Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Forward (+)

8417981 .. 8420808

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG104500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTGTGACTGTCTTCCCTCCAGCTCCCTCTACTTTGCTGTCACCAAATTTCAACAATTAGGGTTTCCCAAATCCAATCACAGACCACAAAGCCAACAAGATCCGCACTTTTCTACCCCAAATTGCTTGCACCCATCAAATTCCACTAATTCGAACTCCCCATCTCTTAGAAATGCGAGGTCTTTGTGCCTGAGCAGAAGGCCCAGTCAGAGCCCATCAGAGGCTTCTGGGTTTCCAACCCAATTAGGGTTTAAGGAGGAAAGCGAAAACCTTTTCGACCTGGAATCGAAACCAAGTGATGAAACGCAAAATGGGGTTGGACCCAGTGAAGAAGCCAATGCTACTTCATTGGGTTCAGATTTTCTGGAACCAAAGAGTAGTGAAGGCGAGGTTTTGGAGAAGGAGGAGGGATTGAAGCGCGTTGATGGCAATGTTGGGTTGAAGAAAGTGAGGCAGCTGATGAAGAGGTCCGGTATTCTAGCCAAGCAAGTGATCAATATTGAAAGTGCTCTCAGCTTGGGCTTTGTTTCACAGCTTTGGGTCAATACCACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGAAACTTGCTTTCAGGGGAGTGTGAACGTTTTCTTCTGGAGGATGTTATCCAGGTTGGTGATGTTGTGCTTGTGGAGGATGAGAGTGTGATTGAGAATGAATTCAAAATGGTTGGATTGGAAACATTGGTAGGATACGAAGTTGTAACACCAGGTCGACGAACTATCGGAAAGGTGCGGGGATATAGTTTTAACATCAATTCAGGGGCTGTTGAATCACTTGAGCTTGATTCATTTGGCATTGCAATTATCCCGTCAAGTTTGGTACGTGAAGATCAGAAGATGAAGTTTTACAAAATAACAGCAAAGGCTGAATTACTTCAGTTTCAATTAGAATTTCTTGCTTGCCTAGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

313

Amino Acids

34.71

Weight (kDa)

