Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012275

Physical Location & Seq

Genomic Coordinates Reverse (-)

6313527 .. 6315438

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACGAATCAAGACGACGCGTCTCCCAAGTATGCCCAACAACAAAAGCAACAACAATCCCCGCCGGTTGTTCCCACGGCTCCACCGGCTGCTGCAGCTGACGTGGAGAGCCAGTCGGAGGCGGCAACAGGACACGCCCGGGCGGCTGGGAGCGGGTTCGGGGTGGCAGGGATCATACGGCGGTGGAAGAGGAACGACTTGGTGAAGAAAGGCGGTGTGGCTTTGAGAGGACTTTCGTTGGTGTTGTCCCTGCTGGCTGCCATCATCATGGCGAGTAACAAGCACGGGGATTGGAAAGACTTCGATAAATATGAAGAATACAGATATTTGTTGGCAATAGCGATATTGGCGACGTTGTACTCCGGTGCACAAGCTTTTAAGGTTGCCACCGGGAAAGAGATGTTTCAGCGCCGGACGTCCGCCTTGGCCGACTTCATCGGAGATCAGATTATGGCATACCTTCTGATATCATCAGCATCTTCAGCGATTCCGTTAACAAACAGAATGAGGGAATCACAAGACAACATCTTTACAGACGCCTCGGCATCTGCCATTAGCATGGCTTTTCTCGCTTTCGTTACCCATGCTCTCTTGGCCCTCATTTCCGGACACAAGTTATCTTCTCAGTCTTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

213

Amino Acids

22.77

Weight (kDa)

