Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

41040660 .. 41043189

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTGTGACTGCCTTCCCTCCAGCTCCCTCTACTTTGCTGTCACCAAATTTCAACAATTAGGGTTTCCCAAATCCAATCACAGACCACAAAGCCAACAAGATCCTCACTTTTCTACCCCAAATTGCTTGCATCCATCAAATTCCACTAATTCAAACTCCCCATCTCTTAGAAATGCGAGGTCTTTGTGCCTGAGCAGAAGGCCCAGTCAGAGCCCATCAGAGGCTTCTGGGTTTCCAACCCAATTAGGGTTTAAGGAGGAAAGCGAAAACCTTTTCGACCTGGAATCGAAACCAAGTGATGAAACGCAAAATGGGGTTGGACCCAGTAAAGAAGCCAATGCTGCTTCATTGGGTTCAGATTTTCTGGAACCAAAGAGTAGTGAAGGCGAGGTTTTGGAGGAGGAGGAGGGATTGAAGCGCGCTGATGGCAATGTTGGGTTGAAGAAAGTGAGGCAGCTGATGAAGAGGTCCAGTATTCTAGCCAAGCAAGTGATCAATATTGAAAGTGCTCTCAGCTTGGGCTTTGTTTCACAGCTTTGGGTCAATACCACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGAAACTTGCTTTCAGGGGAGTGTGAACGTTTTCTTCTGGAGGATGTTATCCAGGTTGGTGATGTTGTGCTTGTGGAGGATGAGAGTGTGATTGAGAATGAATTCAAAATGGTTGGATTGGAAACATTGGTAGGATACGAAGTTGTAACACCAGGTCGACGAACTATCGGAAAGGTGCGGGGATATAGTTTTAACATCAATTCAGGGGCTGTTGAATCACTTGAGCTTGATTCATTTGGCATTGCAATTATCCCGTCAAGTTTGGTGAGTACATATGCTTTGTTTGTCGAGGATGTGCTTGAAGTTGTATCTGATGCCGTCATTGTGCATGAAGCTGCAGTGTCTCGCATATACAGGCTAACCAAGGGTTTCTTGGACAACCAAAACGCTGCAACTTCCATAGATGACATTGAAGAGTACTCTGACTTTGAAAGACCTGTAGAATCTGATAAGCGCTCAAGAAGAAGTTCTGGTAACCAGAAGTTCCGTTCTCGGAAAAGCAAGACCGATGATGAGTGGGAGCCGGAGCTCCCAATGGATTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

376

Amino Acids

41.85

Weight (kDa)

