Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

7622890 .. 7626564

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATATTTATTTGGGTCCCTGTTTTTCTTATGCTTACCATAGCCCATGAGCAGACTGCTGCTGTTATTGATGGGAAGTCTATCGCGGACGATATTAGGTCAATAATAGGGAGTGAGGTAAGGAGGATGAAAGAGAGCATTGGAATGGTGCCTGGGTTGGGTGTAATTATGGTTGGTCAGAGAGAGGACTCTGAGACTTATGTCCGGAACAAGATGATGGCTTGTGAAGAAGTTGGAATCAAATCAAATGTGGCTCACCTGCCTGAGCATTGTACAAAAGATCAGCTTCTTAAAGCATTGTCAAAGTTTGATGTGGATCCCTCTGTTCATGGTATTCTTGTGCAACTTCCTCTACCACAACATTTGGATGAGAGAAAAATTATGGATGTGCTGAGTCCAGAGAAAGATGTGGATGGCTTCCATCCAATTAATATGGGAAATCTTGCCATGAGAGGAAGGGAGCCTATGTTTATTCCATGCACTCCAAAGGGTTGCATTGAGTTGTTGCTCAGGTCTGGCGTGGAAATCGTTGGGAAGAAAGCTGCTGTCATTGGCAGAAGTAATATTGTAGGATTGCCTGCATCGTTGCTTTTGCAGAGGCACCATGCAACAGTCAGCATTGTACATGCATTCACAAAGAACCCAGAACATATCACCTGTGAAGCTGACATTGTGGTCACAGCTGCAGGAGTGCCTAATCTTGTCCGTGGAAATTGGCTAAAACCTGGAGCAGTTGTCATCGACGTTGGGACCAATCCAGTTGAGGACCCTAGCTGTGAGCGAGGTTATCGCCTCATAGGAGATGTTTGCTATGAAGAAGCAGTGCGGGTGGTGTCAGCCATTACCCCAGTTCCTGGAGGAGTTGGACCCATGACAATTGCTATGCTTCTATCAAATACTCTTGATTCAGCAAAGCGAGCCTATGCCTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

311

Amino Acids

33.75

Weight (kDa)