9.3

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	68 - 193	9.7e-27	Casparian strip membrane protein domain
MARVEL	PF01284	73 - 199	6.6e-07	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38480
fragaria_vesca	FvH4_6g10520
malus_domestica	MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica	Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis	pycom04g14880 pycom12g17050
rosa_chinensis	RchiOBHm_Chr3g0461491
rosa_laevigata	RLG00000024930
rosa_multiflora	Rmu_sc0002677.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa	Rorug03G0051200.1
rosa_samantha	Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana	Rw3G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	7 cut(s)	62, 122, 143, 153, 181, 213, 420
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	2 cut(s)	416, 537
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	18
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	98, 374
AluI	AGCT	2 cut(s)	98, 374
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	2 cut(s)	426, 594
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	89, 92, 95, 257
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	3 cut(s)	139, 140, 391
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	4 cut(s)	76, 79, 107, 244
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	93, 194
BcnI	CCSGG	3 cut(s)	139, 140, 391
BcoDI	GTCTC	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	6 cut(s)	90, 93, 96, 123, 144, 258
BlsI	GCNGC	6 cut(s)	91, 94, 97, 124, 145, 259
Bme1390I	CCNGG	3 cut(s)	139, 140, 391
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	3 cut(s)	139, 140, 391
BmsI	GCATC	2 cut(s)	485, 554
BpuMI	CCSGG	3 cut(s)	139, 140, 391
BsaHI	GRCGYC	2 cut(s)	416, 537
BsaJI	CCNNGG	4 cut(s)	75, 138, 423, 540
BsaWI	WCCGGW	2 cut(s)	362, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	2 cut(s)	64, 85
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	605
BseDI	CCNNGG	4 cut(s)	75, 138, 423, 540
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	4 cut(s)	76, 79, 107, 244
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	428, 596
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	7 cut(s)	65, 86, 139, 363, 390, 412, 606
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	428, 596
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	171, 442
BspACI	CCGC	7 cut(s)	62, 122, 143, 153, 181, 213, 420
BspANI	GGCC	2 cut(s)	428, 596
BspCNI	CTCAG	1 cut(s)	637
BspEI	TCCGGA	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	153
BsrFI	RCCGGY	2 cut(s)	64, 85
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	2 cut(s)	64, 85
BssECI	CCNNGG	4 cut(s)	75, 138, 423, 540
BssMI	GATC	2 cut(s)	171, 442
BssNI	GRCGYC	2 cut(s)	416, 537
BssT1I	CCWWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	416, 537
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	2 cut(s)	174, 445
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	171, 442
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 95, 143, 347, 482, 569, 593
BstSCI	CCNGG	3 cut(s)	137, 138, 389
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	4 cut(s)	76, 79, 107, 244
BstXI	CCANNNNNNTGG	2 cut(s)	268, 559
BsuRI	GGCC	2 cut(s)	428, 596
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	2 cut(s)	64, 85
Cfr13I	GGNCC	1 cut(s)	595
Cfr9I	CCCGGG	1 cut(s)	138
CseI	GACGC	3 cut(s)	9, 26, 545
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	268, 559, 584
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	2 cut(s)	173, 444
DpnII	GATC	2 cut(s)	171, 442
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	271, 562, 587
FaiI	YATR	8 cut(s)	33, 176, 269, 312, 452, 457, 560, 585
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	267, 558, 583
FauI	CCCGC	2 cut(s)	69, 146
Fnu4HI	GCNGC	6 cut(s)	90, 93, 96, 123, 144, 258
Fsp4HI	GCNGC	6 cut(s)	90, 93, 96, 123, 144, 258
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	6 cut(s)	90, 93, 96, 123, 144, 258
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	428, 596
HapII	CCGG	7 cut(s)	65, 86, 139, 363, 390, 412, 606
HgaI	GACGC	3 cut(s)	9, 26, 545
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	2 cut(s)	416, 537
Hin1II	CATG	3 cut(s)	271, 562, 587
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	3 cut(s)	7, 487, 512
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	7 cut(s)	65, 86, 139, 363, 390, 412, 606
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	368, 495
Hpy188I	TCNGA	5 cut(s)	118, 440, 447, 465, 638
Hpy188III	TCNNGA	2 cut(s)	11, 606
Hpy8I	GTNNAC	2 cut(s)	368, 495
Hpy99I	CGWCG	2 cut(s)	20, 355
HpyAV	CCTTC	1 cut(s)	470
HpyCH4IV	ACGT	3 cut(s)	102, 353, 416
HpyCH4V	TGCA	2 cut(s)	95, 368
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 95, 143, 347, 482, 569, 593
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	3 cut(s)	102, 353, 416
Hsp92I	GRCGYC	2 cut(s)	416, 537
Hsp92II	CATG	3 cut(s)	271, 562, 587
HspAI	GCGC	1 cut(s)	409
Kpn2I	TCCGGA	1 cut(s)	605
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	171, 442
LmnI	GCTCC	2 cut(s)	85, 150
Lsp1109I	GCAGC	4 cut(s)	76, 79, 107, 244
LweI	GCATC	2 cut(s)	485, 554
MaeII	ACGT	3 cut(s)	102, 353, 416
MaeIII	GTNAC	2 cut(s)	275, 577
MalI	GATC	2 cut(s)	173, 444
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	171, 442
MboII	GAAGA	5 cut(s)	199, 217, 326, 471, 612
MhlI	GDGCHC	1 cut(s)	370
MluI	ACGCGT	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	112, 183, 221, 501, 550, 608
MroI	TCCGGA	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	378, 494
MslI	CAYNNNNRTG	2 cut(s)	266, 557
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	7 cut(s)	65, 86, 139, 363, 390, 412, 606
MspR9I	CCNGG	3 cut(s)	139, 140, 391
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	7 cut(s)	86, 95, 143, 347, 482, 569, 593
NciI	CCSGG	3 cut(s)	139, 140, 391
NdeII	GATC	2 cut(s)	171, 442
NlaIII	CATG	3 cut(s)	271, 562, 587
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	7, 487, 512
PkrI	GCNGC	6 cut(s)	91, 94, 97, 124, 145, 259
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	266, 557
SaqAI	TTAA	2 cut(s)	378, 494
SatI	GCNGC	6 cut(s)	90, 93, 96, 123, 144, 258
Sau3AI	GATC	2 cut(s)	171, 442
Sau96I	GGNCC	1 cut(s)	595
ScrFI	CCNGG	3 cut(s)	139, 140, 391
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	7 cut(s)	100, 105, 356, 376, 384, 419, 462
SfaNI	GCATC	2 cut(s)	485, 554
SfcI	CTRYAG	1 cut(s)	93
SmaI	CCCGGG	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	266, 557
SrfI	GCCCGGGC	1 cut(s)	140
SsiI	CCGC	7 cut(s)	62, 122, 143, 153, 181, 213, 420
StyD4I	CCNGG	3 cut(s)	137, 138, 389
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	3 cut(s)	105, 356, 419
TaqI	TCGA	1 cut(s)	303
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	2 cut(s)	125, 146
TfiI	GAWTC	3 cut(s)	7, 487, 512
Tru1I	TTAA	2 cut(s)	378, 494
Tru9I	TTAA	2 cut(s)	378, 494
TseI	GCWGC	4 cut(s)	89, 92, 95, 257
TspDTI	ATGAA	2 cut(s)	327, 424
TspGWI	ACGGA	1 cut(s)	480
TspMI	CCCGGG	1 cut(s)	138
VneI	GTGCAC	1 cut(s)	366
XmaI	CCCGGG	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.