Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

27049207 .. 27051723

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTGTGACTGTCTTCCCTCCAGCCCCCTATCCTTTACTGTCACAAAATTTCGACAATTAGGGTTTTGCAGAACCAATCAGAGACCCCAGAGCCCACCACATCCTTACTTTTACATCCCAAATTGTTTGAAGCTATCAAATTTCACAAATTTAGACATAACAGGTCTTAGAAATGGTAGGTCTTTGGTCCTCTGCAGAAGAGCGAGCGAGAATCCCTCAGAGGATTTTGGGTTTGGCGCTGAATTAGGGTTCAAGGAGAAAAGGGAAAACCTTTTCGACCTCGAAGCAAAACCAAGCGATGCGGCAAAGAAAAATGGGATTGATCCCACTAAGGAAGGTAATGCTTCATTGGGTTCAGATTTTCTGCAATCGGAGGGTGGTCTGGGGGATGAGAAGCAAAGTACAAAGACTGATGAGAGCTTAGAAAATGAGAATTGGGTTCGAATGGAGGGTGCAGATGGTGATGGGCTAGAAAATGAGGAGGGGTTGAAGCACACTGATGGAAAAGTTGGGCTGAGAAAAGGGAGGCAGGTGATGAGGAGGTCCAATATTCTTGCAAAGCAAGTGATCAGCATCCGAAGTGCTCTCAGCTTGGGATTTGTTTCACAGCTTTGGGTCAACACCAACTCTTGGATGGTAATGTTTGTAGAAGTGAAGCGAAACTTGCTTTCTGGGGAATCTGAACGTTTTCTCCTCGATGATATTACTCAGGTTGGTGATGTTGTGCTTGTGGAGGACGAGAGTGTGGTTGAGAATGAATTTAAAATTGCTGGACTGGAAACATTGGTAGGATACCAAGTTGTAACACCGGGTCGACGAACTATGGGGAAGGTTCGAGGATACAGTTTTAACATCAATTCAGGGGCTGTGGAATCACTTGAGCTTGATTCATTTGGGATTTCCATTATCCCATCAAGTTTGGTGAGTACTTATGCTTTGTTTGTTGAAGATGTGCTGGAAGTTGTATCTGATGCTGTCATTGTGCATGAAGCTGCAGCTTCGCGCATACACAGGCTGACCAAGGGTTTCTTGGACAGCCAAAATGTTGCGACTTCCCTCGATGAGCTTGACGAATATTCCGATTTCGAAAGACCTGCACGATCGGACAAGCATACAAGAAGAAGCTTTGGCAACCAGAAGTTCAATTCCAGGAAAAGCAAGACCAATGATGATTGGGACCTCCCAATGGATTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

400

Amino Acids

44.56

Weight (kDa)

