Belongs to the Casparian strip membrane proteins (CASP) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38480 |
| fragaria_vesca | FvH4_6g10520 |
| malus_domestica | MD04G1167600.v1.1 MD12G1180900.v1.1 |
| prunus_persica | Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1 |
| pyrus_communis | pycom04g14880 pycom12g17050 |
| rosa_chinensis | RchiOBHm_Chr3g0461491 |
| rosa_laevigata | RLG00000024930 |
| rosa_multiflora | Rmu_sc0002677.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00418240 Rroxscaffold_6G00418570 |
| rosa_rugosa | Rorug03G0051200.1 |
| rosa_samantha | Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400 |
| rosa_wichuraiana | Rw3G009260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 413 |
| AccB1I | GGYRCC | 1 cut(s) | 67 |
| AccI | GTMKAC | 1 cut(s) | 332 |
| AccII | CGCG | 1 cut(s) | 361 |
| AciI | CCGC | 5 cut(s) | 53, 59, 149, 160, 543 |
| AclWI | GGATC | 4 cut(s) | 42, 55, 148, 161 |
| AcoI | YGGCCR | 1 cut(s) | 252 |
| AcuI | CTGAAG | 1 cut(s) | 519 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 341 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AjiI | CACGTC | 1 cut(s) | 21 |
| AjnI | CCWGG | 1 cut(s) | 312 |
| AleI | CACNNNNGTG | 1 cut(s) | 347 |
| AluBI | AGCT | 2 cut(s) | 376, 470 |
| AluI | AGCT | 2 cut(s) | 376, 470 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| AlwI | GGATC | 4 cut(s) | 42, 55, 148, 161 |
| AoxI | GGCC | 4 cut(s) | 112, 237, 252, 555 |
| ApeKI | GCWGC | 2 cut(s) | 86, 356 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 281, 396 |
| AspLEI | GCGC | 2 cut(s) | 361, 405 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuC2I | CCSGG | 1 cut(s) | 111 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| BaeGI | GKGCMC | 1 cut(s) | 134 |
| BalI | TGGCCA | 1 cut(s) | 254 |
| BamHI | GGATCC | 2 cut(s) | 47, 153 |
| BanI | GGYRCC | 1 cut(s) | 67 |
| BbsI | GAAGAC | 1 cut(s) | 217 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvI | GCAGC | 2 cut(s) | 73, 368 |
| BccI | CCATC | 1 cut(s) | 159 |
| BceAI | ACGGC | 3 cut(s) | 31, 90, 283 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 121, 155 |
| BciT130I | CCWGG | 1 cut(s) | 314 |
| BcnI | CCSGG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 1 cut(s) | 406 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 587 |
| BisI | GCNGC | 3 cut(s) | 87, 161, 357 |
| BlsI | GCNGC | 3 cut(s) | 88, 162, 358 |
| Bme1390I | CCNGG | 2 cut(s) | 111, 314 |
| BmgBI | CACGTC | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 4 cut(s) | 49, 69, 78, 155 |
| BmrFI | CCNGG | 2 cut(s) | 111, 314 |
| BmsI | GCATC | 1 cut(s) | 548 |
| BpiI | GAAGAC | 1 cut(s) | 217 |
| Bpu10I | CCTNAGC | 1 cut(s) | 418 |
| BpuMI | CCSGG | 1 cut(s) | 111 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaWI | WCCGGW | 1 cut(s) | 599 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 362, 392 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| Bse118I | RCCGGY | 3 cut(s) | 82, 344, 383 |
