FvH4_6g09660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007877
Physical Location & Seq
Forward (+)
5756159 .. 5759109
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09660.t2

Sequence Viewer

Length: 1092 bp
ATGTGTGACTGTCTTCCCTCCAGCTCCCTCTACTTTGCTCTCACCAAATTTCAACATTTAGGTTTTCCCAAATCCAGTCACAGACCACAAACCCAACAAATTCCTCACTTTTCTACCCAAAATTCCTTGAATTCGAACTCCACATCTCATAGAAATGCGACGACTTTGTGCCTCAGCAGAAGGGCCAGTCAGAGCCCACCAGAGGCTTCTGGGTTTCAAACCCAATTAGGGTTTAAGGAGGAAAGTGAAGACCTTTTCGACCTGGAATCGAAACCAAGGGATGAAAAGCCAAATGGGATTGGACCCAGTAAAGAAGCCAATGCTACTTTACTGGGTTCGGATTTTCAGGAGCCGAAGAGTGGTGAAGGTGAGGATATGAAAGAGGATGGATTGAAACGCATTGATGAAAATGTTGGGTTGAAGAAAGTGAGGCAGTTGATGAAGAGGTCGAGTATTCTAGCCAAGCAAGTGATCAGTATTGAAAGTGCTCTCAGCTTGGGATTTGTTTCACAGCTTTGGGTCAATACCACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGAAACTTGCTTTCAGGAGAGTGTGAACGTTTTCCTCTGGAGGATGTTTTCCAGGTTGGTGATGTTGTGCTTGTGGAGGATGAGAGTGTGATTCAGAATGATTTCAAAATGGTAGGATACGAAGTTGTAACACCAGGCCGACGAACTATTGGAAGGGTGCGGGGATATAGTTTTAACATCAATTCAGGGGCTGTTGAATCACTTGAGCTTGATTCATTTGGCATTGCACTTATCCCGTCAAGTTTGGTGAGTACATATGCTTTGTTTGTCGAGGATGTGCTTGAAGTTGTATCTGATGCTGTCATTGTTCATGAAGCTGCAGCATCTCGTATATACAGGCTGACTAAGGGTTTCTTGGACAACCAAAACGCTGCAACTTCCATAGATGACATTGAAGAGTATGCCGAATTTGAAAGACCTGTAGAATCTGATAAGCGCACTAGAAGAAGTACTGGTAACCAGAAGTTTCAATCTGGGAAAAGCAAGACTGACGATGATTGGGAACCAGAGCTCCCAATGGATTACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRC

Protein Analysis

364

Amino Acids

40.62

Weight (kDa)

