Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012275

Physical Location & Seq

Genomic Coordinates Forward (+)

19327199 .. 19328537

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGACCAATCAAGACGACACGCCCCCGATGCAGGAAGAACGGGCAGCCGGATCACCGCCGCCAGTTGTTCCCACGGCTCCACCGATTAATGATGTGGAGAACCAGACCCCGTCCCACGCCAGGACTACTGGGACGGGGATTGGGGTCGGGGGGATCCTGCGGCGGTGGAAGAGGGAGGACTTGTTGAGGAGAGGCTCTCTGGCTCTGAGGGGACTTGCTTTGGTTTTTTCATTGCTGGCCTTCATCATCATGGCCAGCAACAAGCACGGCCACGGGAACAATTTCGACGAATATGAAGAATACAGGTATGTGTTGGCTATAGCTATTCTGGCGACGTTGTACACAGTGCTGCAATCATTCAGACATGCACGCGAGCTTTCCACCGGCAGAGAAATGTCTCAGCGACGGACGTCGGCGTTGGCTGACTTCATCGGCGATCAGATTATGGCCTATTTACTGATATCGTCGTCATCGTCGGCGATTCCGTTAACGAATAGAATGAGAGAATATCAAAACAACCTATTCACAGACGCCGTAGCATCCGCCATTAGCATGGCCTTTCTTGCTTTCGTTGCTCTTGCACTATCGGCTCTAATTTCCAGTTACAAATTATCGACTCAATCTTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

211

Amino Acids

23.1

Weight (kDa)

