Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

26692527 .. 26695174

Gene Structure 2648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTGCGAGTGTCTTCCCTCCAGCCCCCTTTCTTTTCCGCTCACAAAATCTCCAAAATTAGGGTTTACCAGAACCAATTGGAGCCCCCAAATCCAACCGCACCCCAACTTTTACACCCCAAATTGTTCTAAGCTAGCAAATTTCGCGAATTCAGAAATCACAAATTCCAGAAATGGGAGGTCTTTGTTCCTCAGCAGAAGGGCCAGCGAGAATCCGAAAGTTGACTTTGGAATTCCGGCCGAGTTAGGGTTTAAGGAGAAAGGGGAAAACCTCTTCGACCTCGAAACAGAATCAATTGAATCAGTAACGCGAAATGGGATTGACCCCAGGGAGGAATCCAATGCTTCATTGGGTTCGGAAAATTTATTGGAATCGGAGGCCGGTTCGGGGGAGGATAAGCGAAATCGGAAGAGCAACGAGAGCGTAAAAGAGGAGAATCGGGTTCGAATTGAGGGTACGGATGGTGATGCGTTGGAGAAGGAGGAGAATTTGAAGCACATTGATGAAAAAGTTGGGCTGAGAAAAGGGAGACAGGTGATGAGGAGGTCCAATATTCTTGCGAAGCAAGTTATCAGTATCCGAAGTGCGCTCAGCTTGGGATTTGTCTCGCAGCTTTGGGTCAATACCAACTCTTGGATGGTAATGTTTGTAGAAGTAAGACGGAACTTGCTTTCGGGGGATTTCGAACGTTTTCTTCTCGATGATATTACCCAGGTTGGTGATGTTGTGCTTGTTGAGGACGAGAGTGTGATTGAAGACGAATTTAAGATTGTTGGACTGGAAACGTTGGTAGGATACCAAGTTATAACACCAGGCAGACGAACTATTGGAAAGGTGCGGGGGTACAGTTTTAACGTCAATTCAGGGGCTGTAGAATCCCTTGAATTTGATTCATTTGGAATTTCCTATATCCCATCAAGTTTGGTGAGTACCTATGCGTTGTTTGTTGAGGACGTGCTGGAAGTTGTCTCTGATGCCGTCATTGTGCATGAAGCTGCAGCTTCACGCATACACAGGCTGACCAAGGGTTTCTTGGACAGCCGAAATGTTGCAACCTCCATAGATGATCTCGATGAATATTCCGACTTTGAAAGACCCGTAAGATCGGATAAGCATACAAGAAGAAGAAATTTTGGTAACCAGAAGTTCGATTCCAGGAAAAGCAAGACCAATGATGATTGGGACCTCCCAATGGATTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

402

Amino Acids

45.27

Weight (kDa)