4.94

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AciI CCGC 1 cut(s) 721
AclI AACGTT 1 cut(s) 589
AcsI RAATTY 5 cut(s) 47, 99, 121, 130, 968
AfaI GTAC 2 cut(s) 814, 1012
AfiI CCNNNNNNNGG 4 cut(s) 202, 228, 359, 534
AjnI CCWGG 3 cut(s) 261, 612, 694
AloI GAACNNNNNNTCC 2 cut(s) 1056, 1088
AluBI AGCT 6 cut(s) 24, 495, 514, 769, 878, 1072
AluI AGCT 6 cut(s) 24, 495, 514, 769, 878, 1072
Alw21I GWGCWC 2 cut(s) 490, 1074
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 2 cut(s) 183, 697
ApeKI GCWGC 3 cut(s) 878, 881, 932
ApoI RAATTY 5 cut(s) 47, 99, 121, 130, 968
Asp700I GAANNNNTTC 2 cut(s) 591, 662
AspLEI GCGC 1 cut(s) 999
AspS9I GGNCC 2 cut(s) 183, 302
AsuHPI GGTGA 5 cut(s) 34, 374, 380, 632, 820
AsuII TTCGAA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 197, 1074
BbsI GAAGAC 2 cut(s) 5, 255
Bbv12I GWGCWC 2 cut(s) 490, 1074
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 865, 893, 919
BccI CCATC 2 cut(s) 380, 532
BciT130I CCWGG 3 cut(s) 263, 614, 696
BciVI GTATCC 1 cut(s) 671
BclI TGATCA 1 cut(s) 471
BfaI CTAG 2 cut(s) 458, 1002
BfmI CTRYAG 2 cut(s) 879, 981
BfuI GTATCC 1 cut(s) 671
BisI GCNGC 3 cut(s) 879, 882, 933
BlsI GCNGC 3 cut(s) 880, 883, 934
BmcAI AGTACT 1 cut(s) 1012
Bme1390I CCNGG 3 cut(s) 263, 614, 696
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 183, 302
BmiI GGNNCC 3 cut(s) 304, 351, 1065
BmrFI CCNGG 3 cut(s) 263, 614, 696
BmrI ACTGGG 2 cut(s) 300, 341
BmsI GCATC 2 cut(s) 847, 893
BmuI ACTGGG 2 cut(s) 300, 341
BpiI GAAGAC 2 cut(s) 5, 255
BpmI CTGGAG 2 cut(s) 4, 620
Bpu10I CCTNAGC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 228, 359, 534
Bse1I ACTGG 5 cut(s) 75, 186, 306, 336, 1018
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 3 cut(s) 263, 614, 696
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 6 cut(s) 286, 391, 543, 610, 646, 841
BseLI CCNNNNNNNGG 4 cut(s) 202, 228, 359, 534
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 187, 505
BseNI ACTGG 5 cut(s) 75, 186, 306, 336, 1018
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 3 cut(s) 865, 893, 919
BshFI GGCC 2 cut(s) 185, 699
BsiHKAI GWGCWC 2 cut(s) 490, 1074
BslI CCNNNNNNNGG 4 cut(s) 202, 228, 359, 534
BsnI GGCC 2 cut(s) 185, 699
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 197, 490, 1074
Bsp143I GATC 1 cut(s) 471
BspACI CCGC 1 cut(s) 721
BspANI GGCC 2 cut(s) 185, 699
BspCNI CTCAG 2 cut(s) 186, 504
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 304, 351, 1065
BspMAI CTGCAG 1 cut(s) 883
BspT104I TTCGAA 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 5 cut(s) 75, 186, 306, 336, 1018
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 3 cut(s) 263, 614, 696
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 3 cut(s) 350, 437, 951
BstBI TTCGAA 1 cut(s) 134
BstDEI CTNAG 3 cut(s) 173, 491, 906
BstEII GGTNACC 1 cut(s) 1016
BstF5I GGATG 6 cut(s) 286, 391, 543, 610, 646, 841
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 1 cut(s) 474
BstMBI GATC 1 cut(s) 471
BstNI CCWGG 3 cut(s) 263, 614, 696
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 3 cut(s) 261, 612, 694
BstSFI CTRYAG 2 cut(s) 879, 981
BstV1I GCAGC 3 cut(s) 865, 893, 919
BstV2I GAAGAC 2 cut(s) 5, 255
BsuI GTATCC 1 cut(s) 671
BsuRI GGCC 2 cut(s) 185, 699
BtsCI GGATG 6 cut(s) 286, 391, 543, 610, 646, 841
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 871
CfoI GCGC 1 cut(s) 999
Cfr13I GGNCC 2 cut(s) 183, 302
Csp6I GTAC 2 cut(s) 813, 1011
CviAII CATG 1 cut(s) 872
CviQI GTAC 2 cut(s) 813, 1011
DdeI CTNAG 3 cut(s) 173, 491, 906
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
Eam1104I CTCTTC 3 cut(s) 350, 437, 951
EarI CTCTTC 3 cut(s) 350, 437, 951
Ecl136II GAGCTC 1 cut(s) 1072
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 2 cut(s) 197, 1074
Eco47I GGWCC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 1072
Eco91I GGTNACC 1 cut(s) 1016
EcoICRI GAGCTC 1 cut(s) 1072