4.85

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	420
AciI	CCGC	1 cut(s)	760
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	47, 139, 683
AfaI	GTAC	2 cut(s)	853, 1001
AfeI	AGCGCT	1 cut(s)	1037
AfiI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
AjnI	CCWGG	3 cut(s)	279, 633, 733
AluBI	AGCT	7 cut(s)	24, 457, 516, 535, 808, 917, 1111
AluI	AGCT	7 cut(s)	24, 457, 516, 535, 808, 917, 1111
Alw21I	GWGCWC	2 cut(s)	511, 1113
Alw26I	GTCTC	1 cut(s)	930
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	791
Aor51HI	AGCGCT	1 cut(s)	1037
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	341, 454, 917, 971
ApoI	RAATTY	3 cut(s)	47, 139, 683
Asp700I	GAANNNNTTC	3 cut(s)	612, 683, 1048
AspLEI	GCGC	3 cut(s)	420, 422, 1038
AspS9I	GGNCC	3 cut(s)	201, 320, 468
AsuHPI	GGTGA	3 cut(s)	34, 653, 859
AvaII	GGWCC	2 cut(s)	320, 468
BanII	GRGCYC	2 cut(s)	215, 1113
Bbv12I	GWGCWC	2 cut(s)	511, 1113
BbvI	GCAGC	4 cut(s)	328, 466, 904, 958
BccI	CCATC	5 cut(s)	142, 169, 223, 419, 553
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	3 cut(s)	281, 635, 735
BciVI	GTATCC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	930
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	918, 1020
BfoI	RGCGCY	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	4 cut(s)	342, 455, 918, 972
BlsI	GCNGC	4 cut(s)	343, 456, 919, 973
BmcAI	AGTACT	1 cut(s)	1001
Bme1390I	CCNGG	3 cut(s)	281, 635, 735
Bme18I	GGWCC	2 cut(s)	320, 468
BmgT120I	GGNCC	3 cut(s)	201, 320, 468
BmiI	GGNNCC	3 cut(s)	322, 369, 1104
BmrFI	CCNGG	3 cut(s)	281, 635, 735
BmrI	ACTGGG	2 cut(s)	198, 318
BmsI	GCATC	2 cut(s)	139, 886
BmuI	ACTGGG	2 cut(s)	198, 318
BpmI	CTGGAG	2 cut(s)	4, 641
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	824, 1024
BsaJI	CCNNGG	1 cut(s)	945
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 246, 555
Bse1I	ACTGG	3 cut(s)	204, 324, 471
Bse3DI	GCAATG	2 cut(s)	436, 822
BseBI	CCWGG	3 cut(s)	281, 635, 735
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	5 cut(s)	130, 564, 631, 667, 880
BseLI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BseMI	GCAATG	2 cut(s)	436, 822
BseMII	CTCAG	2 cut(s)	182, 526
BseNI	ACTGG	3 cut(s)	204, 324, 471
BsePI	GCGCGC	1 cut(s)	418
BseRI	GAGGAG	4 cut(s)	413, 416, 419, 595
BseXI	GCAGC	4 cut(s)	328, 466, 904, 958
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	511, 1113
BsiSI	CCGG	1 cut(s)	1106
BslI	CCNNNNNNNGG	3 cut(s)	220, 246, 555
BsmAI	GTCTC	1 cut(s)	930
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	3 cut(s)	215, 511, 1113
Bsp143I	GATC	2 cut(s)	100, 492
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	183, 525
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	322, 369, 1104
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	436, 822
BsrI	ACTGG	3 cut(s)	204, 324, 471
BssECI	CCNNGG	1 cut(s)	945
BssHII	GCGCGC	1 cut(s)	418
BssMI	GATC	2 cut(s)	100, 492
BssT1I	CCWWGG	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	281, 635, 735
Bst6I	CTCTTC	2 cut(s)	458, 990
BstC8I	GCNNGC	2 cut(s)	128, 420
BstDEI	CTNAG	3 cut(s)	167, 191, 512
BstEII	GGTNACC	1 cut(s)	1055
BstF5I	GGATG	5 cut(s)	130, 564, 631, 667, 880
BstFNI	CGCG	1 cut(s)	420
BstH2I	RGCGCY	1 cut(s)	1039
BstHHI	GCGC	3 cut(s)	420, 422, 1038
BstKTI	GATC	2 cut(s)	103, 495
BstMAI	GTCTC	1 cut(s)	930
BstMBI	GATC	2 cut(s)	100, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 426
BstNI	CCWGG	3 cut(s)	281, 635, 735
BstPI	GGTNACC	1 cut(s)	1055
BstSCI	CCNGG	3 cut(s)	279, 633, 733
BstSFI	CTRYAG	2 cut(s)	918, 1020
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	328, 466, 904, 958
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	5 cut(s)	130, 564, 631, 667, 880
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	1 cut(s)	927
Cac8I	GCNNGC	2 cut(s)	128, 420
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	3 cut(s)	420, 422, 1038
Cfr13I	GGNCC	3 cut(s)	201, 320, 468
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	852, 1000
CviAII	CATG	1 cut(s)	911
CviQI	GTAC	2 cut(s)	852, 1000
DdeI	CTNAG	3 cut(s)	167, 191, 512
DpnI	GATC	2 cut(s)	102, 494
DpnII	GATC	2 cut(s)	100, 492
Eam1104I	CTCTTC	2 cut(s)	458, 990
EarI	CTCTTC	2 cut(s)	458, 990
Ecl136II	GAGCTC	1 cut(s)	1111
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	2 cut(s)	215, 1113
Eco47I	GGWCC	2 cut(s)	320, 468
Eco47III	AGCGCT	1 cut(s)	1037
Eco53kI	GAGCTC	1 cut(s)	1111
Eco91I	GGTNACC	1 cut(s)	1055
EcoICRI	GAGCTC	1 cut(s)	1111
EcoO65I	GGTNACC	1 cut(s)	1055
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	3 cut(s)	279, 633, 733
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	2 cut(s)	215, 1113
