Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

7447756 .. 7450846

Gene Structure 3091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATGCCAAGAGTGGCCATGTCATGGCGCAATGGACTCATAATGAGAATCCCATGGAGAACCAGAGCCCTCAACACCTTAAACGACGACGTTCACTCCTCCCGCCCAATTATCGTGTCTCCTCCTCTTGTCTCTCTAGACATTCCTGACGATTGGACTCCTTCTCCACCCTCTTCGCATTTTGATTTTCCTATCAATTGCTCCCATGAGCAGACTGCTGCTGTTATTGATGGGAAGTCTATCGCGGACGATATTAGGTCAAGAATAGGGAGTGAGGTAAGGAGGATGAAAGAGAGCATTGGAATGGTGCCTGGGTTGGGTGTAATTATGGTTGGTCAGAGAAAGGACTCTGAGACTTATGTCCGGAACAAGATGATGGCTTGTGAAGAAGTTGGAATCAAATCAAATGTGGCTCACCTGCCTGAGCATTGTACAAAAGATCAGCTTCTTAAAGCATTGTCAAAGTTTGATGTGGATCCCTCTGTTCATGGTATTCTCGTGCAACTTCCTCTACCACAACATTTGGATGAGAGAAAAATTATGGATGTGCTGAGTCCAGAGAAAGATGTGGATGGCTTCCATCCAATTAATATGGGAAATCTTGCCATGAGAGGAAGGGAGCCTATGTTTATTCCATGCACTCCAAAGGGTTGCATTGAGTTGTTGCTCAGGTCTGGCGTGGAAATCGTTGGGAAGAAAGCTGCTGTCATTGGCAGAAGTAATATTGTAGGATTGCCTACATCGTTGCTTTTGCAGAGGCACCATGCAACAGTCAGCATTGTACATGCATTCACAAAGAACCCAGAACATATCACCTGTGAAGCTGACATTGTGGTCACAGCTGCAGGAGTGCCTAATCTTGTCCGTGGAAATTGGCTAAAACCTGGAGCAGTTGTCATCGACGTTGGGACCAATCCAGTTGAGGACCCTAGCTGTGAGCGAGGTTATCGCCTCATAGGAGATGTTTGCTATGAAGAAGCAGTGCGGGTGGTGTCAGCCATTACCCCAGTTCCTGGAGGAGTTGGACCCATGACAATTGCTATGCTTCTATCAAATACTCTTGATTCAGCAAAGCGAGCCTATGCCTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

364

Amino Acids

39.78

Weight (kDa)

