Rmu_sc0002677.1_g000004

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002677.1
OG0012275
Physical Location & Seq
Forward (+)
26704 .. 27907
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002677.1_g000004.1.cds

Sequence Viewer

Length: 648 bp
atgacgacgaatccagacgacgcgtcgcagaatcatgaccagcaacaacgaaaacaatccccgccggttgtccccacggctccaccggctgctgctgctgctgacgtggagagccagacggagccggcaccggcaccggcccaggcccgggcggctgggagcgggttcggggtggcagggatcatacggcggtggaagagagatgacttgttgaggaaaggctctctggcgttgagaggactgtccttggtcttctctttgctggctttcatcatcatggccagtaacaaacacggcgattggaaggacttcgataaatatgaagaatacaggtatctgttgggaatagcgatattggcgacgttgtacaccggcgcacaagctttcaaaaacgccacagggaaagagatgtttcagcgccggacgtcggcgctggccgacttcatcggagatcagattatggcataccttctgatatcatcatcatcttcggcgattccgttaacaaataggatgagggaatcacaagacaacatctttacagacgcctctgcatctgccattagtatggcttttctcgctttcgtttcccttgcactcttggccctcatttccggacacaagttatcttctcagtcttacatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

215

Amino Acids

23.24

Weight (kDa)

