Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007877

Physical Location & Seq

Genomic Coordinates Reverse (-)

41416687 .. 41418895

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTGTGATTGTTTTCCCTCCAGCTCCCTCTACTTTCAATTAGGGTTTCCCAAATCCAATCACAGACCACAAAGCCAACAAGATCCTCACTTTTCTACCCCAAATTTCTTGCATCCATCAAATTCCACTAATTCAAACTCCCCATCTCTTAGAAATGCTAGGTCTTTGTGCCTGAGCAGAAGGCCCAGTCAGAGCCCATCAGAGGCTTCTGGGTTTCCAACCCAATTAGGGTTTAAGGAGGAAAGCGAAAACCTTTTCGACCTAGAATCGAAACCAAGTGATGAAACACAAATTGGGGTTGGACCCAGTAAAGAAGCCAATGCTACTTCATTGGGTTCAGATTTTCTGGAACCAAAGAGTAGTGAAGGCGAGGTTTTGGAAAAGGAGGAGGGGTTGAAGCGCGTTGATGGCAACGTTGGGTTGAAGAAAGTGAGGCAGCTGATGAAGAGGTCCAGTATTCTAGCCAAGCAAGTGATCAATATTGAAAATGCTCTCAGCTTGGGCTTTGTTTCACAGCTTTGGGTCAATACCACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGTAACTTGCTTTCAGGGGAGTGTGAACGTTTTCTTCTGGAGGATGTTATCCAGGTTGGTGATGTTGTGCTTGTGGAGGATGAGAGTGTGATTGAGAATGAATTCAAAATGGTTGGATTGGAAACATTGGTAGGATACGAAGTTGTAACACCAGGTCGACGAACTATCGGAAAGGTGCGGGGATATAGTTTTAACATCAATTCAGGGGCTGTTGAATCACTTGAGCTTGATTCATTTGGCATTGCAATTATCCCGTCAAGTTTGGTGAGTACATATGCTTTGTTTGTTAAGGATGTGCTTGAAGTTGTATCTGATGCTGTCATTGTGCATGAAGCTGCAGCGTCTCGCATATACAGGCTAACCAAGGGTTTCTTGGACAACCAAAACGCTGCAACTTCCATAGATGACATTGAAGAGTACTCTGACTTTGAAAGACCTGTAGAATCTGATAAGCGCTCAAGAAGAAGTTCTCGTAACCAGAAGTTCAGTTCTCGGAAAAGCAAGACCGATGATGAGTGGGAGCCGGAGCTCCCAATGGATTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRC

Protein Analysis

371

Amino Acids

41.27

Weight (kDa)