5.13

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	2 cut(s)	520, 1102
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	1 cut(s)	1003
AciI	CCGC	1 cut(s)	302
AclI	AACGTT	1 cut(s)	685
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	4 cut(s)	47, 139, 148, 758
AfaI	GTAC	2 cut(s)	403, 928
AfiI	CCNNNNNNNGG	2 cut(s)	630, 1186
AgsI	TTSAA	5 cut(s)	130, 253, 490, 947, 1144
AjnI	CCWGG	1 cut(s)	1148
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	9 cut(s)	133, 420, 591, 610, 883, 992, 998, 1066, 1125
AluI	AGCT	9 cut(s)	133, 420, 591, 610, 883, 992, 998, 1066, 1125
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	866
ApeKI	GCWGC	2 cut(s)	992, 995
ApoI	RAATTY	4 cut(s)	47, 139, 148, 758
Asp700I	GAANNNNTTC	1 cut(s)	687
AspLEI	GCGC	2 cut(s)	239, 1005
AspS9I	GGNCC	3 cut(s)	187, 543, 1177
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	4 cut(s)	473, 544, 728, 934
AsuII	TTCGAA	2 cut(s)	442, 1086
AvaII	GGWCC	3 cut(s)	187, 543, 1177
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	979, 1007
BccI	CCATC	5 cut(s)	452, 458, 494, 628, 919
BcgI	CGANNNNNNTGC	2 cut(s)	1076, 1110
BciT130I	CCWGG	1 cut(s)	1150
BciVI	GTATCC	2 cut(s)	785, 833
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	2 cut(s)	193, 993
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	2 cut(s)	520, 1102
BfuI	GTATCC	2 cut(s)	785, 833
BisI	GCNGC	3 cut(s)	303, 993, 996
BlsI	GCNGC	3 cut(s)	304, 994, 997
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	2 cut(s)	810, 1150
Bme18I	GGWCC	3 cut(s)	187, 543, 1177
BmgT120I	GGNCC	3 cut(s)	187, 543, 1177
BmiI	GGNNCC	1 cut(s)	1178
BmrFI	CCNGG	2 cut(s)	810, 1150
BmsI	GCATC	3 cut(s)	289, 582, 961
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	4
Bpu14I	TTCGAA	2 cut(s)	442, 1086
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	1 cut(s)	810
BsaBI	GATNNNNATC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	1020
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 1186
Bse1I	ACTGG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	1150
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	5 cut(s)	100, 114, 394, 573, 639
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	630, 1186
BseMII	CTCAG	4 cut(s)	231, 506, 601, 722
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	3 cut(s)	494, 553, 683
BseXI	GCAGC	2 cut(s)	979, 1007
BsgI	GTGCAG	2 cut(s)	474, 1080
Bsh1236I	CGCG	1 cut(s)	1003
Bsh1285I	CGRYCG	1 cut(s)	1103
BsiEI	CGRYCG	1 cut(s)	1103
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	1 cut(s)	1190
BslI	CCNNNNNNNGG	2 cut(s)	630, 1186
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	1190
Bso31I	GGTCTC	1 cut(s)	76
Bsp119I	TTCGAA	2 cut(s)	442, 1086
Bsp1286I	GDGCHC	2 cut(s)	95, 586
Bsp143I	GATC	3 cut(s)	322, 567, 1100
BspACI	CCGC	1 cut(s)	302
BspCNI	CTCAG	4 cut(s)	230, 507, 600, 721
BspFNI	CGCG	1 cut(s)	1003
BspLI	GGNNCC	1 cut(s)	1178
BspMAI	CTGCAG	2 cut(s)	197, 997
BspMI	ACCTGC	2 cut(s)	520, 1102
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	193
BspT104I	TTCGAA	2 cut(s)	442, 1086
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	3 cut(s)	322, 567, 1100
BssT1I	CCWWGG	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	1150
Bst4CI	ACNGT	3 cut(s)	11, 40, 845
Bst6I	CTCTTC	1 cut(s)	193
BstBI	TTCGAA	2 cut(s)	442, 1086
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	7 cut(s)	167, 217, 330, 421, 515, 587, 708
BstF5I	GGATG	5 cut(s)	100, 114, 394, 573, 639
BstFNI	CGCG	1 cut(s)	1003
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 1005
BstKTI	GATC	3 cut(s)	325, 570, 1103
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	322, 567, 1100
BstMCI	CGRYCG	1 cut(s)	1103
BstMWI	GCNNNNNNNGC	1 cut(s)	664
BstNI	CCWGG	1 cut(s)	1150
BstSCI	CCNGG	2 cut(s)	808, 1148
BstSFI	CTRYAG	2 cut(s)	193, 993
BstUI	CGCG	1 cut(s)	1003
BstV1I	GCAGC	2 cut(s)	979, 1007
BstV2I	GAAGAC	1 cut(s)	5
BsuI	GTATCC	2 cut(s)	785, 833
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	5 cut(s)	100, 114, 394, 573, 639
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	2 cut(s)	520, 1102
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	2 cut(s)	239, 1005
Cfr13I	GGNCC	3 cut(s)	187, 543, 1177
Csp6I	GTAC	2 cut(s)	402, 927
CviAII	CATG	1 cut(s)	986
CviQI	GTAC	2 cut(s)	402, 927
DdeI	CTNAG	7 cut(s)	167, 217, 330, 421, 515, 587, 708
DpnI	GATC	3 cut(s)	324, 569, 1102
DpnII	GATC	3 cut(s)	322, 567, 1100
DraI	TTTAAA	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	3 cut(s)	187, 543, 1177