5.04

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	420
AciI	CCGC	2 cut(s)	104, 760
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	4 cut(s)	47, 139, 683, 917
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	1 cut(s)	849
AfiI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
AgsI	TTSAA	7 cut(s)	53, 415, 442, 503, 688, 797, 911
AjnI	CCWGG	3 cut(s)	279, 633, 733
AluBI	AGCT	5 cut(s)	24, 457, 516, 535, 808
AluI	AGCT	5 cut(s)	24, 457, 516, 535, 808
Alw21I	GWGCWC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	4 cut(s)	47, 139, 683, 917
Asp700I	GAANNNNTTC	3 cut(s)	612, 683, 900
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	201, 320, 468
AsuHPI	GGTGA	2 cut(s)	34, 653
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	320, 468
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	5 cut(s)	142, 169, 223, 419, 553
BciT130I	CCWGG	3 cut(s)	281, 635, 735
BciVI	GTATCC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	492
BfaI	CTAG	2 cut(s)	479, 932
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	281, 635, 735
Bme18I	GGWCC	2 cut(s)	320, 468
BmgT120I	GGNCC	3 cut(s)	201, 320, 468
BmiI	GGNNCC	2 cut(s)	322, 369
BmrFI	CCNGG	3 cut(s)	281, 635, 735
BmrI	ACTGGG	2 cut(s)	198, 318
BmuI	ACTGGG	2 cut(s)	198, 318
BpiI	GAAGAC	1 cut(s)	5
BpmI	CTGGAG	2 cut(s)	4, 641
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	824
BsaAI	YACGTR	1 cut(s)	851
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 246, 555
Bse1I	ACTGG	2 cut(s)	204, 324
Bse3DI	GCAATG	2 cut(s)	436, 822
BseBI	CCWGG	3 cut(s)	281, 635, 735
BseGI	GGATG	3 cut(s)	564, 631, 667
BseLI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BseMI	GCAATG	2 cut(s)	436, 822
BseMII	CTCAG	2 cut(s)	182, 526
BseNI	ACTGG	2 cut(s)	204, 324
BseRI	GAGGAG	2 cut(s)	419, 595
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BsnI	GGCC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	215, 511
Bsp143I	GATC	3 cut(s)	100, 492, 856
BspACI	CCGC	2 cut(s)	104, 760
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	183, 525
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	322, 369
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	436, 822
BsrI	ACTGG	2 cut(s)	204, 324
BssMI	GATC	3 cut(s)	100, 492, 856
Bst2UI	CCWGG	3 cut(s)	281, 635, 735
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	128, 928
BstDEI	CTNAG	3 cut(s)	167, 191, 512
BstF5I	GGATG	3 cut(s)	564, 631, 667
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	103, 495, 859
BstMBI	GATC	3 cut(s)	100, 492, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNI	CCWGG	3 cut(s)	281, 635, 735
BstSCI	CCNGG	3 cut(s)	279, 633, 733
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	564, 631, 667
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	128, 928
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	201, 320, 468
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	848
CviQI	GTAC	1 cut(s)	848
DdeI	CTNAG	3 cut(s)	167, 191, 512
DpnI	GATC	3 cut(s)	102, 494, 858
DpnII	GATC	3 cut(s)	100, 492, 856
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	320, 468
Eco57I	CTGAAG	1 cut(s)	887
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	3 cut(s)	279, 633, 733
EcoT38I	GRGCYC	1 cut(s)	215
FaiI	YATR	1 cut(s)	768
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	3 cut(s)	571, 638, 674
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	2 cut(s)	479, 932
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	2 cut(s)	4, 641
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HinfI	GANTC	3 cut(s)	284, 797, 812
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	34, 653
Hpy166II	GTNNAC	2 cut(s)	608, 740
Hpy188I	TCNGA	5 cut(s)	210, 220, 358, 752, 861
Hpy188III	TCNNGA	2 cut(s)	365, 620
Hpy8I	GTNNAC	2 cut(s)	608, 740
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	3 cut(s)	192, 377, 394
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	610, 850
HpyCH4V	TGCA	2 cut(s)	130, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	3 cut(s)	167, 191, 512
HpySE526I	ACGT	2 cut(s)	610, 850
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	100, 492, 856
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	2 cut(s)	479, 932
MaeII	ACGT	2 cut(s)	610, 850
MaeIII	GTNAC	3 cut(s)	5, 40, 727
MalI	GATC	3 cut(s)	102, 494, 858
MboI	GATC	3 cut(s)	100, 492, 856
MboII	GAAGA	7 cut(s)	5, 341, 454, 475, 608, 866, 874
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	215, 511
MmeI	TCCRAC	3 cut(s)	260, 298, 676
MroXI	GAANNNNTTC	3 cut(s)	612, 683, 900
MseI	TTAA	2 cut(s)	252, 774
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	281, 635, 735
MvaI	CCWGG	3 cut(s)	281, 635, 735
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeII	GATC	3 cut(s)	100, 492, 856
NlaIV	GGNNCC	2 cut(s)	322, 369
NmuCI	GTSAC	2 cut(s)	5, 40
NspV	TTCGAA	1 cut(s)	152
PdmI	GAANNNNTTC	3 cut(s)	612, 683, 900
PfeI	GAWTC	3 cut(s)	284, 797, 812
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	456
Ppu21I	YACGTR	1 cut(s)	851
Psp1406I	AACGTT	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	279, 633, 733
PspGI	CCWGG	3 cut(s)	279, 633, 733
PspN4I	GGNNCC	2 cut(s)	322, 369
PspPI	GGNCC	3 cut(s)	201, 320, 468
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	849
RsaNI	GTAC	1 cut(s)	848
SalI	GTCGAC	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	252, 774
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	100, 492, 856
Sau96I	GGNCC	3 cut(s)	201, 320, 468
ScrFI	CCNGG	3 cut(s)	281, 635, 735
SduI	GDGCHC	2 cut(s)	215, 511
SexAI	ACCWGGT	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	2 cut(s)	320, 468
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SsiI	CCGC	2 cut(s)	104, 760
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	479, 932
StyD4I	CCNGG	3 cut(s)	279, 633, 733
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	613, 853
TaqI	TCGA	4 cut(s)	152, 276, 287, 739
TfiI	GAWTC	3 cut(s)	284, 797, 812
Tru1I	TTAA	2 cut(s)	252, 774
Tru9I	TTAA	2 cut(s)	252, 774
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	5, 40
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	5, 40
TspDTI	ATGAA	6 cut(s)	315, 336, 476, 696, 804, 881
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	320, 468
XapI	RAATTY	4 cut(s)	47, 139, 683, 917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	3 cut(s)	612, 683, 900
XspI	CTAG	2 cut(s)	479, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.