Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

16165921 .. 16168628

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTTAATGATCGCGAGGAAAGCTTTGGCCTCGGCGCATACTAAGGCGTTTCGTTTGGCAACAAGGGATGTACATTGCTTTAGTTCCATCTTAGTGTCTCCTCCTCTCGTGTCACTTGACTTGCCTGAAAATTGGATTCCTTACTCTGATCCTCCACCTCCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGATGGTAATGTTATCGCTGAGGAAATCAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAAAAAGGCTGTTGGAAAAGTCCCTGGTCTTGCTGTTGTTTTGGTTGGTGAACAAAGAGACTCGCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTTGGCTGAATTACCAGAGGATTGTACTGAAGGACAGATTATCAGTGTATTGAGAAAATTCAATGAAGACACGTCTATTCACGGAATTCTTGTGCAACTTCCTTTACCCCAACATCTTAATGAATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAAACGTGGGGAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGGGCTGTGTGGAGTTGTTGATAAGAACGGGTGTTGAAATAGCAGGAAAAAATGCTGTGGTCATAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGACAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATATCGTTATAGCAGCAGCGGGTATACCTAATTTAGTTCGTGGAAGTTGGCTTAAGCCTGGAGCAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGGATAGTAGCTGTGAGTTTGGTTACCGTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAGGTGTTGCCTCGGCTATCACTCCCGTACCGGGAGGAGTTGGACCTATGACGATCACCATGCTACTATGCAATACTTTGGAGGCTGCTAAGCGGATCTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

352

Amino Acids

38.05

Weight (kDa)

