Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

7762951 .. 7766523

Gene Structure 3573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTGAAGCGCAAAGCGAGGAGGCTCAGAATAATACAAATTACAAGTTTAGGAGGGGCAGAGAGAGAGGGAGAGCGCAAAGCCACAATGATGCCAAGAGTGGCCATGTCATGGCGCAATGGACTCATAATGAGAATCCCATGGAGAACCAGAGCCCTCAACACCTTAAACGACGACGTTCACTCCTCCCGCCCAATTATCGTGTCTCCTCCTCTTGTCTCTCTAGACATTCCTGACGATTGGACTCCTTCTCCACCCTCTTCACATTTTGATTTTCCTATCAATTGCTCCCATGAGCAGACTGCTGCTGTTATTGATGGGAAGTCTATCGCAGACGATATTAGGTCAAGAATAGGGAGTGAGGTAAGGAGGATGAAAGAGAGCATTGGAATGGTGCCTGGGTTGGGTGTAATTATGGTTGGTCAGAGAAAGGACTCTGAGACTTATGTCCGGAACAAGATGATGGCTTGTGAAGAAGTTGGAATCAAATCAAATGTGGCTCACCTGCCTGAGCATTGTACAAAAGATCAGCTTCTTAAAGCATTGTCAAAGTTTGATGTGGATCCCTCTGTTCATGGTATTCTCGTGCAACTTCCTCTACCACAACATTTGGATGAGAGAAAAATTATGGATGTGCTGAGTCCAGAGAAAGATGTGGATGGCTTCCATCCAATTAATATGGGAAATCTTGCCATGAGAGGAAGGGAGCCTATGTTTATTCCATGCACTCCAAAGGGTTGCATTGAGTTGTTGCTCAGGTCTGGCGTGGAAATCGTTGGGAAGAAAGCTGCTGTCATTGGCAGAAGTAATATTGTAGGATTGCCTGCATCATTGCTTTTGCAGAGGCACCATGCAACAGTCAGCATTGTACATGCATTCACAAAGAACCCAGAACATATCACCTGTGAAGCTGACATTGTGGTCACAGCTGCAGGGGTGCCTAATCTTGTCCGTGGAAATTGGCTAAAACCTGGAGCAGTTGTCATCGACGTTGGGACCAATCCAGTTGTGGACCCTAGCTGTGAGCGAGGTTATCGCCTCATAGGAGATGTTTGCTATGAAGAAGCAGTGCGGGTGGTGTCAGCCATTACCCCAGTTCCTGGAGGAGTTGGACCCATGACAATTGCTATGCTTCTATCAAATACTCTTGATTCAGCAAAGCGAGCCTATGCCTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

393

Amino Acids

43.03

Weight (kDa)

