Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012275

Physical Location & Seq

Genomic Coordinates Forward (+)

17661203 .. 17662473

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGAATCAAGACGATGCACCCCCGAAATTCGATGAACAAGAGGTCGGATCACCACCGCCGGTTGTCCCAACGCGTCCACCGGCTGCTGACGTGGAGAACCAGACCCCGTCCCAGGCCAGAACTGCTGGAACGGGGTTTGGGGTTGCGGGGATCCTACGGCGGTGGAAGAGGGAGGACTTGTTGAGGAAAGGGTCTCTGGCTCTGAGGGGACTTGCTCTGGTTTTTTCATTGCTGGCCTTCATCATCATGGCCAGCAACAAACACGGCCATGGGAAGAATTTCGATGAATATGAAGAATACAGGTATGTGTTGGCAATAGCGATTCTGGCGACGTTGTACACAGGGGCGCAAGCATTCCGGCATGCGCACGAGCTTTCCACCGGCACAGAAATGTTTCAGCGACGGACGTCGGCATTGGCGGACTTTATCGGCGATCAGATTATGGCCTATCTATTGATATCATCGTCATCTTCGGCGATTCCGTTGACGAATAACATGAGAAATTATCAAGACAATCTATTCACAGACGCCGCAGCATCTGCCATTAGCATGGCCTTTCTTGCTTTCGTTGCTCTTGCAATATCGGCTCTAATTTCCGGTCACAAATTAGCGACTCAATCTTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

211

Amino Acids

22.88

Weight (kDa)