8.04

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38480
fragaria_vesca	FvH4_6g10520
malus_domestica	MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica	Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis	pycom04g14880 pycom12g17050
rosa_chinensis	RchiOBHm_Chr3g0461491
rosa_laevigata	RLG00000024930
rosa_multiflora	Rmu_sc0002677.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa	Rorug03G0051200.1
rosa_samantha	Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana	Rw3G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
AccII	CGCG	1 cut(s)	372
AciI	CCGC	5 cut(s)	56, 59, 160, 163, 543
AclWI	GGATC	3 cut(s)	58, 148, 161
AcoI	YGGCCR	2 cut(s)	252, 268
AcyI	GRCGYC	2 cut(s)	410, 531
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	31, 120
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	2 cut(s)	323, 376
AluI	AGCT	2 cut(s)	323, 376
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	3 cut(s)	58, 148, 161
AoxI	GGCC	5 cut(s)	237, 252, 268, 447, 555
ApeKI	GCWGC	2 cut(s)	44, 349
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	56, 336
BceAI	ACGGC	3 cut(s)	90, 283, 518
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	4 cut(s)	45, 59, 161, 350
BlsI	GCNGC	4 cut(s)	46, 60, 162, 351
Bme1390I	CCNGG	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	78, 155
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	18, 548
BmuI	ACTGGG	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BsaHI	GRCGYC	2 cut(s)	410, 531
BsaJI	CCNNGG	2 cut(s)	72, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 120
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	62, 133, 600
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	72, 271
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	31, 120
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	197, 413
BseNI	ACTGG	3 cut(s)	62, 133, 600
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	56, 336
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	5 cut(s)	239, 254, 270, 449, 557
BsiSI	CCGG	2 cut(s)	48, 384
BslFI	GGGAC	3 cut(s)	97, 145, 225
BslI	CCNNNNNNNGG	2 cut(s)	31, 120
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	3 cut(s)	97, 145, 225
BsnI	GGCC	5 cut(s)	239, 254, 270, 449, 557
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	50, 153, 436
BspACI	CCGC	5 cut(s)	56, 59, 160, 163, 543
BspANI	GGCC	5 cut(s)	239, 254, 270, 449, 557
BspCNI	CTCAG	2 cut(s)	198, 412
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	78, 155
BspPI	GGATC	3 cut(s)	58, 148, 161
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	62, 133, 600
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	72, 271
BssMI	GATC	3 cut(s)	50, 153, 436
BssNI	GRCGYC	2 cut(s)	410, 531
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	410, 531
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	237, 256, 370, 374
BstDEI	CTNAG	2 cut(s)	206, 399
BstDSI	CCRYGG	2 cut(s)	72, 271
BstF5I	GGATG	1 cut(s)	539
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	3 cut(s)	53, 156, 439
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	50, 153, 436
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 329, 563, 572, 587
BstNI	CCWGG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	56, 336
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	5 cut(s)	239, 254, 270, 449, 557
BtgI	CCRYGG	2 cut(s)	72, 271
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	237, 256, 370, 374
Cfr10I	RCCGGY	1 cut(s)	383
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	250, 365, 553
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	206, 399
DpnI	GATC	3 cut(s)	52, 155, 438
DpnII	GATC	3 cut(s)	50, 153, 436
EaeI	YGGCCR	2 cut(s)	252, 268
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	462
FaeI	CATG	3 cut(s)	253, 368, 556
FaiI	YATR	7 cut(s)	251, 294, 309, 320, 366, 446, 554
FaqI	GGGAC	3 cut(s)	97, 145, 225
FatI	CATG	3 cut(s)	249, 364, 552
Fnu4HI	GCNGC	4 cut(s)	45, 59, 161, 350
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	4 cut(s)	45, 59, 161, 350
GluI	GCNGC	4 cut(s)	45, 59, 161, 350
HaeIII	GGCC	5 cut(s)	239, 254, 270, 449, 557
HapII	CCGG	2 cut(s)	48, 384
HgaI	GACGC	1 cut(s)	539
Hin1I	GRCGYC	2 cut(s)	410, 531
Hin1II	CATG	3 cut(s)	253, 368, 556
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	2 cut(s)	481, 616
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	2 cut(s)	48, 384
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	342, 489
Hpy188I	TCNGA	4 cut(s)	207, 362, 441, 632
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	342, 489
Hpy99I	CGWCG	6 cut(s)	290, 337, 408, 415, 469, 478
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	335, 410
HpyCH4V	TGCA	4 cut(s)	31, 352, 368, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 329, 563, 572, 587
HpyF3I	CTNAG	2 cut(s)	206, 399
HpySE526I	ACGT	2 cut(s)	335, 410
Hsp92I	GRCGYC	2 cut(s)	410, 531
Hsp92II	CATG	3 cut(s)	253, 368, 556
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	50, 153, 436
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	2 cut(s)	56, 336
LweI	GCATC	2 cut(s)	18, 548
MaeII	ACGT	2 cut(s)	335, 410
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	3 cut(s)	52, 155, 438
MboI	GATC	3 cut(s)	50, 153, 436
MboII	GAAGA	3 cut(s)	47, 181, 308
MflI	RGATCY	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	280, 594, 608
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	5 cut(s)	165, 169, 180, 185, 201
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	2 cut(s)	87, 488
MslI	CAYNNNNRTG	2 cut(s)	248, 551
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	2 cut(s)	48, 384
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	5 cut(s)	28, 329, 563, 572, 587
NdeII	GATC	3 cut(s)	50, 153, 436
NlaIII	CATG	3 cut(s)	253, 368, 556
NlaIV	GGNNCC	2 cut(s)	78, 155
NspI	RCATGY	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	3 cut(s)	80, 470, 482
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	481
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	46, 60, 162, 351
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	78, 155
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	248, 551
SaqAI	TTAA	2 cut(s)	87, 488
SatI	GCNGC	4 cut(s)	45, 59, 161, 350
Sau3AI	GATC	3 cut(s)	50, 153, 436
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	6 cut(s)	308, 325, 338, 378, 413, 522
SfaNI	GCATC	2 cut(s)	18, 548
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	248, 551
Sse9I	AATT	3 cut(s)	280, 594, 608
SsiI	CCGC	5 cut(s)	56, 59, 160, 163, 543
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	338, 413
TaqI	TCGA	2 cut(s)	285, 614
TasI	AATT	3 cut(s)	280, 594, 608
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	61, 163
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	87, 488
Tru9I	TTAA	2 cut(s)	87, 488
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	2 cut(s)	44, 349
TspDTI	ATGAA	4 cut(s)	219, 232, 309, 418
TspGWI	ACGGA	2 cut(s)	421, 474
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	87
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.