Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032631.1

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

2213 .. 5250

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgtcatggcgcaatggactcataatgagaatcccatggagaaccagagccctcaacaccttaaacgacggcgttcactcctcccgcccaattatcgtgtctcctcctcttgtctctctagacattcctgacgattggactccttctccaccctcttcacattttgattttcctatcaattgctcccatgagcagactgctgctgttattgatgggaagtctatcgcggacgatattaggtcaagaatagggagtgaggtaaggaggatgaaagagagcattggaatggtgcctgggttgggtgtaattatggttggtcagagaaaggactctgagacttatgtccggaacaagatgatggcttgtgaagaagttggaatcaaatcaaatgtggctcacctgcctgagcattgtacaaaagatcagcttcttaaagcattgtcaaagtttgatgtggatccctctgttcatggtattctcgtgcaacttcctctaccacaacatttggatgagagaaaaattatggatgtgctgagtccagagaaagatgtggatggcttccatccaattaatatgggaaatcttgccatgagaggaagggagcctatgtttattccatgcactccaaagggttgcattgagttgttgctcaggtctggcgtggaaatcgttgggaagaaagctgctgtcattggcagaagtaatattgtaggattacctacatcgttgcttttgcagaggcaccatgcaacagtcagcattgtacatgcattcacaaagaacccagaacatatcacctgtgaagctgacattgtggtcacagctgcaggagtgcctaatcttgtccgtggaaattggctaaaacctggagcagttgtcatcgacgttgggaccaatccagttgaggaccctagctgtgagcgaggttatcgcctcataggagatgtttgctatgaagaagcagtgcgggtggtgtcagccattaccccagttcctggaggagttggacccatgacaattgctatgcttctatcaaatactcttgattcagcaaagcgagcctatgcctttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

358

Amino Acids

39.04

Weight (kDa)