8.87

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	105 - 220	1.3e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	241 - 389	2.3e-56	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	920
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	3 cut(s)	394, 846, 937
AccB7I	CCANNNNNTGG	2 cut(s)	111, 1100
AccIII	TCCGGA	1 cut(s)	450
AciI	CCGC	2 cut(s)	190, 1072
AclWI	GGATC	2 cut(s)	557, 570
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	2 cut(s)	520, 870
AfiI	CCNNNNNNNGG	3 cut(s)	111, 404, 1100
AjnI	CCWGG	3 cut(s)	397, 970, 1099
AluBI	AGCT	5 cut(s)	532, 788, 911, 929, 1020
AluI	AGCT	5 cut(s)	532, 788, 911, 929, 1020
Alw26I	GTCTC	3 cut(s)	210, 223, 434
AlwI	GGATC	2 cut(s)	557, 570
AlwNI	CAGNNNCTG	1 cut(s)	1100
Aor13HI	TCCGGA	1 cut(s)	450
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	305, 788, 929
AseI	ATTAAT	1 cut(s)	675
AspLEI	GCGC	3 cut(s)	12, 78, 117
AspS9I	GGNCC	3 cut(s)	996, 1012, 1112
AsuHPI	GGTGA	3 cut(s)	16, 494, 892
AvaII	GGWCC	3 cut(s)	996, 1012, 1112
BalI	TGGCCA	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	3 cut(s)	394, 846, 937
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	292, 775, 916
BccI	CCATC	4 cut(s)	311, 457, 653, 675
BciT130I	CCWGG	3 cut(s)	399, 972, 1101
BcoDI	GTCTC	3 cut(s)	210, 223, 434
BfaI	CTAG	2 cut(s)	224, 1017
BfmI	CTRYAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	3 cut(s)	306, 789, 930
BlsI	GCNGC	3 cut(s)	307, 790, 931
Bme1390I	CCNGG	3 cut(s)	399, 972, 1101
Bme18I	GGWCC	3 cut(s)	996, 1012, 1112
BmgT120I	GGNCC	3 cut(s)	996, 1012, 1112
BmiI	GGNNCC	8 cut(s)	396, 564, 708, 848, 939, 997, 1014, 1114
BmrFI	CCNGG	3 cut(s)	399, 972, 1101
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	2 cut(s)	81, 836
BmuI	ACTGGG	1 cut(s)	1088
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	993, 1122
Bpu10I	CCTNAGC	2 cut(s)	510, 755
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	140, 398, 952
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	8 cut(s)	167, 197, 235, 265, 698, 728, 966, 996
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 404, 1100
Bse1I	ACTGG	2 cut(s)	1004, 1094
Bse3DI	GCAATG	2 cut(s)	124, 830
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	399, 972, 1101
BseDI	CCNNGG	3 cut(s)	140, 398, 952
BseGI	GGATG	5 cut(s)	378, 619, 637, 664, 667
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	111, 404, 1100
BseMI	GCAATG	2 cut(s)	124, 830
BseMII	CTCAG	5 cut(s)	40, 429, 501, 629, 769
BseNI	ACTGG	2 cut(s)	1004, 1094
BseRI	GAGGAG	5 cut(s)	34, 175, 198, 201, 1119
BseXI	GCAGC	3 cut(s)	292, 775, 916
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	3 cut(s)	394, 846, 937
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	3 cut(s)	111, 404, 1100
BsmAI	GTCTC	3 cut(s)	210, 223, 434
BsmFI	GGGAC	1 cut(s)	1009
BsmI	GAATGC	1 cut(s)	875
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	450
Bsp1407I	TGTACA	2 cut(s)	518, 868
Bsp143I	GATC	2 cut(s)	526, 562
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	190, 1072
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	5 cut(s)	39, 430, 502, 630, 768
BspEI	TCCGGA	1 cut(s)	450
BspLI	GGNNCC	8 cut(s)	396, 564, 708, 848, 939, 997, 1014, 1114
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	557, 570
BspT107I	GGYRCC	3 cut(s)	394, 846, 937
BsrDI	GCAATG	2 cut(s)	124, 830
BsrGI	TGTACA	2 cut(s)	518, 868
BsrI	ACTGG	2 cut(s)	1004, 1094
BssECI	CCNNGG	3 cut(s)	140, 398, 952
BssMI	GATC	2 cut(s)	526, 562
BssSI	CACGAG	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	3 cut(s)	399, 972, 1101
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	265
BstAUI	TGTACA	2 cut(s)	518, 868
BstC8I	GCNNGC	2 cut(s)	825, 1164
BstDEI	CTNAG	5 cut(s)	26, 438, 510, 638, 755
BstDSI	CCRYGG	2 cut(s)	140, 952
BstF5I	GGATG	5 cut(s)	378, 619, 637, 664, 667
BstHHI	GCGC	3 cut(s)	12, 78, 117
BstKTI	GATC	2 cut(s)	529, 565
BstMAI	GTCTC	3 cut(s)	210, 223, 434
BstMBI	GATC	2 cut(s)	526, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	1163
BstNI	CCWGG	3 cut(s)	399, 972, 1101
BstNSI	RCATGY	1 cut(s)	875
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	397, 970, 1099
BstSFI	CTRYAG	1 cut(s)	930
BstV1I	GCAGC	3 cut(s)	292, 775, 916
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	2 cut(s)	140, 952
BtsCI	GGATG	5 cut(s)	378, 619, 637, 664, 667
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	1 cut(s)	1074
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	825, 1164
CaiI	CAGNNNCTG	1 cut(s)	1100
CfoI	GCGC	3 cut(s)	12, 78, 117
Cfr13I	GGNCC	3 cut(s)	996, 1012, 1112
Csp6I	GTAC	2 cut(s)	519, 869
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviQI	GTAC	2 cut(s)	519, 869
DdeI	CTNAG	5 cut(s)	26, 438, 510, 638, 755
DpnI	GATC	2 cut(s)	528, 564