EcoO109I	RGGNCCY	1 cut(s)	1177
EcoRII	CCWGG	1 cut(s)	1148
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	1 cut(s)	989
FaiI	YATR	6 cut(s)	158, 824, 933, 987, 1007, 1113
FalI	AAGNNNNNCTT	4 cut(s)	647, 679, 1013, 1045
FaqI	GGGAC	1 cut(s)	1190
FatI	CATG	1 cut(s)	985
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	303, 993, 996
FokI	GGATG	5 cut(s)	87, 101, 401, 560, 646
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	303, 993, 996
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	238, 1004
GluI	GCNGC	3 cut(s)	303, 993, 996
GsuI	CTGGAG	1 cut(s)	4
HaeII	RGCGCY	1 cut(s)	240
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	2 cut(s)	239, 1005
Hin1II	CATG	1 cut(s)	989
Hin6I	GCGC	2 cut(s)	237, 1003
HinP1I	GCGC	2 cut(s)	237, 1003
HincII	GTYRAC	2 cut(s)	619, 815
HindII	GTYRAC	2 cut(s)	619, 815
HindIII	AAGCTT	1 cut(s)	1123
HinfI	GANTC	4 cut(s)	211, 677, 872, 887
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	4 cut(s)	473, 544, 728, 934
Hpy166II	GTNNAC	2 cut(s)	619, 815
Hpy188I	TCNGA	9 cut(s)	81, 220, 358, 373, 578, 682, 970, 1081, 1105
Hpy8I	GTNNAC	2 cut(s)	619, 815
Hpy99I	CGWCG	1 cut(s)	819
HpyAV	CCTTC	2 cut(s)	329, 823
HpyCH4III	ACNGT	3 cut(s)	11, 40, 845
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	8 cut(s)	69, 195, 367, 455, 557, 985, 995, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	664
HpyF3I	CTNAG	7 cut(s)	167, 217, 330, 421, 515, 587, 708
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	1 cut(s)	989
HspAI	GCGC	2 cut(s)	237, 1003
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	322, 567, 1100
LguI	GCTCTTC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	979, 1007
LweI	GCATC	3 cut(s)	289, 582, 961
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	3 cut(s)	5, 40, 802
MalI	GATC	3 cut(s)	324, 569, 1102
MboI	GATC	3 cut(s)	322, 567, 1100
MboII	GAAGA	4 cut(s)	5, 210, 959, 1131
MhlI	GDGCHC	2 cut(s)	95, 586
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	2 cut(s)	762, 849
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	2 cut(s)	810, 1150
MvaI	CCWGG	1 cut(s)	1150
MvnI	CGCG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	1 cut(s)	664
NciI	CCSGG	1 cut(s)	810
NdeII	GATC	3 cut(s)	322, 567, 1100
NlaIII	CATG	1 cut(s)	989
NlaIV	GGNNCC	1 cut(s)	1178
NmuCI	GTSAC	2 cut(s)	5, 40
NspV	TTCGAA	2 cut(s)	442, 1086
PaqCI	CACCTGC	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	1077
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	4 cut(s)	211, 677, 872, 887
PflMI	CCANNNNNTGG	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	1148
PkrI	GCNGC	3 cut(s)	304, 994, 997
Ple19I	CGATCG	1 cut(s)	1103
PpuMI	RGGWCCY	1 cut(s)	1177
Psp1406I	AACGTT	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	1177
Psp6I	CCWGG	1 cut(s)	1148
PspGI	CCWGG	1 cut(s)	1148
PspN4I	GGNNCC	1 cut(s)	1178
PspPI	GGNCC	3 cut(s)	187, 543, 1177
PspPPI	RGGWCCY	1 cut(s)	1177
PstI	CTGCAG	2 cut(s)	197, 997
PstNI	CAGNNNCTG	1 cut(s)	866
PvuI	CGATCG	1 cut(s)	1103
RsaI	GTAC	2 cut(s)	403, 928
RsaNI	GTAC	2 cut(s)	402, 927
RseI	CAYNNNNRTG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	813
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	762, 849
SatI	GCNGC	3 cut(s)	303, 993, 996
Sau3AI	GATC	3 cut(s)	322, 567, 1100
Sau96I	GGNCC	3 cut(s)	187, 543, 1177
ScaI	AGTACT	1 cut(s)	928
ScrFI	CCNGG	2 cut(s)	810, 1150
SduI	GDGCHC	2 cut(s)	95, 586
SfaNI	GCATC	3 cut(s)	289, 582, 961
SfcI	CTRYAG	2 cut(s)	193, 993
SfuI	TTCGAA	2 cut(s)	442, 1086
SinI	GGWCC	3 cut(s)	187, 543, 1177
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SsiI	CCGC	1 cut(s)	302
SspI	AATATT	2 cut(s)	550, 1076
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	808, 1148
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	3 cut(s)	11, 40, 845
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	9 cut(s)	52, 276, 282, 442, 696, 814, 835, 1059, 1086
TatI	WGTACW	2 cut(s)	401, 926
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	4 cut(s)	211, 677, 872, 887
Tru1I	TTAA	2 cut(s)	762, 849
Tru9I	TTAA	2 cut(s)	762, 849
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	5, 40
TseI	GCWGC	2 cut(s)	992, 995
Tsp45I	GTSAC	2 cut(s)	5, 40
TspDTI	ATGAA	4 cut(s)	336, 771, 879, 1002
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	187, 543, 1177
XapI	RAATTY	4 cut(s)	47, 139, 148, 758
XcmI	CCANNNNNNNNNTGG	2 cut(s)	631, 1027
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.