0002677.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa	Rorug03G0051200.1
rosa_samantha	Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana	Rw3G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	4 cut(s)	62, 131, 141, 169
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	2 cut(s)	258, 414
AcyI	GRCGYC	2 cut(s)	404, 525
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	126, 127, 406
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
AlwI	GGATC	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	5 cut(s)	117, 123, 258, 414, 582
ApeKI	GCWGC	2 cut(s)	80, 83
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	356, 399
AspS9I	GGNCC	2 cut(s)	118, 583
AsuC2I	CCSGG	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	67, 70
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	81, 84, 132
BlsI	GCNGC	3 cut(s)	82, 85, 133
Bme1390I	CCNGG	2 cut(s)	122, 127
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	118, 583
BmiI	GGNNCC	2 cut(s)	108, 114
BmrFI	CCNGG	2 cut(s)	122, 127
BmsI	GCATC	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	404, 525
BsaJI	CCNNGG	3 cut(s)	120, 126, 225
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 127, 406
Bse118I	RCCGGY	5 cut(s)	64, 76, 109, 115, 350
Bse1I	ACTGG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	120, 126, 225
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	126, 127, 406
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	67, 70
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	5 cut(s)	119, 125, 260, 416, 584
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	8 cut(s)	65, 77, 110, 116, 126, 351, 400, 594
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	126, 127, 406
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	5 cut(s)	119, 125, 260, 416, 584
Bsp13I	TCCGGA	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	159, 430
BspACI	CCGC	4 cut(s)	62, 131, 141, 169
BspANI	GGCC	5 cut(s)	119, 125, 260, 416, 584
BspCNI	CTCAG	1 cut(s)	625
BspEI	TCCGGA	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	108, 114
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	141
BsrFI	RCCGGY	5 cut(s)	64, 76, 109, 115, 350
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	5 cut(s)	64, 76, 109, 115, 350
BssECI	CCNNGG	3 cut(s)	120, 126, 225
BssMI	GATC	2 cut(s)	159, 430
BssNI	GRCGYC	2 cut(s)	404, 525
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	404, 525
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	111, 243
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	356, 399
BstKTI	GATC	2 cut(s)	162, 433
BstMBI	GATC	2 cut(s)	159, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 335, 557, 581
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	120, 125
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	67, 70
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuRI	GGCC	5 cut(s)	119, 125, 260, 416, 584
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	111, 243
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	2 cut(s)	356, 399
Cfr10I	RCCGGY	5 cut(s)	64, 76, 109, 115, 350
Cfr13I	GGNCC	2 cut(s)	118, 583
CseI	GACGC	3 cut(s)	12, 29, 533
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	35, 256
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	2 cut(s)	161, 432
DpnII	GATC	2 cut(s)	159, 430
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	258, 414
Eam1104I	CTCTTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	38, 259
FaiI	YATR	7 cut(s)	36, 164, 257, 300, 440, 445, 548
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	34, 255
FauI	CCCGC	2 cut(s)	69, 134
Fnu4HI	GCNGC	3 cut(s)	81, 84, 132
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	81, 84, 132
GlaI	GCGC	2 cut(s)	355, 398
GluI	GCNGC	3 cut(s)	81, 84, 132
GsaI	CCCAGC	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	5 cut(s)	119, 125, 260, 416, 584
HapII	CCGG	8 cut(s)	65, 77, 110, 116, 126, 351, 400, 594
HgaI	GACGC	3 cut(s)	12, 29, 533
HhaI	GCGC	2 cut(s)	356, 399
Hin1I	GRCGYC	2 cut(s)	404, 525
Hin1II	CATG	2 cut(s)	38, 259
Hin6I	GCGC	2 cut(s)	354, 397
HinP1I	GCGC	2 cut(s)	354, 397
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	4 cut(s)	10, 31, 475, 500
HpaI	GTTAAC	1 cut(s)	483
HpaII	CCGG	8 cut(s)	65, 77, 110, 116, 126, 351, 400, 594
Hpy166II	GTNNAC	2 cut(s)	348, 483
Hpy188I	TCNGA	4 cut(s)	428, 435, 453, 626
Hpy188III	TCNNGA	3 cut(s)	14, 35, 594
Hpy8I	GTNNAC	2 cut(s)	348, 483
Hpy99I	CGWCG	5 cut(s)	10, 23, 28, 343, 409
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	3 cut(s)	90, 341, 404
HpyCH4V	TGCA	2 cut(s)	533, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 335, 557, 581
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	3 cut(s)	90, 341, 404
Hsp92I	GRCGYC	2 cut(s)	404, 525
Hsp92II	CATG	2 cut(s)	38, 259
HspAI	GCGC	2 cut(s)	354, 397
Kpn2I	TCCGGA	1 cut(s)	593
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	159, 430
LmnI	GCTCC	2 cut(s)	106, 138
Lsp1109I	GCAGC	2 cut(s)	67, 70
LweI	GCATC	1 cut(s)	542
MaeII	ACGT	3 cut(s)	90, 341, 404
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	161, 432
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	2 cut(s)	159, 430
MboII	GAAGA	4 cut(s)	187, 314, 459, 600
MlsI	TGGCCA	1 cut(s)	260
MluI	ACGCGT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	260
MnlI	CCTC	5 cut(s)	186, 209, 489, 538, 596
Mox20I	TGGCCA	1 cut(s)	260
MroI	TCCGGA	1 cut(s)	593
MroNI	GCCGGC	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	2 cut(s)	254, 545
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	8 cut(s)	65, 77, 110, 116, 126, 351, 400, 594
MspR9I	CCNGG	2 cut(s)	122, 127
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	131, 335, 557, 581
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	159, 430
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	38, 259
NlaIV	GGNNCC	2 cut(s)	108, 114
PagI	TCATGA	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PdiI	GCCGGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	10, 31, 475, 500
PkrI	GCNGC	3 cut(s)	82, 85, 133
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	108, 114
PspPI	GGNCC	2 cut(s)	118, 583
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	254, 545
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	81, 84, 132
Sau3AI	GATC	2 cut(s)	159, 430
Sau96I	GGNCC	2 cut(s)	118, 583
ScrFI	CCNGG	2 cut(s)	122, 127
SetI	ASST	6 cut(s)	93, 314, 344, 364, 407, 450
SfaNI	GCATC	1 cut(s)	542
SgrAI	CRCCGGYG	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	254, 545
SsiI	CCGC	4 cut(s)	62, 131, 141, 169
StyD4I	CCNGG	2 cut(s)	120, 125
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	3 cut(s)	93, 344, 407
TaqI	TCGA	1 cut(s)	291
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	10, 31, 475, 500
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TseI	GCWGC	2 cut(s)	80, 83
TspDTI	ATGAA	3 cut(s)	238, 315, 412
TspGWI	ACGGA	2 cut(s)	119, 468
XmnI	GAANNNNTTC	1 cut(s)	287
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.