| Bse1I | ACTGG | 1 cut(s) | 62 |
| BseBI | CCWGG | 1 cut(s) | 314 |
| BseGI | GGATG | 2 cut(s) | 31, 539 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BseMII | CTCAG | 3 cut(s) | 134, 197, 632 |
| BseNI | ACTGG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 1 cut(s) | 134 |
| BseXI | GCAGC | 2 cut(s) | 73, 368 |
| Bsh1236I | CGCG | 1 cut(s) | 361 |
| BshFI | GGCC | 4 cut(s) | 114, 239, 254, 557 |
| BshNI | GGYRCC | 1 cut(s) | 67 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiSI | CCGG | 6 cut(s) | 83, 110, 345, 384, 406, 600 |
| BslFI | GGGAC | 1 cut(s) | 225 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsmFI | GGGAC | 1 cut(s) | 225 |
| BsnI | GGCC | 4 cut(s) | 114, 239, 254, 557 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 134 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| Bsp143I | GATC | 3 cut(s) | 47, 153, 436 |
| BspACI | CCGC | 5 cut(s) | 53, 59, 149, 160, 543 |
| BspANI | GGCC | 4 cut(s) | 114, 239, 254, 557 |
| BspCNI | CTCAG | 3 cut(s) | 133, 198, 631 |
| BspFNI | CGCG | 1 cut(s) | 361 |
| BspLI | GGNNCC | 4 cut(s) | 49, 69, 78, 155 |
| BspPI | GGATC | 4 cut(s) | 42, 55, 148, 161 |
| BspT107I | GGYRCC | 1 cut(s) | 67 |
| BsrFI | RCCGGY | 3 cut(s) | 82, 344, 383 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 62 |
| BssAI | RCCGGY | 3 cut(s) | 82, 344, 383 |
| BssMI | GATC | 3 cut(s) | 47, 153, 436 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| Bst2UI | CCWGG | 1 cut(s) | 314 |
| Bst4CI | ACNGT | 2 cut(s) | 216, 612 |
| Bst6I | CTCTTC | 3 cut(s) | 164, 184, 538 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstC8I | GCNNGC | 5 cut(s) | 42, 237, 256, 350, 354 |
| BstDEI | CTNAG | 4 cut(s) | 120, 206, 418, 618 |
| BstF5I | GGATG | 2 cut(s) | 31, 539 |
| BstFNI | CGCG | 1 cut(s) | 361 |
| BstH2I | RGCGCY | 1 cut(s) | 406 |
| BstHHI | GCGC | 2 cut(s) | 361, 405 |
| BstKTI | GATC | 3 cut(s) | 50, 156, 439 |
| BstMBI | GATC | 3 cut(s) | 47, 153, 436 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 67, 83, 358, 476, 563, 587 |
| BstNI | CCWGG | 1 cut(s) | 314 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 2 cut(s) | 109, 312 |
| BstSLI | GKGCMC | 1 cut(s) | 134 |
| BstUI | CGCG | 1 cut(s) | 361 |
| BstV1I | GCAGC | 2 cut(s) | 73, 368 |
| BstV2I | GAAGAC | 1 cut(s) | 217 |
| BstX2I | RGATCY | 2 cut(s) | 47, 153 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 553 |
| BstYI | RGATCY | 2 cut(s) | 47, 153 |
| BsuRI | GGCC | 4 cut(s) | 114, 239, 254, 557 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtrI | CACGTC | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 31, 539 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 5 cut(s) | 42, 237, 256, 350, 354 |
| CfoI | GCGC | 2 cut(s) | 361, 405 |