4.92

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38570 AT2G38570
fragaria_vesca	FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660 FvH4_6g09660
malus_domestica	MD04G1175900.v1.1 MD12G1190300.v1.1
prunus_persica	Prupe.6G295400_v2.0.a1
pyrus_communis	pycom04g15520 pycom12g17760
rosa_chinensis	RchiOBHm_Chr3g0460291
rosa_laevigata	RLG00000025026
rosa_multiflora	Rmu_co8446709.1_g000001 Rmu_sc0000449.1_g000015
rosa_roxburghii	Rroxscaffold_6G00419660
rosa_rugosa	Rorug03G0041400
rosa_samantha	Rh3AG099200 Rh3BG103200 Rh3CG104800 Rh3DG104500
rosa_wichuraiana	Rw3G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	742
AclI	AACGTT	2 cut(s)	414, 592
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	3 cut(s)	103, 121, 665
AfaI	GTAC	2 cut(s)	835, 983
AfeI	AGCGCT	1 cut(s)	1019
AfiI	CCNNNNNNNGG	3 cut(s)	202, 228, 537
AjnI	CCWGG	2 cut(s)	615, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	7 cut(s)	24, 439, 498, 517, 790, 899, 1093
AluI	AGCT	7 cut(s)	24, 439, 498, 517, 790, 899, 1093
Alw21I	GWGCWC	1 cut(s)	1095
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	773
Aor51HI	AGCGCT	1 cut(s)	1019
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	4 cut(s)	436, 899, 902, 953
ApoI	RAATTY	3 cut(s)	103, 121, 665
Asp700I	GAANNNNTTC	3 cut(s)	594, 665, 1030
AspLEI	GCGC	2 cut(s)	402, 1020
AspS9I	GGNCC	3 cut(s)	183, 302, 450
AsuHPI	GGTGA	2 cut(s)	635, 841
AvaII	GGWCC	2 cut(s)	302, 450
BanII	GRGCYC	2 cut(s)	197, 1095
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	4 cut(s)	448, 886, 914, 940
BccI	CCATC	5 cut(s)	124, 151, 205, 401, 535
BciT130I	CCWGG	2 cut(s)	617, 717
BciVI	GTATCC	1 cut(s)	692
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	912
BfaI	CTAG	3 cut(s)	159, 263, 461
BfmI	CTRYAG	2 cut(s)	900, 1002
BfoI	RGCGCY	1 cut(s)	1021
BfuI	GTATCC	1 cut(s)	692
BisI	GCNGC	4 cut(s)	437, 900, 903, 954
BlsI	GCNGC	4 cut(s)	438, 901, 904, 955
BmcAI	AGTACT	1 cut(s)	983
Bme1390I	CCNGG	2 cut(s)	617, 717
Bme18I	GGWCC	2 cut(s)	302, 450
BmgT120I	GGNCC	3 cut(s)	183, 302, 450
BmiI	GGNNCC	3 cut(s)	304, 351, 1086
BmrFI	CCNGG	2 cut(s)	617, 717
BmrI	ACTGGG	2 cut(s)	180, 300
BmsI	GCATC	2 cut(s)	121, 868
BmuI	ACTGGG	2 cut(s)	180, 300
BpmI	CTGGAG	2 cut(s)	4, 623
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	806, 1006
BsaJI	CCNNGG	1 cut(s)	927
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 228, 537
Bse1I	ACTGG	3 cut(s)	186, 306, 453
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	617, 717
BseDI	CCNNGG	1 cut(s)	927
BseGI	GGATG	5 cut(s)	112, 546, 613, 649, 862
BseLI	CCNNNNNNNGG	3 cut(s)	202, 228, 537
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	2 cut(s)	164, 508
BseNI	ACTGG	3 cut(s)	186, 306, 453
BseRI	GAGGAG	2 cut(s)	401, 577
BseXI	GCAGC	4 cut(s)	448, 886, 914, 940
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiSI	CCGG	1 cut(s)	1088
BslI	CCNNNNNNNGG	3 cut(s)	202, 228, 537
BsmAI	GTCTC	1 cut(s)	912
BsmBI	CGTCTC	1 cut(s)	912
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	197, 1095
Bsp143I	GATC	2 cut(s)	82, 474
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	2 cut(s)	165, 507
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	304, 351, 1086
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	186, 306, 453
BssECI	CCNNGG	1 cut(s)	927
BssMI	GATC	2 cut(s)	82, 474
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	617, 717
Bst6I	CTCTTC	2 cut(s)	440, 972
BstDEI	CTNAG	3 cut(s)	149, 173, 494
BstF5I	GGATG	5 cut(s)	112, 546, 613, 649, 862
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	1021
BstHHI	GCGC	2 cut(s)	402, 1020
BstKTI	GATC	2 cut(s)	85, 477
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	2 cut(s)	82, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNI	CCWGG	2 cut(s)	617, 717
BstSCI	CCNGG	2 cut(s)	615, 715
BstSFI	CTRYAG	2 cut(s)	900, 1002
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	448, 886, 914, 940
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	5 cut(s)	112, 546, 613, 649, 862
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	2 cut(s)	402, 1020
Cfr13I	GGNCC	3 cut(s)	183, 302, 450
CseI	GACGC	1 cut(s)	894
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	2 cut(s)	834, 982
CviAII	CATG	1 cut(s)	893
CviQI	GTAC	2 cut(s)	834, 982
DdeI	CTNAG	3 cut(s)	149, 173, 494
DpnI	GATC	2 cut(s)	84, 476
DpnII	GATC	2 cut(s)	82, 474
Eam1104I	CTCTTC	2 cut(s)	440, 972
EarI	CTCTTC	2 cut(s)	440, 972
Ecl136II	GAGCTC	1 cut(s)	1093
Eco130I	CCWWGG	1 cut(s)	927
Eco24I	GRGCYC	2 cut(s)	197, 1095
Eco47I	GGWCC	2 cut(s)	302, 450