6.47

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	66 - 163	3.1e-32	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	820
AccII	CGCG	2 cut(s)	14, 737
AciI	CCGC	4 cut(s)	593, 794, 815, 1045
AclWI	GGATC	4 cut(s)	143, 764, 777, 1055
AcsI	RAATTY	2 cut(s)	434, 462
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	72, 403, 981
AfiI	CCNNNNNNNGG	1 cut(s)	983
AflII	CTTAAG	1 cut(s)	848
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	3 cut(s)	439, 514, 653
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	2 cut(s)	280, 853
AluBI	AGCT	3 cut(s)	23, 350, 903
AluI	AGCT	3 cut(s)	23, 350, 903
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	3 cut(s)	102, 167, 309
AlwI	GGATC	4 cut(s)	143, 764, 777, 1055
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	809, 812, 1037
ApoI	RAATTY	2 cut(s)	434, 462
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	995
AsuC2I	CCSGG	1 cut(s)	984
AsuHPI	GGTGA	4 cut(s)	205, 317, 532, 1000
AvaII	GGWCC	1 cut(s)	995
AxyI	CCTNAGG	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BamHI	GGATCC	1 cut(s)	769
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	2 cut(s)	191, 450
Bbv12I	GWGCWC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	821, 824, 1024
BccI	CCATC	3 cut(s)	95, 194, 536
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	282, 855
BcnI	CCSGG	1 cut(s)	984
BcoDI	GTCTC	3 cut(s)	102, 167, 309
BfaI	CTAG	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	848
BisI	GCNGC	3 cut(s)	810, 813, 1038
BlpI	GCTNAGC	1 cut(s)	1041
BlsI	GCNGC	3 cut(s)	811, 814, 1039
Bme1390I	CCNGG	3 cut(s)	282, 855, 984
Bme18I	GGWCC	1 cut(s)	995
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	2 cut(s)	591, 771
BmrFI	CCNGG	3 cut(s)	282, 855, 984
BpiI	GAAGAC	2 cut(s)	191, 450
BpmI	CTGGAG	2 cut(s)	870, 876
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	1041
BpuMI	CCSGG	1 cut(s)	984
BsaJI	CCNNGG	3 cut(s)	30, 280, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	983
Bse1I	ACTGG	2 cut(s)	367, 887
Bse21I	CCTNAGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	73, 582
BseBI	CCWGG	2 cut(s)	282, 855
BseDI	CCNNGG	3 cut(s)	30, 280, 963
BseGI	GGATG	3 cut(s)	73, 550, 937
BseLI	CCNNNNNNNGG	1 cut(s)	983
BseMI	GCAATG	2 cut(s)	73, 582
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	367, 887
BseRI	GAGGAG	3 cut(s)	90, 93, 1002
BseXI	GCAGC	3 cut(s)	821, 824, 1024
Bsh1236I	CGCG	2 cut(s)	14, 737
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	983
BsmAI	GTCTC	3 cut(s)	102, 167, 309
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	9, 148, 769, 1005, 1047
Bsp1720I	GCTNAGC	1 cut(s)	1041
Bsp68I	TCGCGA	1 cut(s)	14
BspACI	CCGC	4 cut(s)	593, 794, 815, 1045
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	2 cut(s)	14, 737
BspLI	GGNNCC	2 cut(s)	591, 771
BspPI	GGATC	4 cut(s)	143, 764, 777, 1055
BspTI	CTTAAG	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	73, 582
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	367, 887
BssECI	CCNNGG	3 cut(s)	30, 280, 963
BssMI	GATC	5 cut(s)	9, 148, 769, 1005, 1047
BssNAI	GTATAC	1 cut(s)	821
BssSI	CACGAG	1 cut(s)	107
Bst1107I	GTATAC	1 cut(s)	821
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	282, 855
Bst4CI	ACNGT	4 cut(s)	190, 742, 751, 920
BstAFI	CTTAAG	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	5 cut(s)	42, 91, 216, 615, 1041
BstEII	GGTNACC	1 cut(s)	914
BstF5I	GGATG	3 cut(s)	73, 550, 937
BstFNI	CGCG	2 cut(s)	14, 737
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	5 cut(s)	12, 151, 772, 1008, 1050
BstMAI	GTCTC	3 cut(s)	102, 167, 309
BstMBI	GATC	5 cut(s)	9, 148, 769, 1005, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	282, 855
BstNSI	RCATGY	1 cut(s)	758
BstPI	GGTNACC	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	280, 853, 982
BstUI	CGCG	2 cut(s)	14, 737
BstV1I	GCAGC	3 cut(s)	821, 824, 1024
BstV2I	GAAGAC	2 cut(s)	191, 450
BstX2I	RGATCY	2 cut(s)	769, 1047
BstYI	RGATCY	2 cut(s)	769, 1047
BstZ17I	GTATAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	73, 550, 937
BtsIMutI	CAGTG	1 cut(s)	427
BtuMI	TCGCGA	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	756
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	3 cut(s)	71, 402, 980
CviAII	CATG	3 cut(s)	731, 755, 1012
CviQI	GTAC	3 cut(s)	71, 402, 980
DdeI	CTNAG	5 cut(s)	42, 91, 216, 615, 1041
DpnI	GATC	5 cut(s)	11, 150, 771, 1007, 1049
