Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

16136689 .. 16138886

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGCAATTGCTCATCTTCCTTCTTCTGTTCTCTTCCAGTTCTCAATGCTCGATTGGTGAAACCCAATTCAGAAACTTGTCGATGGAGGCTCAAACGGATTCAGCATTCAATCCTCAATTGCTTTTGGATTGATTCGAAAAACTCTCCCTTTCTCGGGCAATTCAGTTTTATAGAGAAACCGAGAGACAATTTCATCTGTTGCTTGAGTTCTTCACTATCTAATGAAGAAGATGTAGTGCATCAAACTGTGGGGAGTGATAGTGTAGAATTACCTGGAGAAAGTGATTTGGTTCGACTAGTAGGTGATAATGATCTGAGCATTACGGGTTCGCGAGGATTCAAGCAGTCGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTGTTAGTATACAATCAGCTTTGAGTTTAGGATTTATCTCTCAGCTTTGGGTTGACACTACTTCTTGGTTGGTTTTGGTGGTTGATGTTAAACCAAGCTTGCTATCTGGAGAATCTGAGAGATTTCTGCTCACAGACATTGTCCGGGTGGGTGATGTTGTCCTTGTTGATAATGAGACTGTCTTGGATACTGAATTCAAGATGGTTGGACTTGAAACACTGGTAGGTTACAGAGTAGTTACACCAGGAGGGAGAAACATTGGAAAGGTTCGAGGTTACTCATTCAACATTAACTCGGGAATAGTTGAATCGCTTGAGCTCGATTCCTTCGGGGTAACTATTATACCATCAAGCCTGGTGAGTACATACAGATTAGATGTCGAGGATATAATCGAGGTCTTACAAGATATAGTTGTGGTTCAAGAAGATGCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGCTCAGTTTGATAGTGAATACCCTGATGTTGAAGATCTTGAAAGTTCATCTGATAGAAGACGGCGAAGGAGAAACAATCGATCCAACCGAAAAAAGAGAGATTTGGATGATGAAGAATGGGACATATTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

328

Amino Acids

37.02

Weight (kDa)

