Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446709.1

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1643

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ctggaatcgaaaccaagtgatgaaacgcaaaatggggttggacccagtaaagaagccaatgctacttcattgggttcagattttctggaaccaaagagtagtgaaggcgaggttttggagaaggaggagggattgaagcgcgttgatggcaatgttgggttgaagaaagtgaggcagctgatgaagaggtccggtattctagccaagcaagtgatcaatattgaaagtgctctcagcttgggctttgtttcacagctttgggtcaataccacttcttggatggtaatgtttgtagaagtgaggagaaacttgctttcaggggagtgtgaacgttttcttctggaggatgttatccaggttggtgatgttgtgcttgtagaggatgagagtgtgattgagaatgaattcaaaatggttggattggaaacattggtaggatatgaagttgtaacaccaggtcgacgaactatcggaaaggtgcggggatatagttttaacatcaattcaggggctgttgaatcacttgagcttgattcatttggcattgcaattatcccgtcaagtttggtgagtacatatgctttgtttgtcgaggatgtgcttgaagttgtatctgatgcgatcattgtgcatgaagctgcagcgtctcgcatatacaggctaaccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

4.74

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	481
AclI	AACGTT	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	6 cut(s)	136, 163, 224, 409, 518, 605
AjnI	CCWGG	2 cut(s)	354, 454
AluBI	AGCT	5 cut(s)	178, 237, 256, 529, 638
AluI	AGCT	5 cut(s)	178, 237, 256, 529, 638
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	175, 638, 641
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	2 cut(s)	333, 404
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	41, 189
AsuHPI	GGTGA	2 cut(s)	374, 580
AvaII	GGWCC	2 cut(s)	41, 189
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	187, 625, 653
BccI	CCATC	2 cut(s)	140, 274
BcgI	CGANNNNNNTGC	2 cut(s)	610, 644
BciT130I	CCWGG	2 cut(s)	356, 456
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	639
BisI	GCNGC	3 cut(s)	176, 639, 642
BlsI	GCNGC	3 cut(s)	177, 640, 643
Bme1390I	CCNGG	2 cut(s)	356, 456
Bme18I	GGWCC	2 cut(s)	41, 189
BmgT120I	GGNCC	2 cut(s)	41, 189
BmiI	GGNNCC	2 cut(s)	43, 90
BmrFI	CCNGG	2 cut(s)	356, 456
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	157, 543
BseBI	CCWGG	2 cut(s)	356, 456
BseGI	GGATG	4 cut(s)	285, 352, 388, 601
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	2 cut(s)	157, 543
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	140, 316
BseXI	GCAGC	3 cut(s)	187, 625, 653
Bsh1236I	CGCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	651
BsmBI	CGTCTC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	213, 621
BspACI	CCGC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	43, 90
BspMAI	CTGCAG	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	157, 543
BsrI	ACTGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	213, 621
Bst2UI	CCWGG	2 cut(s)	356, 456
Bst6I	CTCTTC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	4 cut(s)	285, 352, 388, 601
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	216, 624
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	2 cut(s)	213, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	2 cut(s)	356, 456
BstSCI	CCNGG	2 cut(s)	354, 454
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	187, 625, 653
BtsCI	GGATG	4 cut(s)	285, 352, 388, 601
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	41, 189
CseI	GACGC	1 cut(s)	633
CsiI	ACCWGGT	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	1 cut(s)	632
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	2 cut(s)	215, 623
DpnII	GATC	2 cut(s)	213, 621
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	41, 189
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	354, 454
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	1 cut(s)	635
FaiI	YATR	7 cut(s)	441, 489, 577, 579, 633, 653, 655
FatI	CATG	1 cut(s)	631
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	176, 639, 642
FokI	GGATG	4 cut(s)	292, 359, 395, 608
Fsp4HI	GCNGC	3 cut(s)	176, 639, 642
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	176, 639, 642
GsuI	CTGGAG	1 cut(s)	362
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	633
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	635
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HinfI	GANTC	3 cut(s)	5, 518, 533
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	374, 580
Hpy166II	GTNNAC	2 cut(s)	329, 461
Hpy188I	TCNGA	3 cut(s)	79, 473, 616
Hpy188III	TCNNGA	2 cut(s)	86, 341
Hpy8I	GTNNAC	2 cut(s)	329, 461
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	98, 115
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	548, 631, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	635
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 621
Lsp1109I	GCAGC	3 cut(s)	187, 625, 653
LweI	GCATC	1 cut(s)	607
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	215, 623
MboI	GATC	2 cut(s)	213, 621
MboII	GAAGA	3 cut(s)	175, 196, 329
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	3 cut(s)	404, 502, 549
MmeI	TCCRAC	2 cut(s)	19, 397
MnlI	CCTC	9 cut(s)	103, 118, 121, 165, 180, 294, 337, 373, 586
MroXI	GAANNNNTTC	2 cut(s)	333, 404
MseI	TTAA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	356, 456
MvaI	CCWGG	2 cut(s)	356, 456
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	2 cut(s)	213, 621
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	2 cut(s)	43, 90
PdmI	GAANNNNTTC	2 cut(s)	333, 404
PfeI	GAWTC	3 cut(s)	5, 518, 533
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	177, 640, 643
Psp1406I	AACGTT	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	354, 454
PspGI	CCWGG	2 cut(s)	354, 454
PspN4I	GGNNCC	2 cut(s)	43, 90
PspPI	GGNCC	2 cut(s)	41, 189
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SalI	GTCGAC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	176, 639, 642
Sau3AI	GATC	2 cut(s)	213, 621
Sau96I	GGNCC	2 cut(s)	41, 189
ScrFI	CCNGG	2 cut(s)	356, 456
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	2 cut(s)	41, 189
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	404, 502, 549
SsiI	CCGC	1 cut(s)	481
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	354, 454
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	8, 460, 591
TasI	AATT	3 cut(s)	404, 502, 549
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	5, 518, 533
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseI	GCWGC	3 cut(s)	175, 638, 641
TspDTI	ATGAA	7 cut(s)	36, 57, 197, 417, 456, 525, 648
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	41, 189
XapI	RAATTY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	460
XmnI	GAANNNNTTC	2 cut(s)	333, 404
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.