6.21

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	23 - 138	4.3e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	159 - 307	1.2e-56	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
AasI	GACNNNNNNGTC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	148, 600
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	2 cut(s)	86, 826
AclWI	GGATC	2 cut(s)	311, 324
AfaI	GTAC	2 cut(s)	274, 624
AfiI	CCNNNNNNNGG	2 cut(s)	158, 854
AjnI	CCWGG	3 cut(s)	151, 724, 853
AluBI	AGCT	5 cut(s)	286, 542, 665, 683, 774
AluI	AGCT	5 cut(s)	286, 542, 665, 683, 774
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	311, 324
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	59, 542, 683
AseI	ATTAAT	1 cut(s)	429
AspS9I	GGNCC	4 cut(s)	16, 750, 766, 866
AsuHPI	GGTGA	2 cut(s)	248, 646
AvaII	GGWCC	4 cut(s)	16, 750, 766, 866
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	148, 600
BbvI	GCAGC	3 cut(s)	46, 529, 670
BccI	CCATC	4 cut(s)	65, 211, 407, 429
BciT130I	CCWGG	3 cut(s)	153, 726, 855
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	60, 543, 684
BlsI	GCNGC	3 cut(s)	61, 544, 685
Bme1390I	CCNGG	3 cut(s)	153, 726, 855
Bme18I	GGWCC	4 cut(s)	16, 750, 766, 866
BmgT120I	GGNCC	4 cut(s)	16, 750, 766, 866
BmiI	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
BmrFI	CCNGG	3 cut(s)	153, 726, 855
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	842
BoxI	GACNNNNGTC	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	747, 876
Bpu10I	CCTNAGC	2 cut(s)	264, 509
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	152, 706
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 854
Bse1I	ACTGG	2 cut(s)	758, 848
Bse8I	GATNNNNATC	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	153, 726, 855
BseDI	CCNNGG	2 cut(s)	152, 706
BseGI	GGATG	5 cut(s)	132, 373, 391, 418, 421
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	158, 854
BseMII	CTCAG	4 cut(s)	183, 255, 383, 523
BseNI	ACTGG	2 cut(s)	758, 848
BseRI	GAGGAG	1 cut(s)	873
BseXI	GCAGC	3 cut(s)	46, 529, 670
Bsh1236I	CGCG	1 cut(s)	86
BshNI	GGYRCC	2 cut(s)	148, 600
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	2, 763
BslI	CCNNNNNNNGG	2 cut(s)	158, 854
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	2, 763
BsmI	GAATGC	1 cut(s)	629
Bsp13I	TCCGGA	1 cut(s)	204
Bsp1407I	TGTACA	2 cut(s)	272, 622
Bsp143I	GATC	2 cut(s)	280, 316
BspACI	CCGC	2 cut(s)	86, 826
BspCNI	CTCAG	4 cut(s)	184, 256, 384, 522
BspEI	TCCGGA	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	311, 324
BspT107I	GGYRCC	2 cut(s)	148, 600
BsrGI	TGTACA	2 cut(s)	272, 622
BsrI	ACTGG	2 cut(s)	758, 848
BssECI	CCNNGG	2 cut(s)	152, 706
BssMI	GATC	2 cut(s)	280, 316
Bst2UI	CCWGG	3 cut(s)	153, 726, 855
Bst4CI	ACNGT	1 cut(s)	613
BstAUI	TGTACA	2 cut(s)	272, 622
BstC8I	GCNNGC	2 cut(s)	579, 918
BstDEI	CTNAG	4 cut(s)	192, 264, 392, 509
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	5 cut(s)	132, 373, 391, 418, 421
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	283, 319
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	280, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstNI	CCWGG	3 cut(s)	153, 726, 855
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	151, 724, 853
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	46, 529, 670
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	5 cut(s)	132, 373, 391, 418, 421
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	579, 918
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	4 cut(s)	16, 750, 766, 866
Csp6I	GTAC	2 cut(s)	273, 623
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	7 cut(s)	47, 329, 448, 477, 605, 626, 871
CviQI	GTAC	2 cut(s)	273, 623
DdeI	CTNAG	4 cut(s)	192, 264, 392, 509
DpnI	GATC	2 cut(s)	282, 318
DpnII	GATC	2 cut(s)	280, 316
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
Eco47I	GGWCC	4 cut(s)	16, 750, 766, 866
EcoO109I	RGGNCCY	2 cut(s)	16, 766
EcoRII	CCWGG	3 cut(s)	151, 724, 853
EcoT22I	ATGCAT	1 cut(s)	631
FaeI	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	2, 763
FatI	CATG	7 cut(s)	46, 328, 447, 476, 604, 625, 870
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	3 cut(s)	60, 543, 684
FokI	GGATG	5 cut(s)	139, 380, 398, 408, 425
Fsp4HI	GCNGC	3 cut(s)	60, 543, 684
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	3 cut(s)	60, 543, 684
GsuI	CTGGAG	2 cut(s)	747, 876
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
HinfI	GANTC	4 cut(s)	188, 237, 394, 905
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	248, 646
Hpy188I	TCNGA	2 cut(s)	180, 193
Hpy188III	TCNNGA	3 cut(s)	205, 398, 902
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	8 cut(s)	343, 480, 495, 581, 595, 608, 629, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	4 cut(s)	192, 264, 392, 509
HpySE526I	ACGT	1 cut(s)	744
Hsp92II	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
KflI	GGGWCCC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	280, 316
LmnI	GCTCC	2 cut(s)	460, 728
Lsp1109I	GCAGC	3 cut(s)	46, 529, 670
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	282, 318
MboI	GATC	2 cut(s)	280, 316
MboII	GAAGA	3 cut(s)	239, 547, 827
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	5 cut(s)	165, 378, 426, 712, 876
MlyI	GAGTC	2 cut(s)	182, 403
MmeI	TCCRAC	2 cut(s)	214, 844
Mph1103I	ATGCAT	1 cut(s)	631
MroI	TCCGGA	1 cut(s)	204
MseI	TTAA	2 cut(s)	291, 429
MslI	CAYNNNNRTG	2 cut(s)	143, 366
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	3 cut(s)	153, 726, 855
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	3 cut(s)	153, 726, 855
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	917
NdeII	GATC	2 cut(s)	280, 316
NlaIII	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
NlaIV	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	631
NspI	RCATGY	1 cut(s)	629
PaqCI	CACCTGC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	237, 905
PflMI	CCANNNNNTGG	1 cut(s)	854
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	3 cut(s)	61, 544, 685
PleI	GAGTC	2 cut(s)	182, 402
PpsI	GAGTC	2 cut(s)	182, 402
PpuMI	RGGWCCY	2 cut(s)	16, 766
PshAI	GACNNNNGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	16, 766
Psp6I	CCWGG	3 cut(s)	151, 724, 853
PspGI	CCWGG	3 cut(s)	151, 724, 853
PspN4I	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
PspPI	GGNCC	4 cut(s)	16, 750, 766, 866
PspPPI	RGGWCCY	2 cut(s)	16, 766
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	274, 624
RsaNI	GTAC	2 cut(s)	273, 623
RseI	CAYNNNNRTG	2 cut(s)	143, 366
SaqAI	TTAA	2 cut(s)	291, 429
SatI	GCNGC	3 cut(s)	60, 543, 684
Sau3AI	GATC	2 cut(s)	280, 316
Sau96I	GGNCC	4 cut(s)	16, 750, 766, 866
SchI	GAGTC	2 cut(s)	182, 403
ScrFI	CCNGG	3 cut(s)	153, 726, 855
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	4 cut(s)	16, 750, 766, 866
SmiMI	CAYNNNNRTG	2 cut(s)	143, 366
Sse9I	AATT	5 cut(s)	165, 378, 426, 712, 876
SsiI	CCGC	2 cut(s)	86, 826
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	151, 724, 853
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	1 cut(s)	741
TasI	AATT	5 cut(s)	165, 378, 426, 712, 876
TatI	WGTACW	2 cut(s)	272, 622
TfiI	GAWTC	2 cut(s)	237, 905
Tru1I	TTAA	2 cut(s)	291, 429
Tru9I	TTAA	2 cut(s)	291, 429
TscAI	CASTG	1 cut(s)	828
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	3 cut(s)	59, 542, 683
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	143, 317, 828
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	828
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	4 cut(s)	16, 750, 766, 866
VspI	ATTAAT	1 cut(s)	429
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.