6.86

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	408
AasI	GACNNNNNNGTC	1 cut(s)	815
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	2 cut(s)	289, 741
AccB7I	CCANNNNNTGG	1 cut(s)	995
AccII	CGCG	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	345
AciI	CCGC	3 cut(s)	85, 227, 967
AclWI	GGATC	2 cut(s)	452, 465
AfaI	GTAC	2 cut(s)	415, 765
AfiI	CCNNNNNNNGG	2 cut(s)	299, 995
AjnI	CCWGG	3 cut(s)	292, 865, 994
AluBI	AGCT	5 cut(s)	427, 683, 806, 824, 915
AluI	AGCT	5 cut(s)	427, 683, 806, 824, 915
Alw26I	GTCTC	3 cut(s)	105, 118, 329
AlwI	GGATC	2 cut(s)	452, 465
AlwNI	CAGNNNCTG	1 cut(s)	995
Aor13HI	TCCGGA	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	200, 683, 824
AseI	ATTAAT	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	891, 907, 1007
AsuHPI	GGTGA	2 cut(s)	389, 787
AvaII	GGWCC	3 cut(s)	891, 907, 1007
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	2 cut(s)	289, 741
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	187, 670, 811
BccI	CCATC	4 cut(s)	206, 352, 548, 570
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	294, 867, 996
BcoDI	GTCTC	3 cut(s)	105, 118, 329
BfaI	CTAG	2 cut(s)	119, 912
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	201, 684, 825
BlsI	GCNGC	3 cut(s)	202, 685, 826
Bme1390I	CCNGG	3 cut(s)	294, 867, 996
Bme18I	GGWCC	3 cut(s)	891, 907, 1007
BmgT120I	GGNCC	3 cut(s)	891, 907, 1007
BmiI	GGNNCC	7 cut(s)	291, 459, 603, 743, 892, 909, 1009
BmrFI	CCNGG	3 cut(s)	294, 867, 996
BmrI	ACTGGG	1 cut(s)	983
BmuI	ACTGGG	1 cut(s)	983
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	888, 1017
Bpu10I	CCTNAGC	2 cut(s)	405, 650
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	35, 293, 847
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	6 cut(s)	130, 160, 593, 623, 861, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 995
Bse1I	ACTGG	2 cut(s)	899, 989
Bse3DI	GCAATG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	294, 867, 996
BseDI	CCNNGG	3 cut(s)	35, 293, 847
BseGI	GGATG	5 cut(s)	273, 514, 532, 559, 562
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	299, 995
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	4 cut(s)	324, 396, 524, 664
BseNI	ACTGG	2 cut(s)	899, 989
BseRI	GAGGAG	4 cut(s)	70, 93, 96, 1014
BseXI	GCAGC	3 cut(s)	187, 670, 811
Bsh1236I	CGCG	1 cut(s)	227
BshNI	GGYRCC	2 cut(s)	289, 741
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	2 cut(s)	299, 995
BsmAI	GTCTC	3 cut(s)	105, 118, 329
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	345
Bsp1407I	TGTACA	2 cut(s)	413, 763
Bsp143I	GATC	2 cut(s)	421, 457
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	3 cut(s)	85, 227, 967
BspCNI	CTCAG	4 cut(s)	325, 397, 525, 663
BspEI	TCCGGA	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	7 cut(s)	291, 459, 603, 743, 892, 909, 1009
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	452, 465
BspT107I	GGYRCC	2 cut(s)	289, 741
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	2 cut(s)	413, 763
BsrI	ACTGG	2 cut(s)	899, 989
BssECI	CCNNGG	3 cut(s)	35, 293, 847
BssMI	GATC	2 cut(s)	421, 457
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	3 cut(s)	294, 867, 996
Bst4CI	ACNGT	1 cut(s)	754
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	2 cut(s)	413, 763
BstC8I	GCNNGC	1 cut(s)	1059
BstDEI	CTNAG	4 cut(s)	333, 405, 533, 650
BstDSI	CCRYGG	2 cut(s)	35, 847
BstF5I	GGATG	5 cut(s)	273, 514, 532, 559, 562
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	424, 460
BstMAI	GTCTC	3 cut(s)	105, 118, 329
BstMBI	GATC	2 cut(s)	421, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	1058
BstNI	CCWGG	3 cut(s)	294, 867, 996
BstNSI	RCATGY	1 cut(s)	770
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	292, 865, 994
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	187, 670, 811
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtgI	CCRYGG	2 cut(s)	35, 847
BtsCI	GGATG	5 cut(s)	273, 514, 532, 559, 562
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	1059
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	3 cut(s)	891, 907, 1007
Csp6I	GTAC	2 cut(s)	414, 764
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	9 cut(s)	6, 36, 188, 470, 589, 618, 746, 767, 1012
CviQI	GTAC	2 cut(s)	414, 764
DdeI	CTNAG	4 cut(s)	333, 405, 533, 650
DpnI	GATC	2 cut(s)	423, 459
DpnII	GATC	2 cut(s)	421, 457
DrdI	GACNNNNNNGTC	1 cut(s)	815
DseDI	GACNNNNNNGTC	1 cut(s)	815
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	891, 907, 1007