DpnII	GATC	2 cut(s)	526, 562
DrdI	GACNNNNNNGTC	1 cut(s)	920
DseDI	GACNNNNNNGTC	1 cut(s)	920
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	996, 1012, 1112
EcoRII	CCWGG	3 cut(s)	397, 970, 1099
EcoT14I	CCWWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	140
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	1009
FauI	CCCGC	2 cut(s)	197, 1065
Fnu4HI	GCNGC	3 cut(s)	306, 789, 930
FokI	GGATG	5 cut(s)	385, 626, 644, 654, 671
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	3 cut(s)	306, 789, 930
FspBI	CTAG	2 cut(s)	224, 1017
GlaI	GCGC	3 cut(s)	11, 77, 116
GluI	GCNGC	3 cut(s)	306, 789, 930
GsuI	CTGGAG	2 cut(s)	993, 1122
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	3 cut(s)	12, 78, 117
Hin6I	GCGC	3 cut(s)	10, 76, 115
HinP1I	GCGC	3 cut(s)	10, 76, 115
HinfI	GANTC	7 cut(s)	123, 135, 244, 434, 483, 640, 1151
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	3 cut(s)	16, 494, 892
Hpy166II	GTNNAC	2 cut(s)	181, 1012
Hpy188I	TCNGA	3 cut(s)	29, 426, 439
Hpy188III	TCNNGA	6 cut(s)	224, 233, 348, 451, 644, 1148
Hpy8I	GTNNAC	2 cut(s)	181, 1012
Hpy99I	CGWCG	3 cut(s)	176, 179, 992
HpyAV	CCTTC	2 cut(s)	258, 696
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	177, 990
HpyCH4V	TGCA	8 cut(s)	589, 726, 741, 827, 841, 854, 875, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1163
HpyF3I	CTNAG	5 cut(s)	26, 438, 510, 638, 755
HpySE526I	ACGT	2 cut(s)	177, 990
HspAI	GCGC	3 cut(s)	10, 76, 115
Kpn2I	TCCGGA	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	526, 562
LmnI	GCTCC	3 cut(s)	293, 706, 974
Lsp1109I	GCAGC	3 cut(s)	292, 775, 916
LweI	GCATC	2 cut(s)	81, 836
MaeI	CTAG	2 cut(s)	224, 1017
MaeII	ACGT	2 cut(s)	177, 990
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	2 cut(s)	528, 564
MboI	GATC	2 cut(s)	526, 562
MboII	GAAGA	4 cut(s)	252, 485, 793, 1073
MfeI	CAATTG	2 cut(s)	283, 1122
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	8 cut(s)	39, 195, 283, 411, 624, 672, 958, 1122
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	4 cut(s)	117, 238, 428, 649
MmeI	TCCRAC	2 cut(s)	460, 1090
Mox20I	TGGCCA	1 cut(s)	104
Mph1103I	ATGCAT	1 cut(s)	877
MroI	TCCGGA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	167, 537, 675
MslI	CAYNNNNRTG	3 cut(s)	89, 389, 612
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	399, 972, 1101
MunI	CAATTG	2 cut(s)	283, 1122
Mva1269I	GAATGC	1 cut(s)	875
MvaI	CCWGG	3 cut(s)	399, 972, 1101
MwoI	GCNNNNNNNGC	1 cut(s)	1163
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	526, 562
NlaIV	GGNNCC	8 cut(s)	396, 564, 708, 848, 939, 997, 1014, 1114
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	1 cut(s)	875
PaqCI	CACCTGC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	135, 483, 1151
PflMI	CCANNNNNTGG	2 cut(s)	111, 1100
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	3 cut(s)	307, 790, 931
PleI	GAGTC	4 cut(s)	117, 238, 428, 648
PpsI	GAGTC	4 cut(s)	117, 238, 428, 648
PshAI	GACNNNNGTC	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	675
Psp6I	CCWGG	3 cut(s)	397, 970, 1099
PspGI	CCWGG	3 cut(s)	397, 970, 1099
PspN4I	GGNNCC	8 cut(s)	396, 564, 708, 848, 939, 997, 1014, 1114
PspPI	GGNCC	3 cut(s)	996, 1012, 1112
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	1100
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	520, 870
RsaNI	GTAC	2 cut(s)	519, 869
RseI	CAYNNNNRTG	3 cut(s)	89, 389, 612
SaqAI	TTAA	3 cut(s)	167, 537, 675
SatI	GCNGC	3 cut(s)	306, 789, 930
Sau3AI	GATC	2 cut(s)	526, 562
Sau96I	GGNCC	3 cut(s)	996, 1012, 1112
SchI	GAGTC	4 cut(s)	117, 238, 428, 649
ScrFI	CCNGG	3 cut(s)	399, 972, 1101
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	81, 836
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	3 cut(s)	996, 1012, 1112
SmiMI	CAYNNNNRTG	3 cut(s)	89, 389, 612
Sse9I	AATT	8 cut(s)	39, 195, 283, 411, 624, 672, 958, 1122
SsiI	CCGC	2 cut(s)	190, 1072
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	2 cut(s)	224, 1017
StyD4I	CCNGG	3 cut(s)	397, 970, 1099
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	180, 993
TaqI	TCGA	1 cut(s)	987
TasI	AATT	8 cut(s)	39, 195, 283, 411, 624, 672, 958, 1122
TatI	WGTACW	2 cut(s)	518, 868
TfiI	GAWTC	3 cut(s)	135, 483, 1151
Tru1I	TTAA	3 cut(s)	167, 537, 675
Tru9I	TTAA	3 cut(s)	167, 537, 675
TscAI	CASTG	1 cut(s)	1074
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	3 cut(s)	305, 788, 929
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	3 cut(s)	389, 563, 1074
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	1 cut(s)	1074
Van91I	CCANNNNNTGG	2 cut(s)	111, 1100
VpaK11BI	GGWCC	3 cut(s)	996, 1012, 1112
VspI	ATTAAT	1 cut(s)	675
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XspI	CTAG	2 cut(s)	224, 1017
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.