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	1 cut(s)	914
FaiI	YATR	7 cut(s)	768, 856, 858, 912, 932, 934, 983
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FatI	CATG	1 cut(s)	910
FauI	CCCGC	1 cut(s)	753
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	4 cut(s)	342, 455, 918, 972
FokI	GGATG	5 cut(s)	117, 571, 638, 674, 887
FriOI	GRGCYC	2 cut(s)	215, 1113
Fsp4HI	GCNGC	4 cut(s)	342, 455, 918, 972
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	3 cut(s)	419, 421, 1037
GluI	GCNGC	4 cut(s)	342, 455, 918, 972
GsuI	CTGGAG	2 cut(s)	4, 641
HaeII	RGCGCY	1 cut(s)	1039
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	1106
HhaI	GCGC	3 cut(s)	420, 422, 1038
Hin1II	CATG	1 cut(s)	914
Hin6I	GCGC	3 cut(s)	418, 420, 1036
HinP1I	GCGC	3 cut(s)	418, 420, 1036
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HinfI	GANTC	4 cut(s)	284, 797, 812, 1025
HpaII	CCGG	1 cut(s)	1106
HphI	GGTGA	3 cut(s)	34, 653, 859
Hpy166II	GTNNAC	2 cut(s)	608, 740
Hpy188I	TCNGA	9 cut(s)	210, 220, 358, 752, 895, 1006, 1030, 1077, 1130
Hpy188III	TCNNGA	3 cut(s)	365, 620, 1041
Hpy8I	GTNNAC	2 cut(s)	608, 740
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	3 cut(s)	23, 192, 377
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	130, 827, 910, 920, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 426
HpyF3I	CTNAG	3 cut(s)	167, 191, 512
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	1 cut(s)	914
HspAI	GCGC	3 cut(s)	418, 420, 1036
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	100, 492
LmnI	GCTCC	4 cut(s)	29, 1102, 1108, 1116
Lsp1109I	GCAGC	4 cut(s)	328, 466, 904, 958
LweI	GCATC	2 cut(s)	139, 886
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	4 cut(s)	5, 40, 727, 1055
MalI	GATC	2 cut(s)	102, 494
MboI	GATC	2 cut(s)	100, 492
MboII	GAAGA	5 cut(s)	454, 475, 608, 1007, 1056
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	215, 511, 1113
MluCI	AATT	9 cut(s)	47, 56, 121, 139, 148, 242, 683, 781, 828
MmeI	TCCRAC	3 cut(s)	260, 298, 676
MroXI	GAANNNNTTC	3 cut(s)	612, 683, 1048
MseI	TTAA	2 cut(s)	252, 774
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	1106
MspR9I	CCNGG	3 cut(s)	281, 635, 735
MvaI	CCWGG	3 cut(s)	281, 635, 735
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	2 cut(s)	341, 426
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	2 cut(s)	100, 492
NlaIII	CATG	1 cut(s)	914
NlaIV	GGNNCC	3 cut(s)	322, 369, 1104
NmuCI	GTSAC	2 cut(s)	5, 40
PauI	GCGCGC	1 cut(s)	418
PdmI	GAANNNNTTC	3 cut(s)	612, 683, 1048
PfeI	GAWTC	4 cut(s)	284, 797, 812, 1025
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	4 cut(s)	343, 456, 919, 973
Psp124BI	GAGCTC	1 cut(s)	1113
Psp1406I	AACGTT	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	279, 633, 733
PspEI	GGTNACC	1 cut(s)	1055
PspGI	CCWGG	3 cut(s)	279, 633, 733
PspN4I	GGNNCC	3 cut(s)	322, 369, 1104
PspPI	GGNCC	3 cut(s)	201, 320, 468
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	100
PteI	GCGCGC	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	853, 1001
RsaNI	GTAC	2 cut(s)	852, 1000
SacI	GAGCTC	1 cut(s)	1113
SalI	GTCGAC	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	252, 774
SatI	GCNGC	4 cut(s)	342, 455, 918, 972
Sau3AI	GATC	2 cut(s)	100, 492
Sau96I	GGNCC	3 cut(s)	201, 320, 468
ScaI	AGTACT	1 cut(s)	1001
ScrFI	CCNGG	3 cut(s)	281, 635, 735
SduI	GDGCHC	3 cut(s)	215, 511, 1113
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	139, 886
SfcI	CTRYAG	2 cut(s)	918, 1020
SinI	GGWCC	2 cut(s)	320, 468
SmlI	CTYRAG	2 cut(s)	803, 1039
SmoI	CTYRAG	2 cut(s)	803, 1039
Sse9I	AATT	9 cut(s)	47, 56, 121, 139, 148, 242, 683, 781, 828
SsiI	CCGC	1 cut(s)	760
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	1113
StyD4I	CCNGG	3 cut(s)	279, 633, 733
StyI	CCWWGG	1 cut(s)	945
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	4 cut(s)	276, 287, 739, 870
TaqII	GACCGA	1 cut(s)	1103
TasI	AATT	9 cut(s)	47, 56, 121, 139, 148, 242, 683, 781, 828
TatI	WGTACW	2 cut(s)	851, 999
TfiI	GAWTC	4 cut(s)	284, 797, 812, 1025
Tru1I	TTAA	2 cut(s)	252, 774
Tru9I	TTAA	2 cut(s)	252, 774
TscAI	CASTG	1 cut(s)	927
TseFI	GTSAC	2 cut(s)	5, 40
TseI	GCWGC	4 cut(s)	341, 454, 917, 971
Tsp45I	GTSAC	2 cut(s)	5, 40
TspDTI	ATGAA	6 cut(s)	315, 336, 476, 696, 804, 927
TspGWI	ACGGA	1 cut(s)	1058
TspRI	CASTG	1 cut(s)	927
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	320, 468
XapI	RAATTY	3 cut(s)	47, 139, 683
XcmI	CCANNNNNNNNNTGG	2 cut(s)	556, 952
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	3 cut(s)	612, 683, 1048
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.