5.18

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccBSI	CCGCTC	1 cut(s)	40
AccII	CGCG	2 cut(s)	146, 310
AciI	CCGC	3 cut(s)	38, 98, 838
AclI	AACGTT	2 cut(s)	688, 785
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	3 cut(s)	457, 845, 931
AfiI	CCNNNNNNNGG	7 cut(s)	59, 174, 246, 331, 387, 633, 1192
AgsI	TTSAA	5 cut(s)	299, 493, 755, 884, 1091
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	4 cut(s)	326, 711, 811, 1154
AluBI	AGCT	5 cut(s)	133, 594, 613, 995, 1001
AluI	AGCT	5 cut(s)	133, 594, 613, 995, 1001
Alw26I	GTCTC	3 cut(s)	523, 610, 973
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	3 cut(s)	201, 237, 378
ApeKI	GCWGC	3 cut(s)	610, 995, 998
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	3 cut(s)	201, 546, 1183
AsuHPI	GGTGA	4 cut(s)	476, 547, 731, 937
AsuII	TTCGAA	2 cut(s)	445, 684
AsuNHI	GCTAGC	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	546, 1183
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	5, 762
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	622, 982, 1010
BccI	CCATC	3 cut(s)	455, 631, 922
BceAI	ACGGC	1 cut(s)	962
BciT130I	CCWGG	4 cut(s)	328, 713, 813, 1156
BciVI	GTATCC	2 cut(s)	587, 788
BcoDI	GTCTC	3 cut(s)	523, 610, 973
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	2 cut(s)	870, 996
BfuI	GTATCC	2 cut(s)	587, 788
BisI	GCNGC	3 cut(s)	611, 996, 999
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	3 cut(s)	612, 997, 1000
Bme1390I	CCNGG	4 cut(s)	328, 713, 813, 1156
Bme18I	GGWCC	2 cut(s)	546, 1183
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	3 cut(s)	201, 546, 1183
BmiI	GGNNCC	2 cut(s)	83, 1184
BmrFI	CCNGG	4 cut(s)	328, 713, 813, 1156
BmsI	GCATC	2 cut(s)	457, 964
BmtI	GCTAGC	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	5, 762
BpmI	CTGGAG	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	590
Bpu14I	TTCGAA	2 cut(s)	445, 684
BsaJI	CCNNGG	4 cut(s)	326, 327, 711, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	7 cut(s)	59, 174, 246, 331, 387, 633, 1192
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	328, 713, 813, 1156
BseDI	CCNNGG	4 cut(s)	326, 327, 711, 1023
BseGI	GGATG	2 cut(s)	466, 642
BseLI	CCNNNNNNNGG	7 cut(s)	59, 174, 246, 331, 387, 633, 1192
BseMII	CTCAG	3 cut(s)	205, 509, 604
BseNI	ACTGG	1 cut(s)	783
BseRI	GAGGAG	3 cut(s)	446, 497, 556
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	622, 982, 1010
Bsh1236I	CGCG	2 cut(s)	146, 310
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	203, 239, 380
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	236, 381
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	7 cut(s)	59, 174, 246, 331, 387, 633, 1192
BsmAI	GTCTC	3 cut(s)	523, 610, 973
BsmFI	GGGAC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	203, 239, 380
Bsp119I	TTCGAA	2 cut(s)	445, 684
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	1066, 1103
Bsp1720I	GCTNAGC	1 cut(s)	590
Bsp68I	TCGCGA	1 cut(s)	146
BspACI	CCGC	3 cut(s)	38, 98, 838
BspANI	GGCC	3 cut(s)	203, 239, 380
BspCNI	CTCAG	3 cut(s)	204, 510, 603
BspFNI	CGCG	2 cut(s)	146, 310
BspLI	GGNNCC	2 cut(s)	83, 1184
BspMAI	CTGCAG	1 cut(s)	1000
BspOI	GCTAGC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	404
BspT104I	TTCGAA	2 cut(s)	445, 684
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	326, 327, 711, 1023
BssMI	GATC	2 cut(s)	1066, 1103
BssT1I	CCWWGG	1 cut(s)	1023
Bst2UI	CCWGG	4 cut(s)	328, 713, 813, 1156
Bst4CI	ACNGT	1 cut(s)	848
Bst6I	CTCTTC	2 cut(s)	278, 404
BstBI	TTCGAA	2 cut(s)	445, 684
BstC8I	GCNNGC	2 cut(s)	135, 205
BstDEI	CTNAG	4 cut(s)	129, 191, 518, 590
BstEII	GGTNACC	1 cut(s)	1136
BstF5I	GGATG	2 cut(s)	466, 642
BstFNI	CGCG	2 cut(s)	146, 310
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	2 cut(s)	1069, 1106
BstMAI	GTCTC	3 cut(s)	523, 610, 973
BstMBI	GATC	2 cut(s)	1066, 1103
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 420
BstNI	CCWGG	4 cut(s)	328, 713, 813, 1156
BstPI	GGTNACC	1 cut(s)	1136
BstSCI	CCNGG	4 cut(s)	326, 711, 811, 1154
BstSFI	CTRYAG	2 cut(s)	870, 996
BstUI	CGCG	2 cut(s)	146, 310
BstV1I	GCAGC	3 cut(s)	622, 982, 1010
BstV2I	GAAGAC	2 cut(s)	5, 762
BstZI	CGGCCG	1 cut(s)	237
BsuI	GTATCC	2 cut(s)	587, 788
BsuRI	GGCC	3 cut(s)	203, 239, 380
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	2 cut(s)	466, 642
BtuMI	TCGCGA	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	135, 205
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	3 cut(s)	201, 546, 1183
Csp6I	GTAC	3 cut(s)	456, 844, 930
CviAII	CATG	1 cut(s)	989
CviQI	GTAC	3 cut(s)	456, 844, 930
DdeI	CTNAG	4 cut(s)	129, 191, 518, 590
DpnI	GATC	2 cut(s)	1068, 1105