6.97

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38480
fragaria_vesca	FvH4_6g10520
malus_domestica	MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica	Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis	pycom04g14880 pycom12g17050
rosa_chinensis	RchiOBHm_Chr3g0461491
rosa_laevigata	RLG00000024930
rosa_multiflora	Rmu_sc0002677.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa	Rorug03G0051200.1
rosa_samantha	Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana	Rw3G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
Acc16I	TGCGCA	1 cut(s)	369
AccII	CGCG	1 cut(s)	76
AciI	CCGC	5 cut(s)	59, 149, 163, 422, 534
AclWI	GGATC	3 cut(s)	58, 148, 161
AcoI	YGGCCR	2 cut(s)	252, 268
AcsI	RAATTY	2 cut(s)	29, 280
AcyI	GRCGYC	2 cut(s)	410, 531
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	74
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	58, 148, 161
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	6 cut(s)	117, 237, 252, 268, 447, 555
ApeKI	GCWGC	2 cut(s)	86, 536
ApoI	RAATTY	2 cut(s)	29, 280
Asp700I	GAANNNNTTC	2 cut(s)	281, 396
AspLEI	GCGC	2 cut(s)	352, 370
AsuHPI	GGTGA	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	73, 548
BceAI	ACGGC	2 cut(s)	176, 283
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	87, 534, 537
BlsI	GCNGC	3 cut(s)	88, 535, 538
Bme1390I	CCNGG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	7, 548
BoxI	GACNNNNGTC	1 cut(s)	409
BsaHI	GRCGYC	2 cut(s)	410, 531
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	114, 271
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	3 cut(s)	61, 82, 383
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	114, 271
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	73, 548
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	6 cut(s)	119, 239, 254, 270, 449, 557
BsiSI	CCGG	5 cut(s)	62, 83, 361, 384, 600
BslFI	GGGAC	3 cut(s)	53, 97, 225
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	3 cut(s)	53, 97, 225
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	6 cut(s)	119, 239, 254, 270, 449, 557
Bso31I	GGTCTC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	50, 153, 436
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	5 cut(s)	59, 149, 163, 422, 534
BspANI	GGCC	6 cut(s)	119, 239, 254, 270, 449, 557
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	3 cut(s)	58, 148, 161
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	3 cut(s)	61, 82, 383
BsrGI	TGTACA	1 cut(s)	339
BssAI	RCCGGY	3 cut(s)	61, 82, 383
BssECI	CCNNGG	2 cut(s)	114, 271
BssMI	GATC	3 cut(s)	50, 153, 436
BssNI	GRCGYC	2 cut(s)	410, 531
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	410, 531
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	237, 256, 354, 366
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	352, 370
BstKTI	GATC	3 cut(s)	53, 156, 439
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	50, 153, 436
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 329, 542, 563, 572, 587
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	73, 548
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	6 cut(s)	119, 239, 254, 270, 449, 557
BtgI	CCRYGG	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	237, 256, 354, 366
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	352, 370
Cfr10I	RCCGGY	3 cut(s)	61, 82, 383
CseI	GACGC	2 cut(s)	65, 539
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	5 cut(s)	250, 272, 365, 499, 553
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	3 cut(s)	52, 155, 438
DpnII	GATC	3 cut(s)	50, 153, 436
EaeI	YGGCCR	2 cut(s)	252, 268
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	5 cut(s)	253, 275, 368, 502, 556
FaiI	YATR	8 cut(s)	251, 273, 294, 309, 366, 446, 500, 554
FaqI	GGGAC	3 cut(s)	53, 97, 225
FatI	CATG	5 cut(s)	249, 271, 364, 498, 552
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	87, 534, 537
Fsp4HI	GCNGC	3 cut(s)	87, 534, 537
FspAI	RTGCGCAY	1 cut(s)	369
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	2 cut(s)	351, 369
GluI	GCNGC	3 cut(s)	87, 534, 537
HaeIII	GGCC	6 cut(s)	119, 239, 254, 270, 449, 557
HapII	CCGG	5 cut(s)	62, 83, 361, 384, 600
HgaI	GACGC	2 cut(s)	65, 539
HhaI	GCGC	2 cut(s)	352, 370
Hin1I	GRCGYC	2 cut(s)	410, 531
Hin1II	CATG	5 cut(s)	253, 275, 368, 502, 556
Hin6I	GCGC	2 cut(s)	350, 368
HinP1I	GCGC	2 cut(s)	350, 368
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	4 cut(s)	7, 325, 481, 616
HpaII	CCGG	5 cut(s)	62, 83, 361, 384, 600
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	80, 342, 489
Hpy188I	TCNGA	3 cut(s)	50, 207, 441
Hpy188III	TCNNGA	2 cut(s)	11, 512
Hpy8I	GTNNAC	3 cut(s)	80, 342, 489
Hpy99I	CGWCG	3 cut(s)	337, 408, 415
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	3 cut(s)	93, 335, 410
HpyCH4V	TGCA	2 cut(s)	20, 581
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 329, 542, 563, 572, 587
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	3 cut(s)	93, 335, 410
Hsp92I	GRCGYC	2 cut(s)	410, 531
Hsp92II	CATG	5 cut(s)	253, 275, 368, 502, 556
HspAI	GCGC	2 cut(s)	350, 368
Kzo9I	GATC	3 cut(s)	50, 153, 436
Lsp1109I	GCAGC	2 cut(s)	73, 548
LweI	GCATC	2 cut(s)	7, 548
MaeII	ACGT	3 cut(s)	93, 335, 410
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	3 cut(s)	52, 155, 438
MboI	GATC	3 cut(s)	50, 153, 436
MboII	GAAGA	5 cut(s)	16, 181, 289, 308, 465
MflI	RGATCY	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	5 cut(s)	29, 280, 505, 594, 608
MluI	ACGCGT	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	5 cut(s)	37, 165, 169, 180, 201
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	2 cut(s)	281, 396
MscI	TGGCCA	1 cut(s)	254
MslI	CAYNNNNRTG	4 cut(s)	248, 270, 392, 551
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	5 cut(s)	62, 83, 361, 384, 600
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	6 cut(s)	125, 329, 542, 563, 572, 587
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	50, 153, 436
NlaIII	CATG	5 cut(s)	253, 275, 368, 502, 556
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	2 cut(s)	281, 396
PfeI	GAWTC	3 cut(s)	7, 325, 481
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	88, 535, 538
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	4 cut(s)	248, 270, 392, 551
SatI	GCNGC	3 cut(s)	87, 534, 537
Sau3AI	GATC	3 cut(s)	50, 153, 436
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	6 cut(s)	48, 96, 308, 338, 378, 413
SfaNI	GCATC	2 cut(s)	7, 548
SmiMI	CAYNNNNRTG	4 cut(s)	248, 270, 392, 551
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	5 cut(s)	29, 280, 505, 594, 608
SsiI	CCGC	5 cut(s)	59, 149, 163, 422, 534
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	271
TaiI	ACGT	3 cut(s)	96, 338, 413
TaqI	TCGA	2 cut(s)	33, 285
TasI	AATT	5 cut(s)	29, 280, 505, 594, 608
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	3 cut(s)	7, 325, 481
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	2 cut(s)	86, 536
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	6 cut(s)	17, 51, 219, 232, 303, 309
TspGWI	ACGGA	2 cut(s)	421, 474
Tth111I	GACNNNGTC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	29, 280
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	281, 396
ZraI	GACGTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.