8.86

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38480
fragaria_vesca FvH4_6g10520
malus_domestica MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis pycom04g14880 pycom12g17050
rosa_chinensis RchiOBHm_Chr3g0461491
rosa_laevigata RLG00000024930
rosa_multiflora Rmu_sc0002677.1_g000004
rosa_roxburghii Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa Rorug03G0051200.1
rosa_samantha Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana Rw3G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 428
AccB1I GGYRCC 2 cut(s) 127, 133
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 614
AciI CCGC 4 cut(s) 62, 152, 162, 190
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 2 cut(s) 279, 435
AcyI GRCGYC 2 cut(s) 425, 546
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 147, 148, 427
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 388
AhdI GACNNNNNGTC 1 cut(s) 22
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 614
AoxI GGCC 5 cut(s) 138, 144, 279, 435, 603
ApeKI GCWGC 4 cut(s) 89, 92, 95, 98
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 3 cut(s) 377, 420, 433
AspS9I GGNCC 3 cut(s) 139, 145, 604
AsuC2I CCSGG 2 cut(s) 148, 149
AvaI CYCGRG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 2 cut(s) 127, 133
BbsI GAAGAC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 76, 79, 82, 85
BceAI ACGGC 3 cut(s) 93, 203, 310
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 2 cut(s) 148, 149
BfoI RGCGCY 2 cut(s) 421, 434
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 5 cut(s) 90, 93, 96, 99, 153
BlsI GCNGC 5 cut(s) 91, 94, 97, 100, 154
Bme1390I CCNGG 3 cut(s) 143, 148, 149
BmeRI GACNNNNNGTC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 139, 145, 604
BmiI GGNNCC 4 cut(s) 81, 123, 129, 135
BmrFI CCNGG 3 cut(s) 143, 148, 149
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 148, 149
BsaHI GRCGYC 2 cut(s) 425, 546
BsaJI CCNNGG 4 cut(s) 75, 141, 147, 246
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 148, 427
Bse118I RCCGGY 6 cut(s) 64, 85, 124, 130, 136, 371
Bse1I ACTGG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 4 cut(s) 75, 141, 147, 246
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 147, 148, 427
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 4 cut(s) 76, 79, 82, 85
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 5 cut(s) 140, 146, 281, 437, 605
BshNI GGYRCC 2 cut(s) 127, 133
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 9 cut(s) 65, 86, 125, 131, 137, 148, 372, 421, 615
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 147, 148, 427
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 5 cut(s) 140, 146, 281, 437, 605
BsoBI CYCGRG 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 614
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 2 cut(s) 180, 451
BspACI CCGC 4 cut(s) 62, 152, 162, 190
BspANI GGCC 5 cut(s) 140, 146, 281, 437, 605
BspCNI CTCAG 1 cut(s) 646
BspEI TCCGGA 1 cut(s) 614
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 81, 123, 129, 135
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 2 cut(s) 127, 133
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 6 cut(s) 64, 85, 124, 130, 136, 371
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 6 cut(s) 64, 85, 124, 130, 136, 371
BssECI CCNNGG 4 cut(s) 75, 141, 147, 246
BssMI GATC 2 cut(s) 180, 451
BssNI GRCGYC 2 cut(s) 425, 546
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 2 cut(s) 425, 546
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 126, 264, 435
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 2 cut(s) 421, 434
BstHHI GCGC 3 cut(s) 377, 420, 433
BstKTI GATC 2 cut(s) 183, 454
BstMBI GATC 2 cut(s) 180, 451
BstMWI GCNNNNNNNGC 7 cut(s) 86, 95, 98, 152, 356, 578, 602
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 3 cut(s) 141, 146, 147
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 4 cut(s) 76, 79, 82, 85
BstV2I GAAGAC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 568
BsuRI GGCC 5 cut(s) 140, 146, 281, 437, 605
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 126, 264, 435
CciI TCATGA 1 cut(s) 34
CfoI GCGC 3 cut(s) 377, 420, 433
Cfr10I RCCGGY 6 cut(s) 64, 85, 124, 130, 136, 371
Cfr13I GGNCC 3 cut(s) 139, 145, 604
Cfr9I CCCGGG 1 cut(s) 147
CseI GACGC 3 cut(s) 12, 29, 554
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 35, 277
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 633
DpnI GATC 2 cut(s) 182, 453
DpnII GATC 2 cut(s) 180, 451
DriI GACNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 279, 435
Eam1104I CTCTTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 246
Eco32I GATATC 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 38, 280
FaiI YATR 7 cut(s) 36, 185, 278, 321, 461, 466, 569
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 34, 276
FauI CCCGC 2 cut(s) 69, 155
Fnu4HI GCNGC 5 cut(s) 90, 93, 96, 99, 153
FokI GGATG 1 cut(s) 526
Fsp4HI GCNGC 5 cut(s) 90, 93, 96, 99, 153
GlaI GCGC 3 cut(s) 376, 419, 432
GluI GCNGC 5 cut(s) 90, 93, 96, 99, 153
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 2 cut(s) 421, 434
HaeIII GGCC 5 cut(s) 140, 146, 281, 437, 605
HapII CCGG 9 cut(s) 65, 86, 125, 131, 137, 148, 372, 421, 615
HgaI GACGC 3 cut(s) 12, 29, 554
HhaI GCGC 3 cut(s) 377, 420, 433
Hin1I GRCGYC 2 cut(s) 425, 546
Hin1II CATG 2 cut(s) 38, 280
Hin6I GCGC 3 cut(s) 375, 418, 431
HinP1I GCGC 3 cut(s) 375, 418, 431
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 4 cut(s) 10, 31, 496, 521
HpaI GTTAAC 1 cut(s) 504
HpaII CCGG 9 cut(s) 65, 86, 125, 131, 137, 148, 372, 421, 615
Hpy166II GTNNAC 2 cut(s) 369, 504
Hpy188I TCNGA 4 cut(s) 449, 456, 474, 647
Hpy188III TCNNGA 3 cut(s) 14, 35, 615
Hpy8I GTNNAC 2 cut(s) 369, 504
Hpy99I CGWCG 5 cut(s) 10, 23, 28, 364, 430
HpyAV CCTTC 2 cut(s) 298, 479
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 3 cut(s) 105, 362, 425
HpyCH4V TGCA 2 cut(s) 554, 596
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 95, 98, 152, 356, 578, 602
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 3 cut(s) 105, 362, 425
Hsp92I GRCGYC 2 cut(s) 425, 546
Hsp92II CATG 2 cut(s) 38, 280
HspAI GCGC 3 cut(s) 375, 418, 431
Kpn2I TCCGGA 1 cut(s) 614
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 2 cut(s) 180, 451
LmnI GCTCC 3 cut(s) 85, 121, 159
Lsp1109I GCAGC 4 cut(s) 76, 79, 82, 85
LweI GCATC 1 cut(s) 563
MaeII ACGT 3 cut(s) 105, 362, 425
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 182, 453
MbiI CCGCTC 1 cut(s) 162
MboI GATC 2 cut(s) 180, 451
MboII GAAGA 5 cut(s) 208, 244, 335, 480, 621
MlsI TGGCCA 1 cut(s) 281
MluI ACGCGT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 281
MnlI CCTC 5 cut(s) 207, 230, 510, 559, 617
Mox20I TGGCCA 1 cut(s) 281
MroI TCCGGA 1 cut(s) 614
MroNI GCCGGC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 281
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 2 cut(s) 275, 566
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 9 cut(s) 65, 86, 125, 131, 137, 148, 372, 421, 615
MspR9I CCNGG 3 cut(s) 143, 148, 149
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 7 cut(s) 86, 95, 98, 152, 356, 578, 602
NaeI GCCGGC 1 cut(s) 126
NciI CCSGG 2 cut(s) 148, 149
NdeII GATC 2 cut(s) 180, 451
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 2 cut(s) 38, 280
NlaIV GGNNCC 4 cut(s) 81, 123, 129, 135
PagI TCATGA 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PdiI GCCGGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 4 cut(s) 10, 31, 496, 521
PkrI GCNGC 5 cut(s) 91, 94, 97, 100, 154
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 4 cut(s) 81, 123, 129, 135
PspPI GGNCC 3 cut(s) 139, 145, 604
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 275, 566
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 5 cut(s) 90, 93, 96, 99, 153
Sau3AI GATC 2 cut(s) 180, 451
Sau96I GGNCC 3 cut(s) 139, 145, 604
ScrFI CCNGG 3 cut(s) 143, 148, 149
SetI ASST 6 cut(s) 108, 335, 365, 385, 428, 471
SfaNI GCATC 1 cut(s) 563
SgrAI CRCCGGYG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 275, 566
SrfI GCCCGGGC 1 cut(s) 149
SsiI CCGC 4 cut(s) 62, 152, 162, 190
StyD4I CCNGG 3 cut(s) 141, 146, 147
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 3 cut(s) 108, 365, 428
TaqI TCGA 1 cut(s) 312
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 4 cut(s) 10, 31, 496, 521
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TseI GCWGC 4 cut(s) 89, 92, 95, 98
TspDTI ATGAA 3 cut(s) 259, 336, 433
TspGWI ACGGA 2 cut(s) 134, 489
TspMI CCCGGG 1 cut(s) 147
XmaI CCCGGG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 308
ZraI GACGTC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.