Eco47III	AGCGCT	1 cut(s)	1019
Eco53kI	GAGCTC	1 cut(s)	1093
EcoICRI	GAGCTC	1 cut(s)	1093
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	615, 715
EcoT14I	CCWWGG	1 cut(s)	927
EcoT38I	GRGCYC	2 cut(s)	197, 1095
ErhI	CCWWGG	1 cut(s)	927
Esp3I	CGTCTC	1 cut(s)	912
FaeI	CATG	1 cut(s)	896
FaiI	YATR	7 cut(s)	750, 838, 840, 894, 914, 916, 965
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FatI	CATG	1 cut(s)	892
FauI	CCCGC	1 cut(s)	735
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	437, 900, 903, 954
FokI	GGATG	5 cut(s)	99, 553, 620, 656, 869
FriOI	GRGCYC	2 cut(s)	197, 1095
Fsp4HI	GCNGC	4 cut(s)	437, 900, 903, 954
FspBI	CTAG	3 cut(s)	159, 263, 461
GlaI	GCGC	2 cut(s)	401, 1019
GluI	GCNGC	4 cut(s)	437, 900, 903, 954
GsuI	CTGGAG	2 cut(s)	4, 623
HaeII	RGCGCY	1 cut(s)	1021
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	1088
HgaI	GACGC	1 cut(s)	894
HhaI	GCGC	2 cut(s)	402, 1020
Hin1II	CATG	1 cut(s)	896
Hin6I	GCGC	2 cut(s)	400, 1018
HinP1I	GCGC	2 cut(s)	400, 1018
HincII	GTYRAC	1 cut(s)	722
HindII	GTYRAC	1 cut(s)	722
HinfI	GANTC	4 cut(s)	266, 779, 794, 1007
HpaII	CCGG	1 cut(s)	1088
HphI	GGTGA	2 cut(s)	635, 841
Hpy166II	GTNNAC	2 cut(s)	590, 722
Hpy188I	TCNGA	9 cut(s)	192, 202, 340, 734, 877, 988, 1012, 1059, 1112
Hpy188III	TCNNGA	3 cut(s)	347, 602, 1023
Hpy8I	GTNNAC	2 cut(s)	590, 722
Hpy99I	CGWCG	1 cut(s)	726
HpyAV	CCTTC	2 cut(s)	174, 359
HpyCH4IV	ACGT	2 cut(s)	414, 592
HpyCH4V	TGCA	5 cut(s)	112, 809, 892, 902, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	3 cut(s)	149, 173, 494
HpySE526I	ACGT	2 cut(s)	414, 592
Hsp92II	CATG	1 cut(s)	896
HspAI	GCGC	2 cut(s)	400, 1018
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	82, 474
LmnI	GCTCC	4 cut(s)	29, 1084, 1090, 1098
Lsp1109I	GCAGC	4 cut(s)	448, 886, 914, 940
LweI	GCATC	2 cut(s)	121, 868
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	3 cut(s)	159, 263, 461
MaeII	ACGT	2 cut(s)	414, 592
MaeIII	GTNAC	3 cut(s)	566, 709, 1037
MalI	GATC	2 cut(s)	84, 476
MboI	GATC	2 cut(s)	82, 474
MboII	GAAGA	5 cut(s)	436, 457, 590, 989, 1038
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	197, 1095
MluCI	AATT	9 cut(s)	38, 103, 121, 130, 224, 291, 665, 763, 810
MmeI	TCCRAC	3 cut(s)	242, 280, 658
MroXI	GAANNNNTTC	3 cut(s)	594, 665, 1030
MseI	TTAA	3 cut(s)	234, 756, 852
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	1 cut(s)	1088
MspR9I	CCNGG	2 cut(s)	617, 717
MvaI	CCWGG	2 cut(s)	617, 717
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	408
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	2 cut(s)	82, 474
NlaIII	CATG	1 cut(s)	896
NlaIV	GGNNCC	3 cut(s)	304, 351, 1086
PdmI	GAANNNNTTC	3 cut(s)	594, 665, 1030
PfeI	GAWTC	4 cut(s)	266, 779, 794, 1007
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	438, 901, 904, 955
Psp124BI	GAGCTC	1 cut(s)	1095
Psp1406I	AACGTT	2 cut(s)	414, 592
Psp6I	CCWGG	2 cut(s)	615, 715
PspGI	CCWGG	2 cut(s)	615, 715
PspN4I	GGNNCC	3 cut(s)	304, 351, 1086
PspPI	GGNCC	3 cut(s)	183, 302, 450
PstI	CTGCAG	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	835, 983
RsaNI	GTAC	2 cut(s)	834, 982
SacI	GAGCTC	1 cut(s)	1095
SalI	GTCGAC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	234, 756, 852
SatI	GCNGC	4 cut(s)	437, 900, 903, 954
Sau3AI	GATC	2 cut(s)	82, 474
Sau96I	GGNCC	3 cut(s)	183, 302, 450
ScaI	AGTACT	1 cut(s)	983
ScrFI	CCNGG	2 cut(s)	617, 717
SduI	GDGCHC	2 cut(s)	197, 1095
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	121, 868
SfcI	CTRYAG	2 cut(s)	900, 1002
SinI	GGWCC	2 cut(s)	302, 450
SmlI	CTYRAG	2 cut(s)	785, 1021
SmoI	CTYRAG	2 cut(s)	785, 1021
Sse9I	AATT	9 cut(s)	38, 103, 121, 130, 224, 291, 665, 763, 810
SsiI	CCGC	1 cut(s)	742
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	3 cut(s)	159, 263, 461
SstI	GAGCTC	1 cut(s)	1095
StyD4I	CCNGG	2 cut(s)	615, 715
StyI	CCWWGG	1 cut(s)	927
TaiI	ACGT	2 cut(s)	417, 595
TaqI	TCGA	3 cut(s)	258, 269, 721
TaqII	GACCGA	1 cut(s)	1085
TasI	AATT	9 cut(s)	38, 103, 121, 130, 224, 291, 665, 763, 810
TatI	WGTACW	2 cut(s)	833, 981
TfiI	GAWTC	4 cut(s)	266, 779, 794, 1007
Tru1I	TTAA	3 cut(s)	234, 756, 852
Tru9I	TTAA	3 cut(s)	234, 756, 852
TseI	GCWGC	4 cut(s)	436, 899, 902, 953
TspDTI	ATGAA	6 cut(s)	297, 318, 458, 678, 786, 909
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	302, 450
XapI	RAATTY	3 cut(s)	103, 121, 665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 934
XmiI	GTMKAC	1 cut(s)	721
XmnI	GAANNNNTTC	3 cut(s)	594, 665, 1030
XspI	CTAG	3 cut(s)	159, 263, 461
ZrmI	AGTACT	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.