| Cfr10I | RCCGGY | 3 cut(s) | 82, 344, 383 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| CseI | GACGC | 1 cut(s) | 343 |
| Csp6I | GTAC | 1 cut(s) | 340 |
| CviAII | CATG | 4 cut(s) | 116, 250, 365, 553 |
| CviQI | GTAC | 1 cut(s) | 340 |
| DdeI | CTNAG | 4 cut(s) | 120, 206, 418, 618 |
| DpnI | GATC | 3 cut(s) | 49, 155, 438 |
| DpnII | GATC | 3 cut(s) | 47, 153, 436 |
| EaeI | YGGCCR | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 3 cut(s) | 164, 184, 538 |
| EarI | CTCTTC | 3 cut(s) | 164, 184, 538 |
| EciI | GGCGGA | 1 cut(s) | 532 |
| Eco32I | GATATC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 1 cut(s) | 519 |
| EcoRII | CCWGG | 1 cut(s) | 312 |
| EcoRV | GATATC | 1 cut(s) | 462 |
| FaeI | CATG | 4 cut(s) | 119, 253, 368, 556 |
| FaiI | YATR | 9 cut(s) | 117, 251, 294, 309, 366, 446, 451, 521, 554 |
| FaqI | GGGAC | 1 cut(s) | 225 |
| FatI | CATG | 4 cut(s) | 115, 249, 364, 552 |
| FauI | CCCGC | 2 cut(s) | 60, 142 |
| FblI | GTMKAC | 1 cut(s) | 332 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 161, 357 |
| FokI | GGATG | 2 cut(s) | 18, 526 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 161, 357 |
| GlaI | GCGC | 2 cut(s) | 360, 404 |
| GluI | GCNGC | 3 cut(s) | 87, 161, 357 |
| HaeII | RGCGCY | 1 cut(s) | 406 |
| HaeIII | GGCC | 4 cut(s) | 114, 239, 254, 557 |
| HapII | CCGG | 6 cut(s) | 83, 110, 345, 384, 406, 600 |
| HgaI | GACGC | 1 cut(s) | 343 |
| HhaI | GCGC | 2 cut(s) | 361, 405 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 4 cut(s) | 119, 253, 368, 556 |
| Hin6I | GCGC | 2 cut(s) | 359, 403 |
| HinP1I | GCGC | 2 cut(s) | 359, 403 |
| HincII | GTYRAC | 2 cut(s) | 333, 489 |
| HindII | GTYRAC | 2 cut(s) | 333, 489 |
| HinfI | GANTC | 4 cut(s) | 106, 325, 506, 530 |
| HpaII | CCGG | 6 cut(s) | 83, 110, 345, 384, 406, 600 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 4 cut(s) | 333, 342, 370, 489 |
| Hpy188I | TCNGA | 5 cut(s) | 123, 143, 207, 441, 632 |
| Hpy188III | TCNNGA | 1 cut(s) | 35 |
| Hpy8I | GTNNAC | 4 cut(s) | 333, 342, 370, 489 |
| Hpy99I | CGWCG | 4 cut(s) | 25, 76, 337, 478 |
| HpyAV | CCTTC | 2 cut(s) | 250, 568 |
| HpyCH4III | ACNGT | 2 cut(s) | 216, 612 |
| HpyCH4IV | ACGT | 2 cut(s) | 20, 410 |
| HpyCH4V | TGCA | 1 cut(s) | 352 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 67, 83, 358, 476, 563, 587 |
| HpyF3I | CTNAG | 4 cut(s) | 120, 206, 418, 618 |
| HpySE526I | ACGT | 2 cut(s) | 20, 410 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 4 cut(s) | 119, 253, 368, 556 |
| HspAI | GCGC | 2 cut(s) | 359, 403 |
| Kzo9I | GATC | 3 cut(s) | 47, 153, 436 |
| LmnI | GCTCC | 1 cut(s) | 82 |
| Lsp1109I | GCAGC | 2 cut(s) | 73, 368 |
| LweI | GCATC | 1 cut(s) | 548 |
| MaeII | ACGT | 2 cut(s) | 20, 410 |
| MaeIII | GTNAC | 2 cut(s) | 571, 602 |
| MalI | GATC | 3 cut(s) | 49, 155, 438 |
| MboI | GATC | 3 cut(s) | 47, 153, 436 |
| MboII | GAAGA | 5 cut(s) | 181, 201, 217, 308, 525 |
