Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Forward (+)

8267663 .. 8270460

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGTAACTGTCTTCCCTCCAGCTCCCTCTACTTTGCTGTCACCAAATTTCAACAATTAGGGTTTCCCAAATCCAATCACAGACCACAAAGCCAACAAGATCCTCACTTTTCTACCCCAAATTGCTTGCACCCATCAAATTCCACTAATTCGAACTCCCCATCTCTTAGAAATGCAAGGTCTTTGTGCCTGAGCCGAAGGCCCAGTCAGAGCCCATCAGAGGCTTCTGGGTTTCCAACCCAATTAGGGTTTAAGGAGGAAAGCGAAAACCTTTTCGACCTGGAATCGAAACCAAGTGATGAAACGCAAAATGGGGTTGGACCCAGTGAAGAAGCCAATGCTACTTCATTGGGTTCAGATTTTCTGGAACCAAAGAGTAGTGAAGGCGAGGTTTTGGAGAAGGAGGAGGGATTGAAGCGCGTTGATGGCAATGTTGGGTTGAAGAAAGTGAGGCAGCTGATGAAGAGGTCCGGTATTCTAGCCAAGCAAGTGATCAATATTGAAAGTGCTCTCAGCTTGGGCTTTGTTTCACAGCTTTGGGTCAATACCACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGAAACTTGCTTTCAGGGGAGTGTGAACGTTTTCTTCTGGAGGATGTTATCCAGGTTGGTGATGTTGTGCTTGTAGAGGATGAGAGTGTGATTGAGAATGAATTCAAAATGGTTGGATTGGAAACATTGGTAGGATATGAAGTTGTAACACCAGGTCGACGAACTATCGGAAAGGTCAGTCTTTTTATTGTTACAATGTCTCCACATCTTTTTACCTATTCCTTGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

271

Amino Acids

30.02

Weight (kDa)

5.28

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	420
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	47, 139, 683
AfiI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
AgsI	TTSAA	5 cut(s)	53, 415, 442, 503, 688
AjnI	CCWGG	3 cut(s)	279, 633, 733
AluBI	AGCT	4 cut(s)	24, 457, 516, 535
AluI	AGCT	4 cut(s)	24, 457, 516, 535
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	47, 139, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
Asp700I	GAANNNNTTC	2 cut(s)	612, 683
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	201, 320, 468
AsuHPI	GGTGA	2 cut(s)	34, 653
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	320, 468
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	5 cut(s)	142, 169, 223, 419, 553
BciT130I	CCWGG	3 cut(s)	281, 635, 735
BclI	TGATCA	2 cut(s)	492, 807
BcoDI	GTCTC	1 cut(s)	786
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	281, 635, 735
Bme18I	GGWCC	2 cut(s)	320, 468
BmgT120I	GGNCC	3 cut(s)	201, 320, 468
BmiI	GGNNCC	2 cut(s)	322, 369
BmrFI	CCNGG	3 cut(s)	281, 635, 735
BmrI	ACTGGG	2 cut(s)	198, 318
BmuI	ACTGGG	2 cut(s)	198, 318
BpiI	GAAGAC	1 cut(s)	5
BpmI	CTGGAG	2 cut(s)	4, 641
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 246, 555
Bse1I	ACTGG	2 cut(s)	204, 324
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	3 cut(s)	281, 635, 735
BseGI	GGATG	3 cut(s)	564, 631, 667
BseLI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	182, 526
BseNI	ACTGG	2 cut(s)	204, 324
BseRI	GAGGAG	2 cut(s)	419, 595
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BsmAI	GTCTC	1 cut(s)	786
BsnI	GGCC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	215, 511
Bsp143I	GATC	3 cut(s)	100, 492, 807
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	183, 525
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	322, 369
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	204, 324
BssMI	GATC	3 cut(s)	100, 492, 807
Bst2UI	CCWGG	3 cut(s)	281, 635, 735
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	167, 191, 512
BstF5I	GGATG	3 cut(s)	564, 631, 667
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	103, 495, 810
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	3 cut(s)	100, 492, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNI	CCWGG	3 cut(s)	281, 635, 735
BstSCI	CCNGG	3 cut(s)	279, 633, 733
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	564, 631, 667
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	201, 320, 468
CsiI	ACCWGGT	1 cut(s)	733
DdeI	CTNAG	3 cut(s)	167, 191, 512
DpnI	GATC	3 cut(s)	102, 494, 809
DpnII	GATC	3 cut(s)	100, 492, 807
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	320, 468
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	3 cut(s)	279, 633, 733
EcoT38I	GRGCYC	1 cut(s)	215
FaiI	YATR	1 cut(s)	720
FbaI	TGATCA	2 cut(s)	492, 807
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	3 cut(s)	571, 638, 674
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	2 cut(s)	4, 641
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	34, 653
Hpy166II	GTNNAC	2 cut(s)	608, 740
Hpy188I	TCNGA	4 cut(s)	210, 220, 358, 752
Hpy188III	TCNNGA	2 cut(s)	365, 620
Hpy8I	GTNNAC	2 cut(s)	608, 740
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	3 cut(s)	192, 377, 394
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	2 cut(s)	130, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	3 cut(s)	167, 191, 512
HpySE526I	ACGT	1 cut(s)	610
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	2 cut(s)	492, 807
Kzo9I	GATC	3 cut(s)	100, 492, 807
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	4 cut(s)	5, 40, 727, 772
MalI	GATC	3 cut(s)	102, 494, 809
MboI	GATC	3 cut(s)	100, 492, 807
MboII	GAAGA	5 cut(s)	5, 341, 454, 475, 608
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	215, 511
MluCI	AATT	7 cut(s)	47, 56, 121, 139, 148, 242, 683
MmeI	TCCRAC	3 cut(s)	260, 298, 676
MroXI	GAANNNNTTC	2 cut(s)	612, 683
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	281, 635, 735
MvaI	CCWGG	3 cut(s)	281, 635, 735
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeII	GATC	3 cut(s)	100, 492, 807
NlaIV	GGNNCC	2 cut(s)	322, 369
NmuCI	GTSAC	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	612, 683
PfeI	GAWTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	279, 633, 733
PspGI	CCWGG	3 cut(s)	279, 633, 733
PspN4I	GGNNCC	2 cut(s)	322, 369
PspPI	GGNCC	3 cut(s)	201, 320, 468
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	100, 492, 807
Sau96I	GGNCC	3 cut(s)	201, 320, 468
ScrFI	CCNGG	3 cut(s)	281, 635, 735
SduI	GDGCHC	2 cut(s)	215, 511
SexAI	ACCWGGT	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	2 cut(s)	320, 468
Sse9I	AATT	7 cut(s)	47, 56, 121, 139, 148, 242, 683
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	279, 633, 733
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	4 cut(s)	152, 276, 287, 739
TasI	AATT	7 cut(s)	47, 56, 121, 139, 148, 242, 683
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	5 cut(s)	315, 336, 476, 696, 735
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	320, 468
XapI	RAATTY	3 cut(s)	47, 139, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	2 cut(s)	612, 683
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.