DpnII	GATC	5 cut(s)	9, 148, 769, 1005, 1047
EciI	GGCGGA	1 cut(s)	809
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	995
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	615
Eco91I	GGTNACC	1 cut(s)	914
EcoO65I	GGTNACC	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	280, 853
EcoRV	GATATC	1 cut(s)	799
FaeI	CATG	3 cut(s)	734, 758, 1015
FalI	AAGNNNNNCTT	1 cut(s)	1034
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	730, 754, 1011
FauI	CCCGC	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	810, 813, 1038
FokI	GGATG	3 cut(s)	80, 537, 944
Fsp4HI	GCNGC	3 cut(s)	810, 813, 1038
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	810, 813, 1038
GsuI	CTGGAG	2 cut(s)	870, 876
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	983
HgaI	GACGC	1 cut(s)	743
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	734, 758, 1015
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	2 cut(s)	21, 348
HinfI	GANTC	4 cut(s)	136, 317, 500, 568
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	4 cut(s)	205, 317, 532, 1000
Hpy166II	GTNNAC	3 cut(s)	308, 762, 821
Hpy188I	TCNGA	3 cut(s)	148, 227, 1058
Hpy188III	TCNNGA	3 cut(s)	13, 511, 773
Hpy8I	GTNNAC	3 cut(s)	308, 762, 821
HpyAV	CCTTC	2 cut(s)	401, 784
HpyCH4III	ACNGT	4 cut(s)	190, 742, 751, 920
HpyCH4IV	ACGT	2 cut(s)	449, 561
HpyCH4V	TGCA	6 cut(s)	472, 575, 609, 724, 754, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	5 cut(s)	42, 91, 216, 615, 1041
HpySE526I	ACGT	2 cut(s)	449, 561
Hsp92II	CATG	3 cut(s)	734, 758, 1015
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	9, 148, 769, 1005, 1047
LmnI	GCTCC	1 cut(s)	857
Lsp1109I	GCAGC	3 cut(s)	821, 824, 1024
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	2 cut(s)	449, 561
MaeIII	GTNAC	3 cut(s)	111, 914, 938
MalI	GATC	5 cut(s)	11, 150, 771, 1007, 1049
MboI	GATC	5 cut(s)	9, 148, 769, 1005, 1047
MboII	GAAGA	5 cut(s)	196, 265, 368, 455, 1042
MflI	RGATCY	2 cut(s)	769, 1047
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	6 cut(s)	130, 342, 386, 434, 462, 826
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	4 cut(s)	250, 679, 856, 973
MseI	TTAA	6 cut(s)	5, 345, 369, 495, 557, 849
MslI	CAYNNNNRTG	2 cut(s)	92, 495
MspA1I	CMGCKG	2 cut(s)	595, 815
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	3 cut(s)	282, 855, 984
MvaI	CCWGG	2 cut(s)	282, 855
MvnI	CGCG	2 cut(s)	14, 737
MwoI	GCNNNNNNNGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	984
NdeII	GATC	5 cut(s)	9, 148, 769, 1005, 1047
NlaIII	CATG	3 cut(s)	734, 758, 1015
NlaIV	GGNNCC	2 cut(s)	591, 771
NmeAIII	GCCGAG	2 cut(s)	11, 944
NmuCI	GTSAC	1 cut(s)	111
NruI	TCGCGA	1 cut(s)	14
NspI	RCATGY	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	136, 500, 568
PkrI	GCNGC	3 cut(s)	811, 814, 1039
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	280, 853
PspEI	GGTNACC	1 cut(s)	914
PspGI	CCWGG	2 cut(s)	280, 853
PspN4I	GGNNCC	2 cut(s)	591, 771
PspPI	GGNCC	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	769, 1047
RruI	TCGCGA	1 cut(s)	14
RsaI	GTAC	3 cut(s)	72, 403, 981
RsaNI	GTAC	3 cut(s)	71, 402, 980
RseI	CAYNNNNRTG	2 cut(s)	92, 495
SaqAI	TTAA	6 cut(s)	5, 345, 369, 495, 557, 849
SatI	GCNGC	3 cut(s)	810, 813, 1038
Sau3AI	GATC	5 cut(s)	9, 148, 769, 1005, 1047
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	282, 855, 984
SduI	GDGCHC	1 cut(s)	780
SetI	ASST	9 cut(s)	25, 160, 352, 452, 564, 826, 905, 958, 1000
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	2 cut(s)	92, 495
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	6 cut(s)	130, 342, 386, 434, 462, 826
SsiI	CCGC	4 cut(s)	593, 794, 815, 1045
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	280, 853, 982
TaaI	ACNGT	4 cut(s)	190, 742, 751, 920
TaiI	ACGT	2 cut(s)	452, 564
TaqI	TCGA	1 cut(s)	891
TasI	AATT	6 cut(s)	130, 342, 386, 434, 462, 826
TatI	WGTACW	2 cut(s)	70, 401
TfiI	GAWTC	3 cut(s)	136, 500, 568
Tru1I	TTAA	6 cut(s)	5, 345, 369, 495, 557, 849
Tru9I	TTAA	6 cut(s)	5, 345, 369, 495, 557, 849
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	3 cut(s)	809, 812, 1037
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	4 cut(s)	272, 456, 513, 539
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	2 cut(s)	434, 462
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	820
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.