| MflI | RGATCY | 2 cut(s) | 47, 153 |
| MhlI | GDGCHC | 2 cut(s) | 42, 134 |
| MlsI | TGGCCA | 1 cut(s) | 254 |
| MluCI | AATT | 3 cut(s) | 289, 392, 480 |
| MluNI | TGGCCA | 1 cut(s) | 254 |
| MlyI | GAGTC | 2 cut(s) | 100, 524 |
| MnlI | CCTC | 4 cut(s) | 169, 185, 201, 572 |
| Mox20I | TGGCCA | 1 cut(s) | 254 |
| MroXI | GAANNNNTTC | 2 cut(s) | 281, 396 |
| MscI | TGGCCA | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 3 cut(s) | 248, 347, 551 |
| Msp20I | TGGCCA | 1 cut(s) | 254 |
| MspI | CCGG | 6 cut(s) | 83, 110, 345, 384, 406, 600 |
| MspR9I | CCNGG | 2 cut(s) | 111, 314 |
| MvaI | CCWGG | 1 cut(s) | 314 |
| MvnI | CGCG | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 67, 83, 358, 476, 563, 587 |
| NciI | CCSGG | 1 cut(s) | 111 |
| NdeII | GATC | 3 cut(s) | 47, 153, 436 |
| NlaIII | CATG | 4 cut(s) | 119, 253, 368, 556 |
| NlaIV | GGNNCC | 4 cut(s) | 49, 69, 78, 155 |
| NspI | RCATGY | 1 cut(s) | 368 |
| OliI | CACNNNNGTG | 1 cut(s) | 347 |
| PciI | ACATGT | 1 cut(s) | 364 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 482 |
| PdmI | GAANNNNTTC | 2 cut(s) | 281, 396 |
| PfeI | GAWTC | 2 cut(s) | 325, 506 |
| PkrI | GCNGC | 3 cut(s) | 88, 162, 358 |
| PleI | GAGTC | 2 cut(s) | 100, 524 |
| PpsI | GAGTC | 2 cut(s) | 100, 524 |
| PscI | ACATGT | 1 cut(s) | 364 |
| Psp6I | CCWGG | 1 cut(s) | 312 |
| PspGI | CCWGG | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 4 cut(s) | 49, 69, 78, 155 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PsuI | RGATCY | 2 cut(s) | 47, 153 |
| RsaI | GTAC | 1 cut(s) | 341 |
| RsaNI | GTAC | 1 cut(s) | 340 |
| RseI | CAYNNNNRTG | 3 cut(s) | 248, 347, 551 |
| SalI | GTCGAC | 1 cut(s) | 331 |
| SatI | GCNGC | 3 cut(s) | 87, 161, 357 |
| Sau3AI | GATC | 3 cut(s) | 47, 153, 436 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SchI | GAGTC | 2 cut(s) | 100, 524 |
| ScrFI | CCNGG | 2 cut(s) | 111, 314 |
| SduI | GDGCHC | 2 cut(s) | 42, 134 |
| SetI | ASST | 6 cut(s) | 10, 23, 308, 378, 413, 472 |
| SfaNI | GCATC | 1 cut(s) | 548 |
| SgrAI | CRCCGGYG | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 248, 347, 551 |
| Sse9I | AATT | 3 cut(s) | 289, 392, 480 |
| SsiI | CCGC | 5 cut(s) | 53, 59, 149, 160, 543 |
| StyD4I | CCNGG | 2 cut(s) | 109, 312 |
| TaaI | ACNGT | 2 cut(s) | 216, 612 |
| TaiI | ACGT | 2 cut(s) | 23, 413 |
| TaqI | TCGA | 2 cut(s) | 285, 332 |
| TasI | AATT | 3 cut(s) | 289, 392, 480 |
| TatI | WGTACW | 1 cut(s) | 339 |
| TauI | GCSGC | 1 cut(s) | 163 |
| TfiI | GAWTC | 2 cut(s) | 325, 506 |
| TscAI | CASTG | 1 cut(s) | 69 |
| TseI | GCWGC | 2 cut(s) | 86, 356 |
| TspDTI | ATGAA | 3 cut(s) | 232, 309, 418 |
| TspGWI | ACGGA | 1 cut(s) | 474 |
| TspRI | CASTG | 1 cut(s) | 69 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XmiI | GTMKAC | 1 cut(s) | 332 |
| XmnI | GAANNNNTTC | 2 cut(s) | 281, 396 |
| ZraI | GACGTC | 1 cut(s) | 411 |