6.86

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	76 - 191	1.1e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	212 - 360	1.5e-56	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	426
AasI	GACNNNNNNGTC	1 cut(s)	833
Acc36I	ACCTGC	1 cut(s)	426
AccB1I	GGYRCC	2 cut(s)	307, 759
AccB7I	CCANNNNNTGG	2 cut(s)	24, 1013
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	3 cut(s)	103, 245, 985
AclWI	GGATC	2 cut(s)	470, 483
AcoI	YGGCCR	1 cut(s)	15
AfaI	GTAC	2 cut(s)	433, 783
AfiI	CCNNNNNNNGG	3 cut(s)	24, 317, 1013
AjnI	CCWGG	3 cut(s)	310, 883, 1012
AluBI	AGCT	5 cut(s)	445, 701, 824, 842, 933
AluI	AGCT	5 cut(s)	445, 701, 824, 842, 933
Alw26I	GTCTC	3 cut(s)	123, 136, 347
AlwI	GGATC	2 cut(s)	470, 483
AlwNI	CAGNNNCTG	1 cut(s)	1013
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	3 cut(s)	218, 701, 842
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	909, 925, 1025
AsuHPI	GGTGA	2 cut(s)	407, 805
AvaII	GGWCC	3 cut(s)	909, 925, 1025
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	2 cut(s)	307, 759
BanII	GRGCYC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	205, 688, 829
BccI	CCATC	4 cut(s)	224, 370, 566, 588
BciT130I	CCWGG	3 cut(s)	312, 885, 1014
BcoDI	GTCTC	3 cut(s)	123, 136, 347
BfaI	CTAG	2 cut(s)	137, 930
BfmI	CTRYAG	1 cut(s)	843
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	3 cut(s)	219, 702, 843
BlsI	GCNGC	3 cut(s)	220, 703, 844
Bme1390I	CCNGG	3 cut(s)	312, 885, 1014
Bme18I	GGWCC	3 cut(s)	909, 925, 1025
BmgT120I	GGNCC	3 cut(s)	909, 925, 1025
BmiI	GGNNCC	7 cut(s)	309, 477, 621, 761, 910, 927, 1027
BmrFI	CCNGG	3 cut(s)	312, 885, 1014
BmrI	ACTGGG	1 cut(s)	1001
BmuI	ACTGGG	1 cut(s)	1001
BoxI	GACNNNNGTC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	906, 1035
Bpu10I	CCTNAGC	2 cut(s)	423, 668
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	53, 311, 865
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	8 cut(s)	80, 110, 148, 178, 611, 641, 879, 909
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 317, 1013
Bse1I	ACTGG	2 cut(s)	917, 1007
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	312, 885, 1014
BseDI	CCNNGG	3 cut(s)	53, 311, 865
BseGI	GGATG	5 cut(s)	291, 532, 550, 577, 580
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	24, 317, 1013
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	342, 414, 542, 682
BseNI	ACTGG	2 cut(s)	917, 1007
BseRI	GAGGAG	4 cut(s)	88, 111, 114, 1032
BseXI	GCAGC	3 cut(s)	205, 688, 829
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	2 cut(s)	307, 759
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	3 cut(s)	24, 317, 1013
BsmAI	GTCTC	3 cut(s)	123, 136, 347
BsmFI	GGGAC	1 cut(s)	922
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	363
Bsp1407I	TGTACA	2 cut(s)	431, 781
Bsp143I	GATC	2 cut(s)	439, 475
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	3 cut(s)	103, 245, 985
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	4 cut(s)	343, 415, 543, 681
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	7 cut(s)	309, 477, 621, 761, 910, 927, 1027
BspMAI	CTGCAG	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	470, 483
BspT107I	GGYRCC	2 cut(s)	307, 759
BsrDI	GCAATG	1 cut(s)	37
BsrGI	TGTACA	2 cut(s)	431, 781
BsrI	ACTGG	2 cut(s)	917, 1007
BssECI	CCNNGG	3 cut(s)	53, 311, 865
BssMI	GATC	2 cut(s)	439, 475
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	3 cut(s)	312, 885, 1014
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	178
BstAUI	TGTACA	2 cut(s)	431, 781
BstC8I	GCNNGC	1 cut(s)	1077
BstDEI	CTNAG	4 cut(s)	351, 423, 551, 668
BstDSI	CCRYGG	2 cut(s)	53, 865
BstF5I	GGATG	5 cut(s)	291, 532, 550, 577, 580
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	442, 478
BstMAI	GTCTC	3 cut(s)	123, 136, 347
BstMBI	GATC	2 cut(s)	439, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	1076
BstNI	CCWGG	3 cut(s)	312, 885, 1014
BstNSI	RCATGY	1 cut(s)	788
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	310, 883, 1012
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	205, 688, 829
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	2 cut(s)	53, 865
BtsCI	GGATG	5 cut(s)	291, 532, 550, 577, 580
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	1 cut(s)	987
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	1077
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	909, 925, 1025
Csp6I	GTAC	2 cut(s)	432, 782
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviQI	GTAC	2 cut(s)	432, 782
DdeI	CTNAG	4 cut(s)	351, 423, 551, 668