5.01

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	350, 391
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	982
AclWI	GGATC	1 cut(s)	927
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	155, 156
AgsI	TTSAA	9 cut(s)	111, 343, 580, 596, 667, 689, 803, 884, 893
AhlI	ACTAGT	1 cut(s)	298
AjnI	CCWGG	3 cut(s)	274, 625, 735
AluBI	AGCT	5 cut(s)	401, 427, 480, 700, 815
AluI	AGCT	5 cut(s)	401, 427, 480, 700, 815
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	2 cut(s)	180, 551
AlwI	GGATC	1 cut(s)	927
Ama87I	CYCGRG	2 cut(s)	155, 676
ApeKI	GCWGC	1 cut(s)	812
ApoI	RAATTY	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	4 cut(s)	70, 317, 545, 751
AsuII	TTCGAA	1 cut(s)	137
AvaI	CYCGRG	2 cut(s)	155, 676
BanII	GRGCYC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	3 cut(s)	78, 577, 736
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	3 cut(s)	276, 627, 737
BciVI	GTATCC	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	180, 551
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	3 cut(s)	299, 819, 985
BfuI	GTATCC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	1 cut(s)	813
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	814
Bme1390I	CCNGG	4 cut(s)	276, 527, 627, 737
BmeT110I	CYCGRG	2 cut(s)	155, 676
BmrFI	CCNGG	4 cut(s)	276, 527, 627, 737
BmsI	GCATC	3 cut(s)	250, 799, 841
BpiI	GAAGAC	1 cut(s)	916
BpmI	CTGGAG	2 cut(s)	297, 510
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	226, 716
BpuMI	CCSGG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	931
BsaBI	GATNNNNATC	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 156
Bse1I	ACTGG	2 cut(s)	38, 606
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	276, 627, 737
BseCI	ATCGAT	1 cut(s)	931
BseGI	GGATG	2 cut(s)	856, 964
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	155, 156
BseMII	CTCAG	4 cut(s)	308, 437, 489, 869
BseNI	ACTGG	2 cut(s)	38, 606
BseXI	GCAGC	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	2 cut(s)	155, 676
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	855
BslI	CCNNNNNNNGG	2 cut(s)	155, 156
BsmAI	GTCTC	2 cut(s)	180, 551
BsmFI	GGGAC	1 cut(s)	855
BsmI	GAATGC	1 cut(s)	106
BsoBI	CYCGRG	2 cut(s)	155, 676
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	313, 359, 886, 932
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp68I	TCGCGA	1 cut(s)	334
BspACI	CCGC	1 cut(s)	982
BspCNI	CTCAG	4 cut(s)	309, 436, 490, 868
BspDI	ATCGAT	1 cut(s)	931
BspFNI	CGCG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	927
BspT104I	TTCGAA	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	38, 606
BssMI	GATC	4 cut(s)	313, 359, 886, 932
BssNAI	GTATAC	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	392
Bst2UI	CCWGG	3 cut(s)	276, 627, 737
Bst4CI	ACNGT	2 cut(s)	250, 562
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	6 cut(s)	317, 375, 423, 498, 837, 855
BstF5I	GGATG	2 cut(s)	856, 964
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	316, 362, 889, 935
BstMAI	GTCTC	2 cut(s)	180, 551
BstMBI	GATC	4 cut(s)	313, 359, 886, 932
BstNI	CCWGG	3 cut(s)	276, 627, 737
BstSCI	CCNGG	4 cut(s)	274, 525, 625, 735
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	824
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BstZ17I	GTATAC	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	562
BsuTUI	ATCGAT	1 cut(s)	931
BtsCI	GGATG	2 cut(s)	856, 964
BtsIMutI	CAGTG	1 cut(s)	599
BtuMI	TCGCGA	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	931
Csp6I	GTAC	1 cut(s)	744
CviJI	RGCY	7 cut(s)	91, 401, 427, 480, 700, 735, 815
CviKI_1	RGCY	7 cut(s)	91, 401, 427, 480, 700, 735, 815
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	6 cut(s)	317, 375, 423, 498, 837, 855
DpnI	GATC	4 cut(s)	315, 361, 888, 934
DpnII	GATC	4 cut(s)	313, 359, 886, 932
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	700
Eco88I	CYCGRG	2 cut(s)	155, 676
EcoICRI	GAGCTC	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	274, 625, 735
EcoT38I	GRGCYC	1 cut(s)	702
FaiI	YATR	7 cut(s)	173, 392, 725, 748, 770, 791, 977
FaqI	GGGAC	1 cut(s)	855
FblI	GTMKAC	2 cut(s)	350, 391
Fnu4HI	GCNGC	1 cut(s)	813
FokI	GGATG	2 cut(s)	863, 971
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	1 cut(s)	813
FspBI	CTAG	3 cut(s)	299, 819, 985
GluI	GCNGC	1 cut(s)	813
GsuI	CTGGAG	2 cut(s)	297, 510
HapII	CCGG	1 cut(s)	526
HincII	GTYRAC	3 cut(s)	351, 436, 834
HindII	GTYRAC	3 cut(s)	351, 436, 834
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	8 cut(s)	100, 134, 339, 364, 494, 689, 704, 843
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	4 cut(s)	70, 317, 545, 751
Hpy166II	GTNNAC	4 cut(s)	351, 392, 436, 834
Hpy188I	TCNGA	4 cut(s)	73, 318, 499, 904
Hpy188III	TCNNGA	7 cut(s)	333, 489, 580, 678, 803, 819, 890
Hpy8I	GTNNAC	4 cut(s)	351, 392, 436, 834
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	31, 718, 912
HpyCH4III	ACNGT	2 cut(s)	250, 562
HpyCH4V	TGCA	3 cut(s)	6, 241, 812
HpyF3I	CTNAG	6 cut(s)	317, 375, 423, 498, 837, 855
Kzo9I	GATC	4 cut(s)	313, 359, 886, 932
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	3 cut(s)	250, 799, 841
MaeI	CTAG	3 cut(s)	299, 819, 985
MaeIII	GTNAC	4 cut(s)	608, 619, 656, 715
MalI	GATC	4 cut(s)	315, 361, 888, 934
MboI	GATC	4 cut(s)	313, 359, 886, 932
MfeI	CAATTG	2 cut(s)	7, 118
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	7 cut(s)	7, 67, 118, 161, 190, 269, 575
MlyI	GAGTC	1 cut(s)	837
MmeI	TCCRAC	2 cut(s)	568, 960
MnlI	CCTC	8 cut(s)	81, 125, 329, 623, 647, 757, 769, 822
MseI	TTAA	2 cut(s)	471, 672
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	4 cut(s)	276, 527, 627, 737
MunI	CAATTG	2 cut(s)	7, 118
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	3 cut(s)	276, 627, 737
MvnI	CGCG	1 cut(s)	334
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	4 cut(s)	313, 359, 886, 932
NruI	TCGCGA	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	2 cut(s)	359, 937
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	7 cut(s)	100, 134, 339, 364, 494, 689, 704
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	814
PleI	GAGTC	1 cut(s)	837
PpsI	GAGTC	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	3 cut(s)	274, 625, 735
PspGI	CCWGG	3 cut(s)	274, 625, 735
PsuI	RGATCY	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	334
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	702
SalI	GTCGAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	471, 672
SatI	GCNGC	1 cut(s)	813
Sau3AI	GATC	4 cut(s)	313, 359, 886, 932
SchI	GAGTC	1 cut(s)	837
ScrFI	CCNGG	4 cut(s)	276, 527, 627, 737
SduI	GDGCHC	1 cut(s)	702
SfaNI	GCATC	3 cut(s)	250, 799, 841
SfuI	TTCGAA	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	205, 695
SmoI	CTYRAG	2 cut(s)	205, 695
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	7 cut(s)	7, 67, 118, 161, 190, 269, 575
SsiI	CCGC	1 cut(s)	982
SspMI	CTAG	3 cut(s)	299, 819, 985
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	4 cut(s)	274, 525, 625, 735
TaaI	ACNGT	2 cut(s)	250, 562
TasI	AATT	7 cut(s)	7, 67, 118, 161, 190, 269, 575
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	7 cut(s)	100, 134, 339, 364, 494, 689, 704
Tru1I	TTAA	2 cut(s)	471, 672
Tru9I	TTAA	2 cut(s)	471, 672
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	1 cut(s)	812
TspDTI	ATGAA	4 cut(s)	184, 240, 888, 978
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	606
Tth111I	GACNNNGTC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	575
XbaI	TCTAGA	1 cut(s)	818
XmiI	GTMKAC	2 cut(s)	350, 391
XspI	CTAG	3 cut(s)	299, 819, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.