DpnII	GATC	2 cut(s)	1066, 1103
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	278, 404
EarI	CTCTTC	2 cut(s)	278, 404
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	1023
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	546, 1183
Eco52I	CGGCCG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	1136
EcoO109I	RGGNCCY	1 cut(s)	1183
EcoO65I	GGTNACC	1 cut(s)	1136
EcoRI	GAATTC	2 cut(s)	148, 231
EcoRII	CCWGG	4 cut(s)	326, 711, 811, 1154
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	1 cut(s)	992
FaiI	YATR	7 cut(s)	806, 909, 936, 990, 1010, 1061, 1116
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	1 cut(s)	988
FauI	CCCGC	1 cut(s)	831
Fnu4HI	GCNGC	3 cut(s)	611, 996, 999
FokI	GGATG	2 cut(s)	473, 649
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	611, 996, 999
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	3 cut(s)	611, 996, 999
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	3 cut(s)	203, 239, 380
HapII	CCGG	2 cut(s)	236, 381
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	1 cut(s)	992
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	9 cut(s)	211, 290, 299, 335, 371, 436, 875, 890, 1151
HpaII	CCGG	2 cut(s)	236, 381
HphI	GGTGA	4 cut(s)	476, 547, 731, 937
Hpy166II	GTNNAC	2 cut(s)	66, 223
Hpy188III	TCNNGA	4 cut(s)	145, 168, 698, 1070
Hpy8I	GTNNAC	2 cut(s)	66, 223
HpyAV	CCTTC	2 cut(s)	192, 472
HpyCH4III	ACNGT	1 cut(s)	848
HpyCH4IV	ACGT	4 cut(s)	688, 785, 855, 954
HpyCH4V	TGCA	3 cut(s)	988, 998, 1052
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 420
HpyF3I	CTNAG	4 cut(s)	129, 191, 518, 590
HpySE526I	ACGT	4 cut(s)	688, 785, 855, 954
Hsp92II	CATG	1 cut(s)	992
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	1066, 1103
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	3 cut(s)	622, 982, 1010
LweI	GCATC	2 cut(s)	457, 964
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	4 cut(s)	688, 785, 855, 954
MaeIII	GTNAC	2 cut(s)	304, 1136
MalI	GATC	2 cut(s)	1068, 1105
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	2 cut(s)	1066, 1103
MboII	GAAGA	7 cut(s)	5, 265, 421, 686, 767, 1134, 1137
MfeI	CAATTG	2 cut(s)	76, 294
MhlI	GDGCHC	1 cut(s)	86
MmeI	TCCRAC	4 cut(s)	118, 453, 754, 1107
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	3 cut(s)	252, 765, 852
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	2 cut(s)	236, 381
MspR9I	CCNGG	4 cut(s)	328, 713, 813, 1156
MunI	CAATTG	2 cut(s)	76, 294
MvaI	CCWGG	4 cut(s)	328, 713, 813, 1156
MvnI	CGCG	2 cut(s)	146, 310
MwoI	GCNNNNNNNGC	2 cut(s)	143, 420
NdeII	GATC	2 cut(s)	1066, 1103
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	992
NlaIV	GGNNCC	2 cut(s)	83, 1184
NmeAIII	GCCGAG	1 cut(s)	265
NruI	TCGCGA	1 cut(s)	146
NspV	TTCGAA	2 cut(s)	445, 684
PasI	CCCWGGG	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	9 cut(s)	211, 290, 299, 335, 371, 436, 875, 890, 1151
PflMI	CCANNNNNTGG	1 cut(s)	633
PfoI	TCCNGGA	1 cut(s)	1154
PkrI	GCNGC	3 cut(s)	612, 997, 1000
PpuMI	RGGWCCY	1 cut(s)	1183
PsiI	TTATAA	1 cut(s)	806
Psp1406I	AACGTT	2 cut(s)	688, 785
Psp5II	RGGWCCY	1 cut(s)	1183
Psp6I	CCWGG	4 cut(s)	326, 711, 811, 1154
PspEI	GGTNACC	1 cut(s)	1136
PspGI	CCWGG	4 cut(s)	326, 711, 811, 1154
PspN4I	GGNNCC	2 cut(s)	83, 1184
PspPI	GGNCC	3 cut(s)	201, 546, 1183
PspPPI	RGGWCCY	1 cut(s)	1183
PstI	CTGCAG	1 cut(s)	1000
PstNI	CAGNNNCTG	1 cut(s)	869
RruI	TCGCGA	1 cut(s)	146
RsaI	GTAC	3 cut(s)	457, 845, 931
RsaNI	GTAC	3 cut(s)	456, 844, 930
RseI	CAYNNNNRTG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	252, 765, 852
SatI	GCNGC	3 cut(s)	611, 996, 999
Sau3AI	GATC	2 cut(s)	1066, 1103
Sau96I	GGNCC	3 cut(s)	201, 546, 1183
ScrFI	CCNGG	4 cut(s)	328, 713, 813, 1156
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	2 cut(s)	457, 964
SfcI	CTRYAG	2 cut(s)	870, 996
SfuI	TTCGAA	2 cut(s)	445, 684
SinI	GGWCC	2 cut(s)	546, 1183
SmiMI	CAYNNNNRTG	1 cut(s)	501
SsiI	CCGC	3 cut(s)	38, 98, 838
SspI	AATATT	2 cut(s)	553, 1079
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	326, 711, 811, 1154
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	1 cut(s)	848
TaiI	ACGT	4 cut(s)	691, 788, 858, 957
TaqI	TCGA	7 cut(s)	276, 282, 445, 684, 699, 1071, 1149
TfiI	GAWTC	9 cut(s)	211, 290, 299, 335, 371, 436, 875, 890, 1151
Tru1I	TTAA	3 cut(s)	252, 765, 852
Tru9I	TTAA	3 cut(s)	252, 765, 852
TseI	GCWGC	3 cut(s)	610, 995, 998
TspDTI	ATGAA	5 cut(s)	336, 519, 882, 1005, 1089
TspGWI	ACGGA	2 cut(s)	473, 676
Van91I	CCANNNNNTGG	1 cut(s)	633
VpaK11BI	GGWCC	2 cut(s)	546, 1183
XcmI	CCANNNNNNNNNTGG	3 cut(s)	346, 634, 1030
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.