DpnI	GATC	2 cut(s)	441, 477
DpnII	GATC	2 cut(s)	439, 475
DrdI	GACNNNNNNGTC	1 cut(s)	833
DseDI	GACNNNNNNGTC	1 cut(s)	833
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	3 cut(s)	909, 925, 1025
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRII	CCWGG	3 cut(s)	310, 883, 1012
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	53
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	922
FauI	CCCGC	2 cut(s)	110, 978
Fnu4HI	GCNGC	3 cut(s)	219, 702, 843
FokI	GGATG	5 cut(s)	298, 539, 557, 567, 584
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	219, 702, 843
FspBI	CTAG	2 cut(s)	137, 930
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	219, 702, 843
GsuI	CTGGAG	2 cut(s)	906, 1035
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	7 cut(s)	36, 48, 157, 347, 396, 553, 1064
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	407, 805
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	339, 352
Hpy188III	TCNNGA	6 cut(s)	137, 146, 261, 364, 557, 1061
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	3 cut(s)	89, 92, 905
HpyAV	CCTTC	2 cut(s)	171, 609
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	2 cut(s)	90, 903
HpyCH4V	TGCA	7 cut(s)	502, 639, 654, 754, 767, 788, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1076
HpyF3I	CTNAG	4 cut(s)	351, 423, 551, 668
HpySE526I	ACGT	2 cut(s)	90, 903
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	439, 475
LmnI	GCTCC	3 cut(s)	206, 619, 887
Lsp1109I	GCAGC	3 cut(s)	205, 688, 829
MaeI	CTAG	2 cut(s)	137, 930
MaeII	ACGT	2 cut(s)	90, 903
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	2 cut(s)	441, 477
MboI	GATC	2 cut(s)	439, 475
MboII	GAAGA	4 cut(s)	165, 398, 706, 986
MfeI	CAATTG	2 cut(s)	196, 1035
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	7 cut(s)	108, 196, 324, 537, 585, 871, 1035
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	4 cut(s)	30, 151, 341, 562
MmeI	TCCRAC	2 cut(s)	373, 1003
Mox20I	TGGCCA	1 cut(s)	17
Mph1103I	ATGCAT	1 cut(s)	790
MroI	TCCGGA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	80, 450, 588
MslI	CAYNNNNRTG	2 cut(s)	302, 525
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	3 cut(s)	312, 885, 1014
MunI	CAATTG	2 cut(s)	196, 1035
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	3 cut(s)	312, 885, 1014
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	1076
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	439, 475
NlaIV	GGNNCC	7 cut(s)	309, 477, 621, 761, 910, 927, 1027
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	788
PaqCI	CACCTGC	1 cut(s)	426
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	3 cut(s)	48, 396, 1064
PflMI	CCANNNNNTGG	2 cut(s)	24, 1013
PfoI	TCCNGGA	1 cut(s)	1012
PkrI	GCNGC	3 cut(s)	220, 703, 844
PleI	GAGTC	4 cut(s)	30, 151, 341, 561
PpsI	GAGTC	4 cut(s)	30, 151, 341, 561
PpuMI	RGGWCCY	1 cut(s)	925
PshAI	GACNNNNGTC	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	925
Psp6I	CCWGG	3 cut(s)	310, 883, 1012
PspGI	CCWGG	3 cut(s)	310, 883, 1012
PspN4I	GGNNCC	7 cut(s)	309, 477, 621, 761, 910, 927, 1027
PspPI	GGNCC	3 cut(s)	909, 925, 1025
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	433, 783
RsaNI	GTAC	2 cut(s)	432, 782
RseI	CAYNNNNRTG	2 cut(s)	302, 525
SaqAI	TTAA	3 cut(s)	80, 450, 588
SatI	GCNGC	3 cut(s)	219, 702, 843
Sau3AI	GATC	2 cut(s)	439, 475
Sau96I	GGNCC	3 cut(s)	909, 925, 1025
SchI	GAGTC	4 cut(s)	30, 151, 341, 562
ScrFI	CCNGG	3 cut(s)	312, 885, 1014
SduI	GDGCHC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	3 cut(s)	909, 925, 1025
SmiMI	CAYNNNNRTG	2 cut(s)	302, 525
Sse9I	AATT	7 cut(s)	108, 196, 324, 537, 585, 871, 1035
SsiI	CCGC	3 cut(s)	103, 245, 985
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	2 cut(s)	137, 930
StyD4I	CCNGG	3 cut(s)	310, 883, 1012
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	2 cut(s)	93, 906
TaqI	TCGA	1 cut(s)	900
TasI	AATT	7 cut(s)	108, 196, 324, 537, 585, 871, 1035
TatI	WGTACW	2 cut(s)	431, 781
TfiI	GAWTC	3 cut(s)	48, 396, 1064
Tru1I	TTAA	3 cut(s)	80, 450, 588
Tru9I	TTAA	3 cut(s)	80, 450, 588
TscAI	CASTG	1 cut(s)	987
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	3 cut(s)	218, 701, 842
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	3 cut(s)	302, 476, 987
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	1 cut(s)	987
Van91I	CCANNNNNTGG	2 cut(s)	24, 1013
VpaK11BI	GGWCC	3 cut(s)	909, 925, 1025
VspI	ATTAAT	1 cut(s)	588
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	2 cut(s)	137, 930
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.