EcoO109I	RGGNCCY	1 cut(s)	907
EcoRII	CCWGG	3 cut(s)	292, 865, 994
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	9 cut(s)	9, 39, 191, 473, 592, 621, 749, 770, 1015
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	9 cut(s)	5, 35, 187, 469, 588, 617, 745, 766, 1011
FauI	CCCGC	2 cut(s)	92, 960
Fnu4HI	GCNGC	3 cut(s)	201, 684, 825
FokI	GGATG	5 cut(s)	280, 521, 539, 549, 566
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	201, 684, 825
FspBI	CTAG	2 cut(s)	119, 912
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	201, 684, 825
GsuI	CTGGAG	2 cut(s)	888, 1017
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	9 cut(s)	9, 39, 191, 473, 592, 621, 749, 770, 1015
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	7 cut(s)	18, 30, 139, 329, 378, 535, 1046
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	389, 787
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	321, 334
Hpy188III	TCNNGA	6 cut(s)	119, 128, 243, 346, 539, 1043
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	71, 887
HpyAV	CCTTC	2 cut(s)	153, 591
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	7 cut(s)	484, 621, 636, 736, 749, 770, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1058
HpyF3I	CTNAG	4 cut(s)	333, 405, 533, 650
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	9 cut(s)	9, 39, 191, 473, 592, 621, 749, 770, 1015
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	421, 457
LmnI	GCTCC	3 cut(s)	188, 601, 869
Lsp1109I	GCAGC	3 cut(s)	187, 670, 811
MaeI	CTAG	2 cut(s)	119, 912
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	2 cut(s)	423, 459
MboI	GATC	2 cut(s)	421, 457
MboII	GAAGA	4 cut(s)	147, 380, 688, 968
MfeI	CAATTG	2 cut(s)	178, 1017
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	7 cut(s)	90, 178, 306, 519, 567, 853, 1017
MlyI	GAGTC	4 cut(s)	12, 133, 323, 544
MmeI	TCCRAC	2 cut(s)	355, 985
Mph1103I	ATGCAT	1 cut(s)	772
MroI	TCCGGA	1 cut(s)	345
MseI	TTAA	3 cut(s)	62, 432, 570
MslI	CAYNNNNRTG	2 cut(s)	284, 507
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	3 cut(s)	294, 867, 996
MunI	CAATTG	2 cut(s)	178, 1017
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	3 cut(s)	294, 867, 996
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	1058
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	421, 457
NlaIII	CATG	9 cut(s)	9, 39, 191, 473, 592, 621, 749, 770, 1015
NlaIV	GGNNCC	7 cut(s)	291, 459, 603, 743, 892, 909, 1009
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	770
PaqCI	CACCTGC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	770
PfeI	GAWTC	3 cut(s)	30, 378, 1046
PflMI	CCANNNNNTGG	1 cut(s)	995
PfoI	TCCNGGA	1 cut(s)	994
PkrI	GCNGC	3 cut(s)	202, 685, 826
PleI	GAGTC	4 cut(s)	12, 133, 323, 543
PpsI	GAGTC	4 cut(s)	12, 133, 323, 543
PpuMI	RGGWCCY	1 cut(s)	907
PshAI	GACNNNNGTC	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	907
Psp6I	CCWGG	3 cut(s)	292, 865, 994
PspGI	CCWGG	3 cut(s)	292, 865, 994
PspN4I	GGNNCC	7 cut(s)	291, 459, 603, 743, 892, 909, 1009
PspPI	GGNCC	3 cut(s)	891, 907, 1007
PspPPI	RGGWCCY	1 cut(s)	907
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	415, 765
RsaNI	GTAC	2 cut(s)	414, 764
RseI	CAYNNNNRTG	2 cut(s)	284, 507
SaqAI	TTAA	3 cut(s)	62, 432, 570
SatI	GCNGC	3 cut(s)	201, 684, 825
Sau3AI	GATC	2 cut(s)	421, 457
Sau96I	GGNCC	3 cut(s)	891, 907, 1007
SchI	GAGTC	4 cut(s)	12, 133, 323, 544
ScrFI	CCNGG	3 cut(s)	294, 867, 996
SduI	GDGCHC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	3 cut(s)	891, 907, 1007
SmiMI	CAYNNNNRTG	2 cut(s)	284, 507
Sse9I	AATT	7 cut(s)	90, 178, 306, 519, 567, 853, 1017
SsiI	CCGC	3 cut(s)	85, 227, 967
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	2 cut(s)	119, 912
StyD4I	CCNGG	3 cut(s)	292, 865, 994
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	882
TasI	AATT	7 cut(s)	90, 178, 306, 519, 567, 853, 1017
TatI	WGTACW	2 cut(s)	413, 763
TfiI	GAWTC	3 cut(s)	30, 378, 1046
Tru1I	TTAA	3 cut(s)	62, 432, 570
Tru9I	TTAA	3 cut(s)	62, 432, 570
TscAI	CASTG	1 cut(s)	969
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	3 cut(s)	200, 683, 824
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	3 cut(s)	284, 458, 969
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	1 cut(s)	969
Van91I	CCANNNNNTGG	1 cut(s)	995
VpaK11BI	GGWCC	3 cut(s)	891, 907, 1007
VspI	ATTAAT	1 cut(s)	570
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	770
XspI	CTAG	2 cut(s)	119, 912
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.