EcoO65I GGTNACC 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 261, 612, 694
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 2 cut(s) 197, 1074
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 875
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FatI CATG 1 cut(s) 871
FauI CCCGC 1 cut(s) 714
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 879, 882, 933
FokI GGATG 6 cut(s) 293, 398, 550, 617, 653, 848
FriOI GRGCYC 2 cut(s) 197, 1074
Fsp4HI GCNGC 3 cut(s) 879, 882, 933
FspBI CTAG 2 cut(s) 458, 1002
GlaI GCGC 1 cut(s) 998
GluI GCNGC 3 cut(s) 879, 882, 933
GsuI CTGGAG 2 cut(s) 4, 620
HaeIII GGCC 2 cut(s) 185, 699
HhaI GCGC 1 cut(s) 999
Hin1II CATG 1 cut(s) 875
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HinfI GANTC 5 cut(s) 266, 652, 758, 773, 986
HphI GGTGA 5 cut(s) 34, 374, 380, 632, 820
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 6 cut(s) 192, 340, 657, 856, 991, 1091
Hpy188III TCNNGA 4 cut(s) 347, 576, 599, 872
Hpy8I GTNNAC 1 cut(s) 587
Hpy99I CGWCG 2 cut(s) 163, 705
HpyAV CCTTC 3 cut(s) 174, 359, 708
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 3 cut(s) 788, 881, 935
HpyF3I CTNAG 3 cut(s) 173, 491, 906
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 1 cut(s) 875
HspAI GCGC 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 1 cut(s) 471
LmnI GCTCC 3 cut(s) 29, 349, 1077
Lsp1109I GCAGC 3 cut(s) 865, 893, 919
LweI GCATC 2 cut(s) 847, 893
MaeI CTAG 2 cut(s) 458, 1002
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 4 cut(s) 5, 77, 688, 1016
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 7 cut(s) 5, 260, 367, 433, 454, 968, 1017
MhlI GDGCHC 3 cut(s) 197, 490, 1074
MluCI AATT 7 cut(s) 47, 99, 121, 130, 224, 742, 968
MroXI GAANNNNTTC 2 cut(s) 591, 662
MseI TTAA 2 cut(s) 234, 735
MslI CAYNNNNRTG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 263, 614, 696
MvaI CCWGG 3 cut(s) 263, 614, 696
NdeI CATATG 1 cut(s) 817
NdeII GATC 1 cut(s) 471
NlaIII CATG 1 cut(s) 875
NlaIV GGNNCC 3 cut(s) 304, 351, 1065
NmuCI GTSAC 2 cut(s) 5, 77
NspV TTCGAA 1 cut(s) 134
PagI TCATGA 1 cut(s) 871
PdmI GAANNNNTTC 2 cut(s) 591, 662
PfeI GAWTC 5 cut(s) 266, 652, 758, 773, 986
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 3 cut(s) 880, 883, 934
Psp124BI GAGCTC 1 cut(s) 1074
Psp1406I AACGTT 1 cut(s) 589
Psp6I CCWGG 3 cut(s) 261, 612, 694
PspEI GGTNACC 1 cut(s) 1016
PspGI CCWGG 3 cut(s) 261, 612, 694
PspN4I GGNNCC 3 cut(s) 304, 351, 1065
PspPI GGNCC 2 cut(s) 183, 302
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 752
RsaI GTAC 2 cut(s) 814, 1012
RsaNI GTAC 2 cut(s) 813, 1011
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 1074
SaqAI TTAA 2 cut(s) 234, 735
SatI GCNGC 3 cut(s) 879, 882, 933
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 2 cut(s) 183, 302
ScaI AGTACT 1 cut(s) 1012
ScrFI CCNGG 3 cut(s) 263, 614, 696
SduI GDGCHC 3 cut(s) 197, 490, 1074
SfaNI GCATC 2 cut(s) 847, 893
SfcI CTRYAG 2 cut(s) 879, 981
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 7 cut(s) 47, 99, 121, 130, 224, 742, 968
SsiI CCGC 1 cut(s) 721
SspMI CTAG 2 cut(s) 458, 1002
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 3 cut(s) 261, 612, 694
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 592
TaqI TCGA 5 cut(s) 134, 258, 269, 449, 831
TasI AATT 7 cut(s) 47, 99, 121, 130, 224, 742, 968
TatI WGTACW 2 cut(s) 812, 1010
TfiI GAWTC 5 cut(s) 266, 652, 758, 773, 986
Tru1I TTAA 2 cut(s) 234, 735
Tru9I TTAA 2 cut(s) 234, 735
TseFI GTSAC 2 cut(s) 5, 77
TseI GCWGC 3 cut(s) 878, 881, 932
Tsp45I GTSAC 2 cut(s) 5, 77
TspDTI ATGAA 7 cut(s) 297, 392, 420, 455, 765, 860, 888
Van91I CCANNNNNTGG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 5 cut(s) 47, 99, 121, 130, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmnI GAANNNNTTC 2 cut(s) 591, 662
XspI CTAG 2 cut(s) 458, 1002
ZrmI AGTACT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.